Abstract
The genes for the Rhodobacter sphaeroides light-harvesting B875-beta, and B875-alpha polypeptides (pufB and pufA) are closely linked to the genes for the reaction center L and reaction center M polypeptides (pufL and pufM) on what has been termed the puf operon (gene order, pufB, A, L, M). The DNA sequence of the pufB and pufA structural genes from wild-type R. sphaeroides 2.4.1 was determined and aligned with the available amino acid sequence of the wild-type B875-beta and B875-alpha polypeptides. The relative levels of the B875-beta and B875-alpha and the reaction center L and reaction center M polypeptides synthesized in a homologous cell-free transcription-translation system were compared with those found in vivo. Analysis of the gene products produced in vitro with plasmids containing deletions upstream of the pufB structural gene identified a region of DNA required for expression of the B875-beta and B875-alpha polypeptides. These results support the hypothesis that the mapped 5' termini of the large and small puf operon transcripts represent transcription initiation sites.
Full text
PDFImages in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Aagaard J., Sistrom W. R. Control of synthesis of reaction center bacteriochlorophyll in photosynthetic bacteria. Photochem Photobiol. 1972 Feb;15(2):209–225. doi: 10.1111/j.1751-1097.1972.tb06240.x. [DOI] [PubMed] [Google Scholar]
- Bauer C. E., Hesse S. D., Waechter-Brulla D. A., Lynn S. P., Gumport R. I., Gardner J. F. A genetic enrichment for mutations constructed by oligodeoxynucleotide-directed mutagenesis. Gene. 1985;37(1-3):73–81. doi: 10.1016/0378-1119(85)90259-8. [DOI] [PubMed] [Google Scholar]
- Belasco J. G., Beatty J. T., Adams C. W., von Gabain A., Cohen S. N. Differential expression of photosynthesis genes in R. capsulata results from segmental differences in stability within the polycistronic rxcA transcript. Cell. 1985 Jan;40(1):171–181. doi: 10.1016/0092-8674(85)90320-4. [DOI] [PubMed] [Google Scholar]
- Broglie R. M., Hunter C. N., Delepelaire P., Niederman R. A., Chua N. H., Clayton R. K. Isolation and characterization of the pigment-protein complexes of Rhodopseudomonas sphaeroides by lithium dodecyl sulfate/polyacrylamide gel electrophoresis. Proc Natl Acad Sci U S A. 1980 Jan;77(1):87–91. doi: 10.1073/pnas.77.1.87. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chory J., Kaplan S. The in vitro transcription-translation of DNA and RNA templates by extracts of Rhodopseudomonas sphaeroides. Optimization and comparison of template specificity with Escherichia coli extracts and in vivo synthesis. J Biol Chem. 1982 Dec 25;257(24):15110–15121. [PubMed] [Google Scholar]
- Chory J., Muller E. D., Kaplan S. DNA-directed in vitro synthesis and assembly of the form II D-ribulose-1,5-bisphosphate carboxylase/oxygenase from Rhodopseudomonas sphaeroides. J Bacteriol. 1985 Jan;161(1):307–313. doi: 10.1128/jb.161.1.307-313.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Claverie J. M., Sauvaget I. A new protein sequence data bank. Nature. 1985 Nov 7;318(6041):19–19. doi: 10.1038/318019a0. [DOI] [PubMed] [Google Scholar]
- DeMartini M., Inouye M. Interaction between two major outer membrane proteins of Escherichia coli: the matrix protein and the lipoprotein. J Bacteriol. 1978 Jan;133(1):329–335. doi: 10.1128/jb.133.1.329-335.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dierstein R. Synthesis of pigment-binding protein in toluene-treated Rhodopseudomonas capsulata and in cell-free systems. Eur J Biochem. 1984 Feb 1;138(3):509–518. doi: 10.1111/j.1432-1033.1984.tb07945.x. [DOI] [PubMed] [Google Scholar]
- Donohue T. J., Hoger J. H., Kaplan S. Cloning and expression of the Rhodobacter sphaeroides reaction center H gene. J Bacteriol. 1986 Nov;168(2):953–961. doi: 10.1128/jb.168.2.953-961.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gicquel-Sanzey B., Cossart P. Homologies between different procaryotic DNA-binding regulatory proteins and between their sites of action. EMBO J. 1982;1(5):591–595. doi: 10.1002/j.1460-2075.1982.tb01213.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hawley D. K., McClure W. R. Compilation and analysis of Escherichia coli promoter DNA sequences. Nucleic Acids Res. 1983 Apr 25;11(8):2237–2255. doi: 10.1093/nar/11.8.2237. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hoger J. H., Chory J., Kaplan S. In vitro biosynthesis and membrane association of photosynthetic reaction center subunits from Rhodopseudomonas sphaeroides. J Bacteriol. 1986 Mar;165(3):942–950. doi: 10.1128/jb.165.3.942-950.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kaplan S., Cain B. D., Donohue T. J., Shepherd W. D., Yen G. S. Biosynthesis of the photosynthetic membranes of Rhodopseudomonas sphaeroides. J Cell Biochem. 1983;22(1):15–29. doi: 10.1002/jcb.240220103. [DOI] [PubMed] [Google Scholar]
- Lueking D. R., Fraley R. T., Kaplan S. Intracytoplasmic membrane synthesis in synchronous cell populations of Rhodopseudomonas sphaeroides. Fate of "old" and "new" membrane. J Biol Chem. 1978 Jan 25;253(2):451–457. [PubMed] [Google Scholar]
- Maquat L. E., Reznikoff W. S. In vitro analysis of the Escherichia coli RNA polymerase interaction with wild-type and mutant lactose promoters. J Mol Biol. 1978 Nov 15;125(4):467–490. doi: 10.1016/0022-2836(78)90311-x. [DOI] [PubMed] [Google Scholar]
- Maquat L. E., Thornton K., Reznikoff W. S. lac Promoter mutations located downstream from the transcription start site. J Mol Biol. 1980 May 25;139(3):537–549. doi: 10.1016/0022-2836(80)90145-x. [DOI] [PubMed] [Google Scholar]
- Maxam A. M., Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 1980;65(1):499–560. doi: 10.1016/s0076-6879(80)65059-9. [DOI] [PubMed] [Google Scholar]
- Meinhardt S. W., Kiley P. J., Kaplan S., Crofts A. R., Harayama S. Characterization of light-harvesting mutants of Rhodopseudomonas sphaeroides. I. Measurement of the efficiency of energy transfer from light-harvesting complexes to the reaction center. Arch Biochem Biophys. 1985 Jan;236(1):130–139. doi: 10.1016/0003-9861(85)90612-5. [DOI] [PubMed] [Google Scholar]
- Messing J. New M13 vectors for cloning. Methods Enzymol. 1983;101:20–78. doi: 10.1016/0076-6879(83)01005-8. [DOI] [PubMed] [Google Scholar]
- Monger T. G., Parson W. W. Singlet-triplet fusion in Rhodopseudomonas sphaeroides chromatophores. A probe of the organization of the photosynthetic apparatus. Biochim Biophys Acta. 1977 Jun 9;460(3):393–407. doi: 10.1016/0005-2728(77)90080-9. [DOI] [PubMed] [Google Scholar]
- Nano F. E., Shepherd W. D., Watkins M. M., Kuhl S. A., Kaplan S. Broad-host-range plasmid vector for the in vitro construction of transcriptional/translational lac fusions. Gene. 1985;34(2-3):219–226. doi: 10.1016/0378-1119(85)90130-1. [DOI] [PubMed] [Google Scholar]
- Sanger F., Coulson A. R., Barrell B. G., Smith A. J., Roe B. A. Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing. J Mol Biol. 1980 Oct 25;143(2):161–178. doi: 10.1016/0022-2836(80)90196-5. [DOI] [PubMed] [Google Scholar]
- Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sharrock R. A., Gourse R. L., Nomura M. Defective antitermination of rRNA transcription and derepression of rRNA and tRNA synthesis in the nusB5 mutant of Escherichia coli. Proc Natl Acad Sci U S A. 1985 Aug;82(16):5275–5279. doi: 10.1073/pnas.82.16.5275. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Theiler R., Suter F., Pennoyer J. D., Zuber H., Niederman R. A. Complete amino acid sequence of the B875 light-harvesting protein of Rhodopseudomonas sphaeroides strain 2.4.1. Comparison with R26.1 carotenoidless-mutant strain. FEBS Lett. 1985 May 20;184(2):231–236. doi: 10.1016/0014-5793(85)80612-8. [DOI] [PubMed] [Google Scholar]
- Theiler R., Suter F., Wiemken V., Zuber H. The light-harvesting polypeptides of Rhodopseudomonas sphaeroides R-26.1. I. Isolation, purification and sequence analyses. Hoppe Seylers Z Physiol Chem. 1984 Jul;365(7):703–719. doi: 10.1515/bchm2.1984.365.2.703. [DOI] [PubMed] [Google Scholar]
- Tybulewicz V. L., Falk G., Walker J. E. Rhodopseudomonas blastica atp operon. Nucleotide sequence and transcription. J Mol Biol. 1984 Oct 25;179(2):185–214. doi: 10.1016/0022-2836(84)90465-0. [DOI] [PubMed] [Google Scholar]
- Williams J. C., Steiner L. A., Feher G., Simon M. I. Primary structure of the L subunit of the reaction center from Rhodopseudomonas sphaeroides. Proc Natl Acad Sci U S A. 1984 Dec;81(23):7303–7307. doi: 10.1073/pnas.81.23.7303. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Williams J. C., Steiner L. A., Ogden R. C., Simon M. I., Feher G. Primary structure of the M subunit of the reaction center from Rhodopseudomonas sphaeroides. Proc Natl Acad Sci U S A. 1983 Nov;80(21):6505–6509. doi: 10.1073/pnas.80.21.6505. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 1985;33(1):103–119. doi: 10.1016/0378-1119(85)90120-9. [DOI] [PubMed] [Google Scholar]
- Youvan D. C., Bylina E. J., Alberti M., Begusch H., Hearst J. E. Nucleotide and deduced polypeptide sequences of the photosynthetic reaction-center, B870 antenna, and flanking polypeptides from R. capsulata. Cell. 1984 Jul;37(3):949–957. doi: 10.1016/0092-8674(84)90429-x. [DOI] [PubMed] [Google Scholar]
- Youvan D. C., Ismail S. Light-harvesting II (B800-B850 complex) structural genes from Rhodopseudomonas capsulata. Proc Natl Acad Sci U S A. 1985 Jan;82(1):58–62. doi: 10.1073/pnas.82.1.58. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zhu Y. S., Kaplan S. Effects of light, oxygen, and substrates on steady-state levels of mRNA coding for ribulose-1,5-bisphosphate carboxylase and light-harvesting and reaction center polypeptides in Rhodopseudomonas sphaeroides. J Bacteriol. 1985 Jun;162(3):925–932. doi: 10.1128/jb.162.3.925-932.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zhu Y. S., Kiley P. J., Donohue T. J., Kaplan S. Origin of the mRNA stoichiometry of the puf operon in Rhodobacter sphaeroides. J Biol Chem. 1986 Aug 5;261(22):10366–10374. [PubMed] [Google Scholar]