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Page 1
A Galaxy of informatics resources for MS-based proteomics.
Mehta S, Bernt M, Chambers M, Fahrner M, Föll MC, Gruening B, Horro C, Johnson JE, Loux V, Rajczewski AT, Schilling O, Vandenbrouck Y, Gustafsson OJR, Thang WCM, Hyde C, Price G, Jagtap PD, Griffin TJ. Mehta S, et al. Among authors: jagtap pd. Expert Rev Proteomics. 2023 Jul-Dec;20(11):251-266. doi: 10.1080/14789450.2023.2265062. Epub 2023 Oct 30. Expert Rev Proteomics. 2023. PMID: 37787106 Review.
Integrative meta-omics in Galaxy and beyond.
Schiml VC, Delogu F, Kumar P, Kunath B, Batut B, Mehta S, Johnson JE, Grüning B, Pope PB, Jagtap PD, Griffin TJ, Arntzen MØ. Schiml VC, et al. Among authors: jagtap pd. Environ Microbiome. 2023 Jul 7;18(1):56. doi: 10.1186/s40793-023-00514-9. Environ Microbiome. 2023. PMID: 37420292 Free PMC article.
Multi-omic data analysis using Galaxy.
Boekel J, Chilton JM, Cooke IR, Horvatovich PL, Jagtap PD, Käll L, Lehtiö J, Lukasse P, Moerland PD, Griffin TJ. Boekel J, et al. Among authors: jagtap pd. Nat Biotechnol. 2015 Feb;33(2):137-9. doi: 10.1038/nbt.3134. Nat Biotechnol. 2015. PMID: 25658277 No abstract available.
Galaxy Training: A powerful framework for teaching!
Hiltemann S, Rasche H, Gladman S, Hotz HR, Larivière D, Blankenberg D, Jagtap PD, Wollmann T, Bretaudeau A, Goué N, Griffin TJ, Royaux C, Le Bras Y, Mehta S, Syme A, Coppens F, Droesbeke B, Soranzo N, Bacon W, Psomopoulos F, Gallardo-Alba C, Davis J, Föll MC, Fahrner M, Doyle MA, Serrano-Solano B, Fouilloux AC, van Heusden P, Maier W, Clements D, Heyl F; Galaxy Training Network; Grüning B, Batut B. Hiltemann S, et al. Among authors: jagtap pd. PLoS Comput Biol. 2023 Jan 9;19(1):e1010752. doi: 10.1371/journal.pcbi.1010752. eCollection 2023 Jan. PLoS Comput Biol. 2023. PMID: 36622853 Free PMC article.
Updates on metaQuantome Software for Quantitative Metaproteomics.
Mehta S, Kumar P, Crane M, Johnson JE, Sajulga R, Nguyen DDA, McGowan T, Arntzen MØ, Griffin TJ, Jagtap PD. Mehta S, et al. Among authors: jagtap pd. J Proteome Res. 2021 Apr 2;20(4):2130-2137. doi: 10.1021/acs.jproteome.0c00960. Epub 2021 Mar 8. J Proteome Res. 2021. PMID: 33683127
Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.
Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ 4th, Hettich RL, Jagtap PD, Janech MG, Kinkade DB, Leary DH, McIlvin MR, Moore EK, Morris RM, Neely BA, Nunn BL, Saunders JK, Shepherd AI, Symmonds NI, Walsh DA. Saito MA, et al. Among authors: jagtap pd. J Proteome Res. 2019 Apr 5;18(4):1461-1476. doi: 10.1021/acs.jproteome.8b00761. Epub 2019 Mar 12. J Proteome Res. 2019. PMID: 30702898 Free PMC article. Review.
BAL Fluid Metaproteome in Acute Respiratory Failure.
Jagtap PD, Viken KJ, Johnson J, McGowan T, Pendleton KM, Griffin TJ, Hunter RC, Rudney JD, Bhargava M. Jagtap PD, et al. Am J Respir Cell Mol Biol. 2018 Nov;59(5):648-652. doi: 10.1165/rcmb.2018-0068LE. Am J Respir Cell Mol Biol. 2018. PMID: 30382775 Free PMC article. No abstract available.
Metaproteomic analysis using the Galaxy framework.
Jagtap PD, Blakely A, Murray K, Stewart S, Kooren J, Johnson JE, Rhodus NL, Rudney J, Griffin TJ. Jagtap PD, et al. Proteomics. 2015 Oct;15(20):3553-65. doi: 10.1002/pmic.201500074. Epub 2015 Jul 24. Proteomics. 2015. PMID: 26058579
2019 Association of Biomolecular Resource Facilities Multi-Laboratory Data-Independent Acquisition Proteomics Study.
Kirkpatrick J, Stemmer PM, Searle BC, Herring LE, Martin L, Midha MK, Phinney BS, Shan B, Palmblad M, Wang Y, Jagtap PD, Neely BA. Kirkpatrick J, et al. Among authors: jagtap pd. J Biomol Tech. 2023 Jun 2;34(2):3fc1f5fe.9b78d780. doi: 10.7171/3fc1f5fe.9b78d780. eCollection 2023 Jul 1. J Biomol Tech. 2023. PMID: 37435391 Free PMC article.
49 results