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WO2024131864A1 - Il-10 monomer fusion protein - Google Patents

Il-10 monomer fusion protein Download PDF

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Publication number
WO2024131864A1
WO2024131864A1 PCT/CN2023/140374 CN2023140374W WO2024131864A1 WO 2024131864 A1 WO2024131864 A1 WO 2024131864A1 CN 2023140374 W CN2023140374 W CN 2023140374W WO 2024131864 A1 WO2024131864 A1 WO 2024131864A1
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monomer
antibody
domain
terminus
fusion protein
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PCT/CN2023/140374
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French (fr)
Chinese (zh)
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张映培
霍永庭
芦迪
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广东菲鹏制药股份有限公司
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Publication of WO2024131864A1 publication Critical patent/WO2024131864A1/en

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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/52Cytokines; Lymphokines; Interferons
    • C07K14/54Interleukins [IL]
    • C07K14/5428IL-10
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • A61K38/16Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • A61K38/17Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • A61K38/19Cytokines; Lymphokines; Interferons
    • A61K38/20Interleukins [IL]
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • A61K38/16Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • A61K38/17Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • A61K38/19Cytokines; Lymphokines; Interferons
    • A61K38/20Interleukins [IL]
    • A61K38/2066IL-10
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K47/00Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
    • A61K47/50Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
    • A61K47/51Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
    • A61K47/68Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K47/00Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
    • A61K47/50Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
    • A61K47/51Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
    • A61K47/68Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
    • A61K47/6801Drug-antibody or immunoglobulin conjugates defined by the pharmacologically or therapeutically active agent
    • A61K47/6803Drugs conjugated to an antibody or immunoglobulin, e.g. cisplatin-antibody conjugates
    • A61K47/6811Drugs conjugated to an antibody or immunoglobulin, e.g. cisplatin-antibody conjugates the drug being a protein or peptide, e.g. transferrin or bleomycin
    • A61K47/6813Drugs conjugated to an antibody or immunoglobulin, e.g. cisplatin-antibody conjugates the drug being a protein or peptide, e.g. transferrin or bleomycin the drug being a peptidic cytokine, e.g. an interleukin or interferon
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P29/00Non-central analgesic, antipyretic or antiinflammatory agents, e.g. antirheumatic agents; Non-steroidal antiinflammatory drugs [NSAID]
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/52Cytokines; Lymphokines; Interferons
    • C07K14/54Interleukins [IL]
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/2803Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
    • C07K16/2818Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily against CD28 or CD152
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K19/00Hybrid peptides, i.e. peptides covalently bound to nucleic acids, or non-covalently bound protein-protein complexes
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/62DNA sequences coding for fusion proteins
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/50Immunoglobulins specific features characterized by immunoglobulin fragments
    • C07K2317/52Constant or Fc region; Isotype
    • C07K2317/526CH3 domain
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide

Definitions

  • the present disclosure relates to the field of biomedicine technology, and in particular to an IL-10 monomer fusion protein.
  • Interleukin 10 (IL-10, or IL10), also known as human cytokine synthesis inhibitory factor (CSIF), is an anti-inflammatory cytokine and a homodimeric secretion.
  • IL-10 Interleukin 10
  • CCF human cytokine synthesis inhibitory factor
  • IL-10 dimers bind to IL-10R ⁇ with high affinity, which may affect the targeting effect of the antibody end, thereby causing the design idea to fail. Moreover, if the activity of the antibody end requires a large dose, the side effects of the IL-10 end will still be a thorny problem.
  • the IL-10 monomers are symmetrically or asymmetrically connected to different parts of the antibody molecule.
  • the steric hindrance of the antibody's own structure can isolate the IL-10 monomers.
  • the IL-10 monomer fusion protein When the IL-10 monomer fusion protein is in a free state, even if the IL-10 monomer binds to IL-10R ⁇ , it cannot cause a functional response. Only when the antibody end binds to the target cell can it aggregate the adjacent IL10 monomer-IL10R ⁇ complex through the aggregation effect, and further bind to IL-10R ⁇ to form a complex to generate downstream signals and trigger biological functions.
  • the fusion protein of IL-10 monomers connected to different parts of the antibody molecule still has the problem of in vivo toxicity.
  • the purpose of the present disclosure is to provide an IL-10 monomer fusion protein.
  • the present disclosure provides a fusion protein comprising: an antibody, and an interleukin monomer or a variant thereof inserted into the antibody;
  • the antibody is an immunoglobulin having two identical light chains and two identical heavy chains, wherein the light chain comprises a VL region and a CL region, and the heavy chain comprises a VH region, a CH1 region, a CH2 region, and a CH3 region; and the position at which the interleukin monomer or a variant thereof is inserted into the antibody is as follows (i) or (ii):
  • the interleukin monomer or variant thereof is inserted between the CH2 region and the CH3 region of one of the heavy chains of the antibody;
  • interleukin monomer or variant thereof is inserted between the VL region and the CL region of one of the light chains of the antibody.
  • the present disclosure provides a multispecific binding molecule, which includes the aforementioned fusion protein.
  • the present disclosure provides a nucleic acid encoding the aforementioned fusion protein or the aforementioned multi-specific binding molecule.
  • the present disclosure provides an expression vector comprising the aforementioned nucleic acid.
  • the present disclosure provides a recombinant cell, which carries the aforementioned nucleic acid, the aforementioned expression vector, and expresses the aforementioned fusion protein or the aforementioned multi-specific binding molecule.
  • the present disclosure provides the use of the aforementioned fusion protein, or the aforementioned multi-specific binding molecule, the aforementioned nucleic acid, the aforementioned expression vector or the aforementioned recombinant cell in the preparation of a drug, wherein the aforementioned drug is used to treat or prevent tumors or inflammatory diseases.
  • the present disclosure provides a pharmaceutical composition, which comprises the aforementioned fusion protein, or the aforementioned multi-specific binding molecule, the aforementioned nucleic acid, the aforementioned expression vector or the aforementioned recombinant cell; optionally, the above-mentioned pharmaceutical composition also includes a pharmaceutically acceptable carrier.
  • the present disclosure provides a method for treating, preventing or diagnosing a tumor or inflammatory disease, disorder or condition, comprising administering a therapeutically effective amount of the aforementioned pharmaceutical composition to a subject.
  • Figure 1 is a schematic diagram of the binding mode of natural IL-10 molecules and IL-10 monomers to IL-10 receptors according to an embodiment of the present disclosure, wherein A represents a schematic diagram of the binding mode of natural IL-10 molecules to IL-10 receptors, R1 represents IL-10 receptor ⁇ (IL-10R ⁇ ), and R2 represents IL-10 receptor ⁇ (IL-10R ⁇ ); B represents a schematic diagram of the binding mode of IL-10 monomers to IL-10 receptors, R1 represents IL-10 receptor ⁇ (IL-10R ⁇ ), and IL-10M1 represents IL-10 monomers.
  • FIG2 is a schematic diagram of the binding of antibodies to antigens on target cells and IL-10 monomers to IL-10 receptors in the fusion protein according to an embodiment of the present disclosure.
  • the affinity of IL-10 monomers is relatively weak and the targeting effect is poor.
  • the local enrichment of the antibody can aggregate the IL-10 monomers together to form a dimer IL-10(M)*2 to exert its effect.
  • IL-10R1 represents IL-10 receptor ⁇ (IL-10R ⁇ )
  • IL-10R2 represents represents IL-10 receptor ⁇ (IL-10R ⁇ )
  • Her2 represents human epidermal growth factor receptor, which is an example of an antibody-targeted antigen
  • T-cell represents T cell
  • Tumor represents tumor.
  • FIG3 is a schematic diagram of the positional structure of the IL-10 monomer inserted into the antibody molecule according to an embodiment of the present disclosure (taking the insertion of the IL-10 monomer between the CH2 region and the CH3 region of one of the heavy chains of the antibody as an example), wherein A represents a schematic diagram of the structure of inserting an IL-10 monomer between the CH2 region and the CH3 region of the heavy chain containing the Knob domain of the antibody, and the resulting fusion protein molecule is named R1738; B represents a schematic diagram of the structure of inserting an IL-10 monomer at the C-terminus of the CH3 region of the heavy chain containing the Knob domain of the antibody, and the resulting fusion protein molecule is named R1740; C represents a schematic diagram of the structure of inserting an IL-10 monomer at the C-terminus of the CH3 region of the heavy chain containing the Knob domain of the antibody, and the resulting fusion protein molecule is named R1740; A schematic diagram of the structure in which an
  • Figure 4 is a schematic diagram of the structure of the control molecules (R0987, R0989, R0674, R0862, R1049, R0579, R1187) in the embodiments of the present disclosure, wherein IL-10 in the figure represents an IL-10 monomer, VL represents a light chain variable region, and VH represents a heavy chain variable region.
  • Figure 5 is a graph showing the SDS-PAGE detection results of the fusion proteins R1737, R1738, R1739, and R1740 according to the embodiments of the present disclosure, wherein R refers to reducing SDS-PAGE (reducing SDS-PAGE) and NR refers to non-reducing SDS-PAGE (No-reducing SDS-PAGE).
  • Figure 6 is a graph showing the result of detecting the binding activity of the IL-10 monomer end to IL10R ⁇ by flow cytometry according to the fusion protein of an embodiment of the present disclosure, wherein the abscissa (Ab conc.Log(nM)) represents the antibody concentration (nM), and the ordinate MFI PE represents the mean fluorescence intensity.
  • Ab conc.Log(nM) represents the antibody concentration (nM)
  • MFI PE represents the mean fluorescence intensity.
  • Figure 7 is a graph showing the result of detecting the binding activity of the antibody end to mPD-1 by flow cytometry according to the fusion protein of the embodiment of the present disclosure, wherein the horizontal axis (Ab conc.Log(nM)) represents the antibody concentration (nM), and the vertical axis MFI PE represents the mean fluorescence intensity.
  • Figure 8 is a graph showing the result of detecting the IL-10 monomer end binding activity using the reporter gene method for the fusion protein according to an embodiment of the present disclosure, wherein B is an enlarged view of R1737, R1738, R1739 and R0862 in A, the abscissa (Ab conc.Log ( ⁇ g/mL)) represents the antibody concentration ( ⁇ g/mL), and the ordinate (Lum) represents the luminescence fluorescence intensity; the solid graph represents the signal before enrichment, and the hollow graph represents the signal of the enrichment system.
  • FIG. 9 shows the results of the activity test of each IL10 fusion protein binding to IL10R ⁇ by ELISA.
  • FIG. 10 is the result of detecting the activity of each IL10 fusion protein binding to IL10R ⁇ by ELISA.
  • FIG. 11 shows the results of the activity test of each IL10 fusion protein binding to IL10R ⁇ /IL10R ⁇ by ELISA.
  • kits and reagents obtained from commercial sources are generally performed according to the protocols and/or parameters defined by the manufacturer.
  • an antibody refers to one antibody or more than one antibody.
  • first and second are used for descriptive purposes only and should not be understood as indicating or implying relative importance or implicitly indicating the number of the indicated technical features.
  • a feature defined as “first” or “second” may explicitly or implicitly include at least one of the features.
  • “plurality” means at least two, such as two, three, etc., unless otherwise clearly and specifically defined.
  • the present disclosure provides a fusion protein comprising: an antibody, and an interleukin monomer or a variant thereof inserted into the antibody;
  • the antibody is an immunoglobulin having two identical light chains and two identical heavy chains, wherein the light chain comprises a VL region and a CL region, and the heavy chain comprises a VH region, a CH1 region, a CH2 region, and a CH3 region; and the position at which the interleukin monomer or a variant thereof is inserted into the antibody is as follows (i) or (ii):
  • the interleukin monomer or variant thereof is inserted between the CH2 region and the CH3 region of one of the heavy chains of the antibody;
  • interleukin monomer or variant thereof is inserted between the VL region and the CL region of one of the light chains of the antibody.
  • fusion protein refers to a fusion polypeptide molecule comprising two or more different proteins, wherein the components of the fusion protein are directly linked by peptide bonds or linked to each other by a connecting peptide.
  • polypeptide and “protein” are used interchangeably herein to refer to a polymer of amino acid residues.
  • the term applies to amino acid polymers in which one or more amino acid residues is an artificial chemical mimetic of the corresponding naturally occurring amino acid, as well as to naturally occurring amino acid polymers and non-naturally occurring amino acid polymers.
  • amino acid refers to naturally occurring amino acids and synthetic amino acids, as well as amino acid analogs and amino acid mimetics that function in a manner similar to the naturally occurring amino acids.
  • Naturally occurring amino acids include alanine (Ala; A), arginine (Arg; R), asparagine (Asn; N), aspartic acid (Asp; D), cysteine (Cys; C); glutamic acid (Glu; E), glutamine (Gln; Q), glycine (Gly; G); histidine (His; H), isoleucine (Ile; I), leucine (Leu; L), lysine (Lys; K), methionine (Met; M), phenylalanine (Phe; F), proline (Pro; P), serine (Ser; S), threonine (Thr; T), tryptophan (Trp; W), tyrosine (Tyr; Y), and valine (Val; V).
  • Naturally occurring amino acids include a
  • Amino acid analogs refer to compounds that have the same basic chemical structure as naturally occurring amino acids (i.e., an alpha carbon bound to a hydrogen, carboxyl group, amino group, and R group), such as homoserine, norleucine, methionine sulfoxide, and methionine methylsulfonium. Amino acid analogs typically have modified R groups (e.g., norleucine) or modified peptide backbones, but retain the same basic chemical structure as naturally occurring amino acids. Amino acid mimetics refer to chemical compounds that have a structure that is different from the general chemical structure of an amino acid, but function in a manner similar to that of a naturally occurring amino acid.
  • the term "connector peptide” refers to a peptide segment composed of amino acids, such as glycine and/or serine residues, used alone or in combination to connect the various domains in an antibody.
  • the connecting peptide can be about 1 to about 100 amino acids long, for example, about 1 to 50 amino acids long.
  • “first connecting peptide”, “second connecting peptide”, “third connecting peptide”, “fourth connecting peptide”, “fifth connecting peptide” represent different connecting peptides.
  • the above-mentioned connecting peptide is a flexible connecting peptide.
  • the above-mentioned flexible connecting peptide amino acid sequence includes but is not limited to (GS)n, (GGGGS)nG or (GGGGSSG)n, wherein n is a positive integer equal to or greater than 1, for example, n is a positive integer between 1-10.
  • the amino acid sequence of the flexible connecting peptide can be GSGSGSGS (SEQ ID NO:6), GGGGSG (SEQ ID NO:12), GSGSGSGGGGSSG (SEQ ID NO:13), GGGGSSG (SEQ ID NO:16), or GGGGSGGGGSGGGGSGGGGSG (SEQ ID NO:17).
  • spacer peptide refers to a peptide that is inserted into a specific protein and used to change the structure and/or function of the protein. In this sense, it is different from the connecting peptide that connects other fusion partners, but the connecting peptide can be used as a spacer peptide.
  • the spacer peptide has an amino acid sequence as shown in SEQ ID NO:4.
  • the term "antibody” is an immunoglobulin molecule that can specifically bind to an antigen, including two light chains with a relatively light molecular weight and two heavy chains with a relatively heavy molecular weight, and the heavy chain (H chain) and the light chain (L chain) are connected by a disulfide bond to form a tetrapeptide chain molecule.
  • the amino acid sequence of the amino terminal (N terminal) of the peptide chain varies greatly, which is called the variable region (V region), and the carboxyl terminal (C terminal) is relatively stable and varies little, which is called the constant region (C region).
  • V regions of the L chain and the H chain are respectively called VL and VH
  • the C region of the L chain is CL
  • the C region of the H chain includes the CH1 region, the CH2 region and the CH3 region
  • the CH1 region and the CH2 region are generally connected by a hinge region.
  • the term "hinge” refers to the region between the CH1 region and the CH2 region of an immunoglobulin heavy chain, which includes inter-H chain disulfide bonds, is rich in proline, does not form an ⁇ -helix, is prone to stretching and a certain degree of distortion, and is conducive to the complementary binding between the antigen binding site of the antibody and the antigen epitope.
  • interleukin refers to a group of cytokines with complex immunomodulatory functions. In addition, they are also involved in a variety of physiological and pathological reactions of the body, such as playing an important role in inflammatory reactions. At least 38 interleukins have been discovered, named IL-1 to IL-38.
  • the term "monomer” refers to one of the single polypeptide chains of an aggregate.
  • an interleukin monomer it refers to one of the two peptide chains of certain interleukins that usually exist in the form of dimers.
  • the term "dimer” refers to a class of substances that appear in a pair.
  • Interleukins with a dimer structure in the natural state include but are not limited to IL-10 (Kang Mingchao, Lu Yingchun, et al. Interleukin-10 polypeptide conjugates, dimers and uses thereof), IL-5 (Clutterbuck EJ, Hirst EM, Sanderson CJ. Human interleukin-5 (IL-5) regulates the production of eosinophils in human bone marrow cultures: comparison and interaction with IL-1, IL-3, IL-6, and GMCSF. Blood. 1989 May 1; 73(6):1504-12.
  • the native IL-5 monomer has the amino acid sequence shown below:
  • IL-10 and "IL10” are used interchangeably.
  • the IL-10 molecule in the natural state usually exists in a dimer structure (including two natural IL-10 monomers, and a single natural IL-10 monomer has an amino acid sequence as shown in SEQ ID NO: 3).
  • the binding mode of the natural IL-10 molecule to the IL-10 receptor (IL-10R) is shown in Figure 1-A.
  • clinical IL-10 drugs lack targeting, and drug molecules are easily off-target, which not only makes it difficult to exert the efficacy but also easily produces side effects.
  • the activity of IL-10 monomer on IL-10R ⁇ is 10 times weaker than that of natural IL-10 dimer (reference for specific experimental data: J Biol Chem.
  • IL-10 monomer is inserted into a specific position of one of the light chains or heavy chains of an antibody to form an "asymmetric structure" to prepare an asymmetric IL-10 monomer fusion protein.
  • the IL-10 monomer fusion protein designed in the present disclosure in the absence of target cell aggregation, the IL-10 monomer has only very weak binding with IL-10R ⁇ , and there is even no IL-10 downstream signal. Only after the antibody end binds to the target cell can it aggregate the adjacent IL-10 monomer-IL-10R ⁇ complex through the aggregation effect, and further bind to IL-10R ⁇ to form a complex to generate downstream signals and trigger biological functions (taking the insertion of IL-10 monomer between the CH2 region and CH3 region of one of the heavy chains of the antibody as an example, its mechanism of action is shown in Figure 2).
  • the asymmetric IL-10 monomer fusion protein Compared with the IL-10 monomer fusion protein, the asymmetric IL-10 monomer fusion protein has only one IL-10 monomer, so the asymmetric IL-10 monomer fusion protein does not have the same dosage limit as the normal IL-10 molecule or its antibody fusion protein.
  • the asymmetric IL-10 monomer fusion protein can have a larger dosage, which can also provide a wider space for the fused antibody end (the clinical doses of different antibodies vary. If the dose limit of IL-10 is too low, it will seriously limit the antibody target selection of the asymmetric IL-10 monomer fusion protein) to function.
  • IL-5, IL-12, IL-23, IL-25, IL-27 and IL-35 can also be applied to the fusion protein of the present disclosure to achieve similar effects as IL-10. That is, an interleukin monomer is inserted into a specific position of one of the heavy chains or light chains of the antibody, and before the antibody binds to the target cell, these interleukin monomers cannot activate downstream signals; after the antibody binds to the target cell, the interleukin monomers aggregate to form dimers and bind to the corresponding receptors, thereby exerting biological functions.
  • variant encompasses both naturally occurring variants and non-naturally occurring variants, and generally refers to one or more compounds having a native polypeptide sequence and structure, which have one or more amino acid additions, substitutions (conservative in nature) and/or deletions relative to the native molecule.
  • Interleukin "variant” and “modified” interleukin are used interchangeably and refer to an equivalent term for an interleukin amino acid sequence that has one or more amino acid additions, substitutions (conservative in nature) and/or deletions relative to a native interleukin molecule or has at least 95% (e.g., 95%, 96%, 97%, 98% or 99%) sequence identity with the amino acid sequence of a native interleukin.
  • sequence identity refers to the degree (percentage) to which the amino acids/nucleic acids of the two sequences are identical at equivalent positions when the two sequences are optimally aligned (introducing gaps, if necessary, to obtain the maximum sequence identity percentage, and not considering any conservative substitutions as part of the sequence identity).
  • sequence identity can be achieved by techniques known in the art, for example, using publicly available computer software such as BLAST, BLAST-2, ALIGN, ALIGN-2 or Megalign (DNASTAR) software. Those skilled in the art can determine the parameters suitable for measuring the alignment, including any algorithm required to achieve maximum alignment over the full length of the compared sequences.
  • IL-10 variant refers to an IL-10 amino acid sequence that has at least 95% (e.g., 95%, 96%, 97%, 98% or 99%) sequence identity with the amino acid sequence of wild-type IL-10 (SEQ ID NO: 3).
  • the interleukin monomer or variant thereof is inserted into the antibody at position (i); the heavy chain of the antibody comprises a modification that prevents heavy chain mispairing.
  • the four polypeptide chains of the antibody in the invention include two heavy chains and light chains with different structures, after inserting an interleukin monomer or a variant thereof into the heavy chain or light chain, when the fusion protein disclosed in the present invention is prepared by genetic engineering technology, the four polypeptide chains can randomly generate a variety of possible structural combinations during the assembly process, but only one is the target product (i.e., the correctly paired product), and the remaining products are invalid products or even by-products (i.e., incorrectly paired products) generated by mismatching.
  • a modification that prevents mismatching of the heavy chains i.e., a modification that prevents pairing of two identical heavy chains, can be introduced into the two heavy chains of the antibody.
  • modification to prevent mispairing of heavy chains refers to some designs or modifications used by those skilled in the art to prevent mispairing of heavy chains, including but not limited to KIH (Knob-In-Hole), SEEDbodies (trand-exchange engineered domain), cFAE (arm exchange), XmAb, leucine zipper technology (LUZ-Y), etc.
  • KIH technology refers to a mutation in the CH3 region of one of the heavy chains of an antibody to form a protruding "knob"-like structure (Knob), and a mutation in the CH3 region of another heavy chain to form a concave "hole”-like structure (Hole).
  • the knob-hole design is conducive to the correct assembly of the antibody heavy chain.
  • the heavy chain containing the Knob is paired with the heavy chain containing the Hole, the two heavy chains containing the Knob are not paired with each other, and the two heavy chains containing the Hole are not paired with each other.
  • the CH3 region of one heavy chain of the antibody contains a Knob domain
  • the CH3 region of the other heavy chain of the antibody contains a Hole domain
  • the Knob domain and the Hole domain pair to form a heavy chain anti-mismatching structure
  • the CH3 region of the heavy chain containing the Knob domain comprises the amino acid mutations: T366W, K392D and K409D
  • the CH3 region of the heavy chain containing the Hole domain comprises the amino acid mutations: L368R, D399K and Y407A.
  • mutation "AxxB” means that the amino acid A at position xx is mutated to the amino acid B.
  • T366W means that the threonine (Thr; T) at position 366 is mutated to tryptophan (Trp; W).
  • the above interleukin monomer or variant thereof is inserted into a heavy chain containing a Knob domain.
  • the interleukin monomer or variant thereof is connected to the heavy chain containing the Knob domain of the antibody via a first connecting peptide.
  • the N-terminus of the interleukin monomer or its variant is connected to the C-terminus of the CH2 region of the heavy chain containing the Knob domain of the antibody through a first connecting peptide
  • the C-terminus of the interleukin monomer or its variant is connected to the N-terminus of the CH3 region of the heavy chain containing the Knob domain of the antibody through a first connecting peptide.
  • the structure of the heavy chain containing the Knob domain of the above-mentioned antibody from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-L1-Int-L1-CH3 (Knob); wherein L1 represents: the first connecting peptide, and Int represents: an interleukin monomer or a variant thereof.
  • the structure of the heavy chain containing the Hole domain of the above-mentioned antibody from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3 (Hole).
  • the structure of the light chain of the above antibody from N-terminus to C-terminus is as follows: VL-CL.
  • the above-mentioned first connecting peptide has an amino acid sequence shown in SEQ ID NO:6.
  • the interleukin monomer or variant thereof is inserted into the position of the antibody (ii); the antibody comprises a design for preventing light chain mispairing and a design for preventing heavy chain mispairing.
  • the fusion protein of the present invention is prepared by genetic engineering technology, if the interleukin monomer or its variant is inserted into one of the light chains of the above-mentioned antibody, a modification that prevents light chain mispairing and heavy chain mispairing can be introduced into the antibody: that is, two identical light chains containing the interleukin monomer or its variant are prevented from pairing with two heavy chains, and two identical light chains not containing the interleukin monomer or its variant are prevented from pairing with two heavy chains.
  • modification to prevent light chain mispairing refers to some designs or modifications used by those skilled in the art to prevent light chain mispairing, including but not limited to Titin-Obscurin, CrossMab, etc.
  • the core design of Titin-Obscurin is the introduction of a pair of interacting proteins, namely Titin (titin) and Obscurin (obscurin), replacing CH1 and CL on one side of the antibody with Titin and Obscurin, respectively, to avoid light chain mispairing.
  • the CL region of one light chain of the above-mentioned antibody is replaced by an Obscurin domain
  • the CH1 region of one heavy chain of the above-mentioned antibody is replaced by a Titin domain
  • the Obscurin domain is paired with the Titin domain to form a light chain anti-mispairing structure
  • the CH3 region of the heavy chain containing the Titin domain of the above-mentioned antibody contains a Knob domain
  • the CH3 region of the other heavy chain of the above-mentioned antibody contains a Hole domain
  • the Knob domain is paired with the Hole domain to form a heavy chain anti-mispairing structure.
  • the Obscurin domain has an amino acid sequence as shown in SEQ ID NO: 10
  • the Titin domain has an amino acid sequence as shown in SEQ ID NO: 11;
  • the CH3 region of the heavy chain containing the Knob domain comprises the mutations: T366W, K392D and K409D
  • the CH3 region of the heavy chain containing the Hole domain comprises the mutations: L368R, D399K and Y407A.
  • the above interleukin monomer or variant thereof is inserted into a light chain containing an obscurin domain.
  • the interleukin monomer or variant thereof is connected to the Obscurin domain of the light chain of the antibody via a third connecting peptide; and the Titin domain of the antibody is connected to the VH region via a second connecting peptide.
  • the N-terminus of the interleukin monomer or variant thereof is connected to the C-terminus of the VL region of the light chain containing the Obscurin domain of the above-mentioned antibody via a first connecting peptide, and the C-terminus of the interleukin monomer or variant thereof is connected to the N-terminus of the Obscurin domain of the light chain of the above-mentioned antibody via a third connecting peptide;
  • the N-terminus of the titin domain is connected to the C-terminus of VH via a second connecting peptide
  • the structure of the light chain containing the Obscurin domain of the above-mentioned antibody from N-terminus to C-terminus is as follows: VL-L1-Int-L3-Obs, wherein L1 represents: the first connecting peptide, L3 represents: the third connecting peptide, Int represents: an interleukin monomer or a variant thereof, and Obs represents: an Obscurin domain.
  • the structure of the light chain of the above antibody without the Obscurin domain from N-terminus to C-terminus is as follows: VL-CL.
  • the structure of the heavy chain containing the Titin domain and the Knob domain of the above-mentioned antibody from N-terminus to C-terminus is as follows: VH-L2-Tit-CH2-CH3, wherein L2 represents: the second connecting peptide, and Tit represents: the Titin domain.
  • the structure of the heavy chain containing the Hole domain of the above-mentioned antibody from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3.
  • the second connecting peptide has an amino acid sequence as shown in SEQ ID NO:12
  • the third connecting peptide has an amino acid sequence as shown in SEQ ID NO:13.
  • the above interleukin is selected from IL-10 monomer, IL-5 monomer, IL-12 monomer, IL-23 monomer, IL-25 monomer, IL-27 monomer, and IL-35 monomer.
  • the interleukin monomer is an IL-10 monomer.
  • the IL-10 monomer is a natural IL-10 monomer or a modified IL-10 monomer.
  • the above-mentioned natural IL-10 monomer has an amino acid sequence as shown in SEQ ID NO:3.
  • the modified IL-10 monomer has a spacer peptide inserted between two amino acid sites in the natural IL-10 monomer molecule sequence;
  • the modified IL-10 monomer has a spacer peptide inserted between the 116N and 117K sites of the natural IL-10 monomer molecule sequence;
  • the spacer peptide comprises the amino acid sequence shown in SEQ ID NO:4;
  • the modified IL-10 monomer lacks the first two amino acids at the N-terminus of the natural IL-10 monomer molecule sequence
  • the modified IL-10 monomer has an amino acid sequence as shown in SEQ ID NO:5.
  • the antibody in the above fusion protein specifically binds to immune checkpoints and/or tumor antigens.
  • immune checkpoint refers to a class of immunosuppressive molecules that are expressed on immune cells and can regulate the degree of immune activation. They play an important role in preventing the occurrence of autoimmunity. Overexpression, overfunction or poor immunosuppression of immune checkpoint molecules can lead to abnormal immune function of the body.
  • the above-mentioned immune checkpoint molecules are selected from PD-1, CD47, TIGIT, CD137, CD134, KIR, LAG-3, PD-L1, CTLA-4, B7.1, B7H3, CCRY, OX-40 and CD40.
  • tumor antigen refers to an antigenic polypeptide or protein derived from or associated with a tumor or cancer disease, typically derived from a tumor/cancer cell, optionally a mammalian tumor/cancer cell, and may be located in or on the surface of a tumor cell derived from a mammal, optionally derived from a human, such as a systemic or solid tumor.
  • Tuor antigens typically include tumor-specific antigens (TSAs) and tumor-associated antigens (TAAs). TSAs are typically caused by tumor-specific mutations and are specifically expressed by tumor cells. TAAs are typically presented by tumor cells and "normal" (healthy, non-tumor) cells.
  • the above tumor antigen is selected from GUCY2C, MSLN, Claudin18.2, GPC3, EGFR, HER2, CEA, GD2, EGFRVIII, MUC1, PRLR, CLCA1, MUC12, GPR35, CR1L, MUC17, TMPRSS11B, MUC21, TMPRSS1IE, CD207, SLC30A8, CFC1, SLC12A3, SSTR1, GPR27, FZD10, TSHR, SIGLEC15, SLC6A3, KISSIR, QRFPR, GPR119, CLDN6, UPK2, ADAM12, S LC45A3, ACPP, MUC21, MUC16, MS4A12, ALPP, EphA2, FAP, IL13-Ra2, PSMA, ROR1, VEGFR-II, FR-a, EpCAM, EGFRVII, tMUC1, PSCA, FCER2, GPR18, FCRLA, CXCR5, FCRL3, FCRL2,
  • the above-mentioned antibodies specifically bind to PD-1.
  • PD-1 refers to programmed death receptor 1, which belongs to the immunoglobulin superfamily and acts as a co-inhibitory receptor to negatively regulate the immune system.
  • PD-1 and PD1 are used interchangeably.
  • PD-1 is a member of the CD28/CTLA-4 family and has two known ligands, including PD-L1 and PD-L2.
  • PD-1 and PD-L1 bind to initiate programmed death of T cells, allowing tumor cells to obtain immune escape.
  • Immunomodulation targeting PD-1 and PD-L1 is of great significance for anti-tumor, anti-infection, anti-autoimmune disease and organ transplant survival.
  • the representative amino acid sequence of human PD-1 is disclosed in NCBI Accession No.: NP 005009.2, and the representative nucleic acid sequence encoding human PD-1 is shown in NCBI Accession No.: NM 005018.2.
  • the present disclosure provides a multispecific binding molecule, which includes the aforementioned fusion protein.
  • multispecific binding molecule refers to a multispecific molecule capable of binding to two or more different target antigens or epitopes.
  • the present disclosure provides a nucleic acid encoding the aforementioned fusion protein.
  • nucleic acid is used interchangeably with the term “polynucleotide” herein, and refers to deoxyribonucleotides or ribonucleotides and polymers thereof in single-stranded or double-stranded form, covering nucleic acids containing known nucleotide analogs or modified backbone residues or connections, the nucleic acids are synthetic, naturally occurring and non-naturally occurring, have similar binding properties to reference nucleic acids, and are metabolized in a manner similar to reference nucleotides.
  • Nucleic acids encoding polypeptides or fusion proteins refer to one or more nucleic acid molecules encoding polypeptides or fusion proteins, including such one or more nucleic acid molecules in a single vector or separate vectors, and such one or more nucleic acid molecules present in one or more positions in a host cell. Unless otherwise indicated, a specific nucleic acid sequence also implicitly covers conservatively modified variants thereof (e.g., degenerate codon substitutions) and complementary sequences as well as explicitly indicated sequences.
  • the present disclosure provides an expression vector containing the aforementioned nucleic acid.
  • the term "vector” refers to a vehicle into which a genetic element (e.g., the aforementioned nucleic acid molecule) can be operatively inserted and the genetic element can be expressed, such as producing a protein, RNA or DNA encoded by the genetic element, or replicating the genetic element.
  • the vector can be used to transform, transduce or transfect a host cell so that the genetic element it carries is expressed in the host cell.
  • vectors include: plasmids, phagemids, cosmids, artificial chromosomes such as yeast artificial chromosomes (YAC), bacterial artificial chromosomes (BAC) or P1-derived artificial chromosomes (PAC), phages such as lambda phage or M13 phage, and animal viruses, etc.
  • the vector may contain a variety of elements for controlling expression, including promoter sequences, transcription initiation sequences, enhancer sequences, selection elements and reporter genes.
  • the vector may also contain a replication initiation site.
  • the vector may also include components that assist it in entering the cell, including, but not limited to, viral particles, liposomes or protein shells.
  • the vector may be an expression vector or a cloning vector.
  • the vectors e.g., expression vectors
  • the vectors contain a nucleic acid sequence encoding a fusion protein as described in the present disclosure, at least one promoter (e.g., SV40, CMV, EF-1 ⁇ ) operably linked to the nucleic acid sequence, and at least one selection marker.
  • the present disclosure provides a recombinant cell, which carries the aforementioned nucleic acid, the aforementioned expression vector, expresses the aforementioned fusion protein, or expresses the aforementioned multi-specific binding molecule.
  • the term "recombinant cell” refers to a cell into which an exogenous polynucleotide and/or vector can be or has been introduced.
  • the recombinant cell contains the vector, which can be introduced into a mammalian cell to construct a recombinant cell, and then the recombinant cell is used to express the antibody or antigen-binding fragment provided by the present disclosure.
  • the recombinant cell is cultured to obtain the corresponding antibody or fusion protein.
  • the mammalian cell that can be used can be a CHO cell, etc.
  • the present disclosure provides the use of the aforementioned fusion protein, the aforementioned multi-specific binding molecule, the aforementioned nucleic acid, the aforementioned expression vector or the aforementioned recombinant cell in the preparation of a drug, wherein the aforementioned drug is used to treat, prevent or diagnose tumors or inflammatory diseases.
  • treatment or prevention refers to clinical intervention that attempts to alter the natural course of the individual being treated, and can be performed for prevention or during the course of clinical pathology.
  • desired effects of treatment or prevention include, but are not limited to, preventing the occurrence or recurrence of the disease, alleviating symptoms, alleviating/reducing any direct or indirect pathological consequences of the disease, preventing metastasis, reducing the rate of disease progression, ameliorating or alleviating the disease state, and regression or improved prognosis.
  • the term "diagnosis” refers to the identification, disclosure, identification and/or definition of the location of the pathogenic process of a pathological state, disease or condition.
  • the pharmaceutical composition of the present disclosure when administered to a subject or contacted with a sample from a subject, helps diagnose cancer, tumor formation or condition.
  • cancer and tumor are used interchangeably and refer to an abnormal mass of cells in a multicellular organism caused by uncontrolled and progressive excessive cell division. Uncontrolled growth can cause these cells to invade, enter, and even destroy adjacent tissues. Cancer cells can also spread to other locations, which can lead to the formation of metastases.
  • inflammatory disease refers to a disease or condition characterized by abnormal inflammation (eg, increased levels of inflammation compared to a control, such as a healthy person not suffering from the disease).
  • inflammatory diseases include, but are not limited to, autoimmune diseases, arthritis, rheumatoid arthritis, psoriatic arthritis, juvenile idiopathic arthritis, multiple sclerosis, systemic lupus erythematosus (SLE), myasthenia gravis, juvenile onset diabetes, type 1 diabetes, Guillain-Barré syndrome, Hashimoto's encephalitis, Hashimoto's thyroiditis, ankylosing spondylitis, psoriasis, Sjögren's syndrome, vasculitis, glomerulonephritis, autoimmune thyroiditis, Behcet's disease, Crohn's disease, ulcerative colitis, bullous pemphigoid, sarcoidosis, ichthyosis, Graves' o
  • the present disclosure provides a pharmaceutical composition comprising the aforementioned fusion protein, the aforementioned multispecific binding molecule, the aforementioned nucleic acid, the aforementioned expression vector or the aforementioned recombinant cell.
  • the term "pharmaceutical composition” is in a form that permits the biological activity of the active ingredient to be effective, and does not contain additional ingredients that are unacceptably toxic to a subject to which the composition would be administered.
  • the above-mentioned pharmaceutical composition further comprises a pharmaceutically acceptable carrier.
  • pharmaceutically acceptable carrier refers to ingredients in pharmaceutical formulations that are different from the active ingredient and are non-toxic to the subject, including but not limited to buffers, excipients, stabilizers, preservatives, or any physiologically compatible solvents, etc.
  • the present disclosure provides a method for treating, preventing or diagnosing a tumor or inflammatory disease, disorder or condition, comprising administering a therapeutically effective amount of the aforementioned pharmaceutical composition to a subject.
  • the term "subject” or “patient” refers to a mammalian subject or patient. Unless otherwise indicated, the terms “patient” or “subject” are used interchangeably herein. Exemplary subjects include, but are not limited to, humans, monkeys, dogs, cats, mice, rats, cattle, horses, camels, birds, goats, and sheep. In certain embodiments, the subject is a human. In some embodiments, the subject is a human suspected of having cancer, an autoimmune disease or condition, and/or an infection.
  • administering refers to the contact of an exogenous drug, therapeutic agent, diagnostic agent or composition with the animal, human, subject, cell, tissue, organ or biological fluid.
  • an effective amount generally refers to an amount sufficient to reduce the severity and/or frequency of symptoms, eliminate these symptoms and/or potential causes, prevent the occurrence of symptoms and/or their potential causes, and/or improve or ameliorate damage (e.g., lung disease) caused by or associated with a disease state.
  • an effective amount is a therapeutically effective amount or a prophylactically effective amount.
  • the term "therapeutically effective amount” is an amount sufficient to treat a disease state or symptom, particularly a state or symptom associated with the disease state, or otherwise prevent, hinder, delay or reverse the progression of the disease state or any other undesirable symptoms associated in any way with the disease.
  • prophylactically effective amount is an amount that, when administered to a subject, will have a predetermined preventive effect, such as preventing or delaying the onset (or recurrence) of the disease state, or reducing the likelihood of the onset (or recurrence) of the disease state or associated symptoms. Complete treatment or prevention may not occur after administration of one dose, but may occur after administration of a series of doses. Thus, a therapeutically or prophylactically effective amount may be administered in one or more administrations.
  • the terms “therapeutically effective amount” and “prophylactically effective amount” may vary depending on a variety of factors, such as the disease state, age, sex, and weight of the individual, and the ability of the therapeutic agent or combination of therapeutic agents to elicit a desired response in the individual.
  • Exemplary indicators of an effective therapeutic agent or combination of therapeutic agents include, for example, improved health status of the patient.
  • IL-10 monomers are inserted into different positions of antibody molecules (this embodiment takes anti-PD-1 antibody as an example, and the heavy chain and light chain amino acid sequences of the anti-PD-1 antibody used in the present disclosure are shown in SEQ ID NO: 1 and SEQ ID NO: 2, respectively) to obtain a fusion protein, wherein the specific experimental operations for the construction of IL-10 monomer molecules mainly refer to the "Molecular Cloning Experiment Guide”.
  • the amino acid sequence of the natural IL-10 monomer molecule (i.e., IL-10WT) is shown in SEQ ID NO:3, and a spacer peptide with an amino acid sequence as shown in SEQ ID NO:4 is inserted between the two sites 116N and 117K of the natural IL-10 monomer molecule sequence, and the first two amino acids at the N-terminus of the natural IL-10 monomer are removed, thereby forming the modified IL-10 monomer (i.e., IL-10M) of the embodiment of the present disclosure, whose sequence is shown in SEQ ID NO:5.
  • IL-10 monomer (hereinafter also referred to as “IL-10 monomer” or “IL-10M”) of this example is:
  • the N-terminus of the IL-10 monomer is connected to the C-terminus of the CH2 region of the heavy chain containing the Knob domain of the antibody through a peptide having an amino acid sequence as shown in SEQ ID NO:6 (i.e., the first connecting peptide, L1, linker1), and the C-terminus of the IL-10 monomer is connected to the N-terminus of the CH3 region of the heavy chain containing the Knob domain of the antibody through the first connecting peptide.
  • the resulting exemplary fusion protein R1738 has an amino acid sequence as shown in SEQ ID NO:7 (heavy chain containing the Knob domain), SEQ ID NO:8 (heavy chain containing the Hole domain) and SEQ ID NO:9 (light chain), and the specific structure of the fusion protein is shown in Figure 3A (the insertion position of the IL-10 monomer is shown in the figure).
  • the structure of the heavy chain containing the Knob domain in the fusion protein R1738 from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-L1-IL10-L1-CH3, where L1 represents: the first connecting peptide
  • the structure of the heavy chain containing the Hole domain in the fusion protein R1738 from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3
  • the structure of the light chain of fusion protein R1738 from N-terminus to C-terminus is as follows: VL-CL
  • the CL region of one light chain of the antibody is replaced by an Obscurin domain having an amino acid sequence as shown in SEQ ID NO:10
  • the CH1 region of one heavy chain of the antibody is replaced by a Titin domain having an amino acid sequence as shown in SEQ ID NO:11
  • the N-terminus of the Titin domain is connected to the C-terminus of the VH via a peptide segment having an amino acid sequence as shown in SEQ ID NO:12 (i.e., the second connecting peptide, L2)
  • the Obscurin domain and the Titin domain are paired to form a light chain anti-mismatch structure
  • EU numbering three amino acid sites of the CH3 of the heavy chain containing the Knob domain in the antibody are mutated as T366W, K392D and K409D to form a Knob domain
  • three amino acid sites of the CH3 of the other heavy chain are mutated as L368R, D399K and Y407A to form a Hole domain
  • the N-terminus of the IL-10 monomer is connected to the C-terminus of the VL region of the light chain containing the Obscurin domain of the antibody through the first connecting peptide, and the C-terminus of the IL-10 monomer is connected to the N-terminus of the Obscurin domain of the antibody through a peptide segment having an amino acid sequence as shown in SEQ ID NO: 13 (i.e., the third connecting peptide, L3).
  • the resulting exemplary fusion protein R1737 has an amino acid sequence as shown in SEQ ID NO: 14 (light chain containing the Obscurin domain) and SEQ ID NO: 9 (light chain without the Obscurin domain), SEQ ID NO: 15 (heavy chain containing the Titin domain and the Knob domain), and SEQ ID NO: 8 (heavy chain containing the Hole domain).
  • SEQ ID NO: 14 light chain containing the Obscurin domain
  • SEQ ID NO: 9 light chain without the Obscurin domain
  • SEQ ID NO: 15 dasheptin domain
  • SEQ ID NO: 8 dasheavy chain containing the Hole domain
  • the specific structure of the fusion protein is shown in Figure 3C (the insertion position of the IL-10 monomer is shown in the figure).
  • the structure of the light chain containing the Obscurin domain in the fusion protein R1737 from the N-terminus to the C-terminus is as follows: VL-L1-IL10-L3-Obs, where L1 represents: the first connecting peptide, L3 represents: the third connecting peptide, and Obs represents: the Obscurin domain
  • VL-CL The structure of the light chain without the obscurin domain in the fusion protein R1737 from N-terminus to C-terminus is as follows: VL-CL
  • the structure of the heavy chain containing the titin domain and the knob domain in the fusion protein R1737 from the N-terminus to the C-terminus is as follows: VH-L2-Tit-hinge-CH2-CH3, where L2 represents: the third connecting peptide, and Tit represents: the titin domain
  • the structure of the heavy chain containing the Hole domain in the fusion protein R1737 from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3
  • the CL region of one light chain of the antibody is replaced by an Obscurin domain having an amino acid sequence as shown in SEQ ID NO: 10, and the N-terminus of the Obscurin domain is connected to the C-terminus of VL via a peptide segment having an amino acid sequence as shown in SEQ ID NO: 16 (i.e., the fourth connecting peptide, L4), and the CH1 region of one heavy chain of the antibody is replaced by a Titin domain having an amino acid sequence as shown in SEQ ID NO: 11, and the N-terminus of the Titin domain is connected to the C-terminus of VH via a second connecting peptide segment.
  • the Obscurin domain is connected by a connecting peptide, and the Titin domain is paired with the light chain anti-mismatching structure; according to EU numbering, the three amino acid sites of CH3 of the heavy chain containing the Knob domain in the antibody are mutated: T366W, K392D and K409D to form the Knob domain, and the three amino acid sites of CH3 of the other heavy chain are mutated: L368R, D399K and Y407A to form the Hole domain, and the Knob domain is paired with the Hole domain to form the KIH heavy chain anti-mismatching structure.
  • the N-terminus of the IL-10 monomer was connected to the C-terminus of the Obscurin domain of the light chain of the antibody through a peptide having an amino acid sequence as shown in SEQ ID NO: 17 (i.e., the fifth connecting peptide, L5).
  • the resulting control fusion protein R1739 has an amino acid sequence as shown in SEQ ID NO: 18 (light chain containing the Obscurin domain), SEQ ID NO: 9 (light chain without the Obscurin domain), SEQ ID NO: 15 (heavy chain containing the Knob domain and the Titin domain), and SEQ ID NO: 8 (heavy chain containing the Hole domain).
  • the specific structure of the fusion protein is shown in FIG3D (the insertion position of the IL-10 monomer is shown in the figure).
  • the structure of the light chain containing the Obscurin domain in the fusion protein R1739 from the N-terminus to the C-terminus is as follows: VL-L4-Obs-L5-IL10, wherein L4 represents: the fourth connecting peptide, Obs represents: the Obscurin domain, and L5 represents: the fifth connecting peptide
  • VL-CL The structure of the light chain without the obscurin domain in the fusion protein R1739 from N-terminus to C-terminus is as follows: VL-CL
  • the structure of the heavy chain containing the titin domain and the knob domain in the fusion protein R1739 from the N-terminus to the C-terminus is as follows: VH-L2-Tit-hinge-CH2-CH3, where Tit represents: titin domain
  • the structure of the heavy chain containing the Hole domain in the fusion protein R1739 from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3
  • the N-terminus of the IL-10 monomer is connected to the C-terminus of the CH3 region of the heavy chain containing the Knob domain of the antibody through the fifth connecting peptide.
  • the resulting exemplary fusion protein R1740 has an amino acid sequence as shown in SEQ ID NO: 19 (heavy chain containing the Knob domain), SEQ ID NO: 8 (heavy chain containing the Hole domain) and SEQ ID NO: 9 (light chain), and the specific structure of the fusion protein is shown in Figure 3B (the insertion position of the IL-10 monomer is shown in the figure).
  • the structure of the heavy chain containing the Knob domain in the fusion protein R1740 from the N-terminus to the C-terminus is as follows: VH-CH1-hinge-CH2-CH3-L5-IL10, where L5 represents: the fifth connecting peptide
  • the structure of the heavy chain containing the Hole domain in the fusion protein R1740 from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3
  • the structure of the light chain of fusion protein R1740 from N-terminus to C-terminus is as follows: VL-CL
  • the plasmid containing the target gene is constructed and prepared by conventional methods.
  • the plasmid containing the target gene is introduced into the Expi293 host cell after forming a cationic complex with the transfection reagent PEI.
  • the exogenous gene on the plasmid is transcribed and translated in the cell, thereby obtaining the fusion protein.
  • the specific experimental operation is as follows:
  • Expi293 host cells were cultured at 37°C, 8% carbon dioxide, and 130rpm. Before transfection, 2E6 cells were inoculated into a 1L shake flask by cell counting. The culture system was about 300mL.
  • the transient cell expression solution was centrifuged at 9000rpm/20min, the supernatant was collected, and then sterilized and filtered through a 0.22 ⁇ m filter membrane.
  • ProA affinity chromatography was used for purification. The process is as follows: using an AKTA york 150 chromatography device, the chromatography column (such as MabSelectSuRe LX, GE) was equilibrated with at least 5CV equilibration buffer (10mM PBS), and the sample was loaded onto the chromatography column so that the target protein was adsorbed on the chromatography column while other impurities penetrated and separated.
  • R0987 has two identical light chains and two identical heavy chains, and an IL-10 monomer is inserted between the VL region and the CL region of each of the two light chains. Its structural schematic diagram is shown in FIG4 , wherein the amino acid sequence of one of the light chains is shown in SEQ ID NO: 21:
  • amino acid sequence of one heavy chain is shown in SEQ ID NO: 20:
  • R0989 has two identical heavy chains, with an IL-10 monomer inserted between the CH2 region and the CH3 region of each heavy chain. Its structural schematic diagram is shown in FIG4 , wherein the amino acid sequence of one heavy chain sequence is shown in SEQ ID NO: 22:
  • R0987 has two identical light chains, one of which has an amino acid sequence as shown in SEQ ID NO: 23:
  • the fusion protein molecule, R0674 (IL10-terminal positive control molecule, composed of an Fc region and IL10WT fused at its C-terminus, which includes two identical peptide chains, one of which is as follows: Hinge-CH2-CH3-linker-IL10WT, whose structure is shown in FIG4 , whose amino acid sequence is shown in SEQ ID NO: 24, and whose light chain amino acid sequence is shown in SEQ ID NO: 25), R1049 (whose structure is shown in FIG4 , anti-PD-1 monoclonal antibody control, whose heavy chain amino acid sequence is shown in SEQ ID NO: 26, and whose light chain amino acid sequence is shown in SEQ ID NO: 27), and R0862 (whose structure is shown in FIG4 , i.e., Isotype, negative control antibody; whose heavy chain amino acid sequence and light chain amino acid sequence are shown in SEQ ID NO: 28 and 29) were diluted to an initial concentration of 200 nM, a volume of 180 ⁇ L, 3-fold gradient
  • CHO-mPD1 cells (CHO cells expressing mouse PD-1) or CHO-hIL10R cells
  • the cells (CHO cells expressing human IL10R ⁇ ) were centrifuged at 350g/5min, the supernatant was discarded, the cell density was adjusted to 2E+06 with 3% BSA PBS buffer, and 100 ⁇ L/tube was evenly distributed into 96-well V-shaped plates; the above-diluted molecules were added to the cells, 100 ⁇ L/well, and incubated at 2-8 degrees for 0.5h; the 96-well plate was taken out, centrifuged at 350g for 5min, the supernatant was carefully removed, and 200 ⁇ L/well of 3% BSA PBS buffer was added, and centrifuged at 350g for 5min again, and the supernatant was carefully removed; PE fluorescent secondary antibody (1:500 dilution) was prepared with PBS buffer containing 3% BSA, and 100 ⁇ L/well was added to the corresponding 96-well plate, the cells were resuspended, and
  • the results of the IL-10 monomer fusion protein binding activity to IL-10R ⁇ are shown in Figure 6.
  • the IL-10 end binding activity of R1738 is decreased compared with R0989 and R1740; the IL-10 end binding activity of R1737 is decreased compared with R0987 and R1739.
  • the fusion proteins, R0674, R0579 (IL-10-positive antibody fusion protein control, in which the IL-10 is free of the first two amino acids of natural IL-10 and no spacer peptide is inserted, and its structure is shown in Figure 4. Its heavy chain amino acid sequence is shown in SEQ ID NO:30, and its light chain amino acid sequence is shown in SEQ ID NO:31), and R1187 (non-targeted IL10-positive control molecule, which is formed by fusion of non-PD1 targeting antibody and IL10M, including two identical heavy chains and two identical light chains, and the C-termini of the two light chains are fused with IL10M, and its structure is shown in Figure 4.
  • the above cells were digested with TE, centrifuged at 350g/4min after digestion, and the supernatant was removed. The cells were resuspended with 1% FBS-PBS and washed again. The supernatant was discarded, and the cells were finally resuspended with culture medium. After cell counting, the cell density was adjusted to 5E5/mL, and 50 ⁇ L was plated per well, and then placed in a 37°C incubator for adhesion treatment for 6 hours. The target cells R0326Fc-118 cells (stable expression of PD1, which plays an enrichment role in this system) were centrifuged at 350g/5min, and the supernatant was discarded.
  • the cell density was adjusted to 1E+06 with 3% BSA PBS buffer; the reaction system was prepared in a flat-bottom plate ( 1.
  • Enrichment system According to the experimental design, the diluted fusion protein was first mixed with the target cells R0326Fc-118 in an equal volume at a volume of 25 ⁇ L/well, and incubated for about 30min. Then, the target cells R0326 and Ab were carefully transferred into the adherent HEK293-hIL10 reporter gene cells; 100 ⁇ I Assay Buffer was added to the Medium only wells, and 25 ⁇ L Assay Buffer was added to the Cell only wells.
  • the final volume of all wells was 100 ⁇ L, The edge wells were sealed with 200 ⁇ L of sterile water, and the 96-well plate was continued to be cultured in the incubator for 16 hours; 2.
  • Non-enrichment system no target cells (R0326Fc-118) were added, that is, the corresponding antibody was directly added to the cells that had been treated for adhesion; other operations were the same as the enrichment system).
  • the Bright-LumiTM firefly luciferase detection reagent was thawed in advance and equilibrated to room temperature. After the cells were cultured to the time point, the cell culture plate was taken out and equilibrated to room temperature for 10 minutes (not more than 30 minutes).
  • the structure of the heavy chain of R1187 from N-terminus to C-terminus is VH-CH1-Hinge-CH2-CH3, and its amino acid sequence is as follows:
  • the structure of the light chain of R1187 from N-terminus to C-terminus is VL-CL-L5-IL10, and its amino acid sequence is as follows:
  • Antigen IL10R ⁇ (IL10R ⁇ -his) was diluted to 1 ⁇ g/mL (diluent: 50 mM CB), added to a 96-well ELISA plate at 100 ⁇ L/well, sealed with a sealing film, and left to stand overnight in a 4°C refrigerator; the next day, the plate was washed three times with 1 ⁇ PBST and patted dry, and assay buffer (1% BSA) was added at 200 ⁇ L/well, and blocked at room temperature for 1.5 h; the plate was washed once with 1 ⁇ PBST and patted dry, and the antibody to be tested (starting at 60 nM, 3-fold dilution at 11 concentration points) was added at 100 ⁇ L/well, and the plate was then washed ...
  • assay buffer 1% BSA
  • the antibody His-Tag Mouse mAb was diluted to 1 ⁇ g/mL (diluent: 50 mM CB), added to a 96-well ELISA plate at 100 ⁇ L/well, sealed with a sealing film, and left to stand overnight in a 4°C refrigerator; the next day, the plate was washed 3 times with 1 ⁇ PBST and patted dry, and assay buffer (1% BSA) was added at 200 ⁇ L/well, and blocked at room temperature for 1.5 h; the plate was washed once with 1 ⁇ PBST and patted dry, and antigen R2050 (IL10 ⁇ -his, 1 ⁇ g/mL) diluted in assay buffer was added at 100 ⁇ L/well, sealed with a sealing film, and incubated at room temperature with shaking (500 rpm) for 1 h; the plate was washed 5 times with 1 ⁇ PBST and patted dry, and assay buffer was added at 100 ⁇ L/well.
  • assay buffer 1% BSA
  • the antibody to be tested was diluted with the assay buffer (starting at 60 nM, 3-fold dilution to 11 concentration points), sealed with a sealing film, and incubated at room temperature with shaking (500 rpm) for 1.5 h; the plate was washed 5 times with 1 ⁇ PBST and patted dry, and 100 ⁇ L/well of the diluted antibody was added with the assay buffer GAH-IgG Fc HRP (1:10K), sealed with sealing film, incubated at room temperature for 40 minutes; washed the strips with 1 ⁇ PBST 6 times and patted dry, added TMB colorimetric solution at 100 ⁇ L/well, incubated at room temperature for 20-30 minutes; added stop solution at 100 ⁇ L/well, read the plate at 450nm&630nm, and analyzed the data with SoftMax Pro.
  • PD1 ELISA was used to detect the binding activity of each IL10 fusion protein with IL10R ⁇ /IL10R ⁇
  • Antigen R2051-E7 (IL10R ⁇ /IL10R ⁇ -hFc) was diluted to 1 ⁇ g/mL (diluent: 50 mM CB), added to a 96-well ELISA plate at 100 ⁇ L/well, sealed with a sealing film, and allowed to stand overnight in a 4°C refrigerator; the next day, the plate was washed three times with 1 ⁇ PBST and patted dry, and assay buffer (1% BSA) was added at 200 ⁇ L/well, and blocked at room temperature for 1.5 h; the plate was washed once with 1 ⁇ PBST and patted dry, and the antibody to be tested diluted in assay buffer (60 nM starting point, 3-fold dilution to 11 concentration points) was added at 100 ⁇ L/well, sealed with a sealing film, and incubated at room temperature with shaking (500 rpm) for 1.5 h; the plate was washed with 1 ⁇ PBS The plates were washed 5 times with 1 ⁇ PBST and patted dry, and

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Abstract

The present invention relates to the field of biotechnology. Provided are an IL-10 monomer fusion protein and the use thereof. The fusion protein of the present invention has targeting capability, has improved safety, and can be used for effectively treating or preventing various tumors or inflammatory diseases.

Description

一种IL-10单体融合蛋白An IL-10 monomer fusion protein
相关申请的交叉引用CROSS-REFERENCE TO RELATED APPLICATIONS
本公开要求于2022年12月21日提交中国专利局的申请号为“202211646452.8”名称为“一种IL-10单体融合蛋白”的中国专利申请的优先权,其全部内容通过引用结合在本公开中。The present disclosure claims priority to a Chinese patent application with application number “202211646452.8” and title “A IL-10 monomer fusion protein” filed with the Chinese Patent Office on December 21, 2022, the entire contents of which are incorporated by reference into the present disclosure.
技术领域Technical Field
本公开涉及生物医药技术领域,具体而言,涉及一种IL-10单体融合蛋白。The present disclosure relates to the field of biomedicine technology, and in particular to an IL-10 monomer fusion protein.
背景技术Background technique
白细胞介素10(Interleukin 10,IL-10,或IL10)也被称为人类细胞因子合成抑制因子(CSIF),是一种抗炎细胞因子,属于同源二聚体分泌物,目前临床上的IL-10蛋白存在安全性问题,少量的天然二聚化的IL-10分子与其受体IL-10Rα高亲和力结合后,进一步与IL-10Rβ结合,形成六聚体复合物并激活下游信号,引起生物学功能反应。Interleukin 10 (IL-10, or IL10), also known as human cytokine synthesis inhibitory factor (CSIF), is an anti-inflammatory cytokine and a homodimeric secretion. Currently, there are safety issues with IL-10 protein in clinical practice. A small amount of naturally dimerized IL-10 molecules bind with high affinity to its receptor IL-10Rα, and then further bind to IL-10Rβ to form a hexameric complex and activate downstream signals, causing biological functional responses.
目前的临床IL-10药物分子缺乏靶向性,药物分子容易脱靶,并产生副作用;并且这些融合蛋白分子往往都具有正常的IL-10二聚体结构,IL-10二聚体与IL-10Rα高亲和力结合,可能会影响抗体端的靶向作用,从而导致设计思路失败,并且如果抗体端的活性需求剂量较大,则IL-10端的副作用仍然是一个棘手的问题。Current clinical IL-10 drug molecules lack targeting, are easily off-target, and produce side effects; and these fusion protein molecules often have a normal IL-10 dimer structure. IL-10 dimers bind to IL-10Rα with high affinity, which may affect the targeting effect of the antibody end, thereby causing the design idea to fail. Moreover, if the activity of the antibody end requires a large dose, the side effects of the IL-10 end will still be a thorny problem.
将IL-10单体对称地或非对称地连接在抗体分子的不同部位,通过抗体自身结构的空间位阻可以使IL-10单体被隔离开,当IL-10单体融合蛋白处于游离状态时,即使IL-10单体与IL-10Rα结合也不能引起功能反应。只有当抗体端结合到靶细胞后,才能通过聚集效应,将邻近IL10单体-IL10Rα复合物聚拢,并进一步与IL-10Rβ结合形成复合物产生下游信号并引发生物功能。但IL-10单体连接在抗体分子不同部位的融合蛋白依旧有体内毒性这个问题存在The IL-10 monomers are symmetrically or asymmetrically connected to different parts of the antibody molecule. The steric hindrance of the antibody's own structure can isolate the IL-10 monomers. When the IL-10 monomer fusion protein is in a free state, even if the IL-10 monomer binds to IL-10Rα, it cannot cause a functional response. Only when the antibody end binds to the target cell can it aggregate the adjacent IL10 monomer-IL10Rα complex through the aggregation effect, and further bind to IL-10Rβ to form a complex to generate downstream signals and trigger biological functions. However, the fusion protein of IL-10 monomers connected to different parts of the antibody molecule still has the problem of in vivo toxicity.
因此,仍需积极探索靶向性强、副作用小的IL-10药物,该研究方向对预防或治疗肿瘤或炎性疾病具有重要意义。Therefore, it is still necessary to actively explore IL-10 drugs with strong targeting and few side effects. This research direction is of great significance for the prevention or treatment of tumors or inflammatory diseases.
发明内容Summary of the invention
本公开的目的在于提供一种IL-10单体融合蛋白。The purpose of the present disclosure is to provide an IL-10 monomer fusion protein.
在本公开的第一方面,本公开提供了一种融合蛋白,其包含:抗体,和插入在上述抗体中的白细胞介素单体或其变体;In a first aspect of the present disclosure, the present disclosure provides a fusion protein comprising: an antibody, and an interleukin monomer or a variant thereof inserted into the antibody;
在一些具体的实施方式中,上述抗体为免疫球蛋白,其具有两条相同的轻链和两条相同的重链,上述轻链包括VL区和CL区,上述重链包括VH区、CH1区、CH2区、和CH3区;上述白细胞介素单体或其变体插入至上述抗体的位置为如下(i)或(ii):In some specific embodiments, the antibody is an immunoglobulin having two identical light chains and two identical heavy chains, wherein the light chain comprises a VL region and a CL region, and the heavy chain comprises a VH region, a CH1 region, a CH2 region, and a CH3 region; and the position at which the interleukin monomer or a variant thereof is inserted into the antibody is as follows (i) or (ii):
(i)上述白细胞介素单体或其变体插入至上述抗体的其中一条重链的CH2区和CH3区之间;(i) the interleukin monomer or variant thereof is inserted between the CH2 region and the CH3 region of one of the heavy chains of the antibody;
(ii)上述白细胞介素单体或其变体插入至上述抗体的其中一条轻链的VL区和CL区之间。(ii) The interleukin monomer or variant thereof is inserted between the VL region and the CL region of one of the light chains of the antibody.
在本公开的第二方面,本公开提供了一种多特异性结合分子,其包括前述的融合蛋白。In a second aspect of the present disclosure, the present disclosure provides a multispecific binding molecule, which includes the aforementioned fusion protein.
在本公开的第三方面,本公开提供了一种核酸,其编码前述的融合蛋白或前述的多特异性结合分子。In the third aspect of the present disclosure, the present disclosure provides a nucleic acid encoding the aforementioned fusion protein or the aforementioned multi-specific binding molecule.
在本公开的第四方面,本公开提供了一种表达载体,其含前述的核酸。In a fourth aspect of the present disclosure, the present disclosure provides an expression vector comprising the aforementioned nucleic acid.
在本公开的第五方面,本公开提供了一种重组细胞,其携带前述的核酸、前述的表达载体、表达前述的融合蛋白或前述的多特异性结合分子。In a fifth aspect of the present disclosure, the present disclosure provides a recombinant cell, which carries the aforementioned nucleic acid, the aforementioned expression vector, and expresses the aforementioned fusion protein or the aforementioned multi-specific binding molecule.
在本公开的第六方面,本公开提供了前述的融合蛋白、或前述的多特异性结合分子、前述的核酸、前述的表达载体或前述的重组细胞在制备药物中的用途,上述药物用于治疗或预防肿瘤或炎性疾病。In the sixth aspect of the present disclosure, the present disclosure provides the use of the aforementioned fusion protein, or the aforementioned multi-specific binding molecule, the aforementioned nucleic acid, the aforementioned expression vector or the aforementioned recombinant cell in the preparation of a drug, wherein the aforementioned drug is used to treat or prevent tumors or inflammatory diseases.
在本公开的第七方面,本公开提供了一种药物组合物,其包含前述的融合蛋白、或前述的多特异性结合分子、前述的核酸、前述的表达载体或前述的重组细胞;可选地,上述药物组合物还包括药学上可接受的载体。In the seventh aspect of the present disclosure, the present disclosure provides a pharmaceutical composition, which comprises the aforementioned fusion protein, or the aforementioned multi-specific binding molecule, the aforementioned nucleic acid, the aforementioned expression vector or the aforementioned recombinant cell; optionally, the above-mentioned pharmaceutical composition also includes a pharmaceutically acceptable carrier.
在本公开的第八方面,本公开提供了一种治疗、预防或诊断肿瘤或炎性疾病、病症或状况的方法,其包括向受试者施用治疗有效量的前述药物组合物。In an eighth aspect of the present disclosure, the present disclosure provides a method for treating, preventing or diagnosing a tumor or inflammatory disease, disorder or condition, comprising administering a therapeutically effective amount of the aforementioned pharmaceutical composition to a subject.
附图说明BRIEF DESCRIPTION OF THE DRAWINGS
为了更清楚地说明本公开实施例的技术方案,下面将对实施例中所需要使用的附图作简单地介绍,应当理解,以下附图仅示出了本公开的某些实施例,因此不应被看作是对范围的限定,对于本领域普通技术人员来讲,在不付出创造性劳动的前提下,还可以根据这些附图获得其他相关的附图。In order to more clearly illustrate the technical solutions of the embodiments of the present disclosure, the drawings required for use in the embodiments will be briefly introduced below. It should be understood that the following drawings only show certain embodiments of the present disclosure and therefore should not be regarded as limiting the scope. For ordinary technicians in this field, other related drawings can be obtained based on these drawings without paying creative work.
图1是根据本公开实施例的天然IL-10分子及IL-10单体与IL-10受体结合方式的示意图,其中,A表示天然IL-10分子与IL-10受体结合方式的示意图,R1表示IL-10受体α(IL-10Rα),R2表示IL-10受体β(IL-10Rβ);B表示IL-10单体与IL-10受体结合方式的示意图,R1表示IL-10受体α(IL-10Rα),IL-10M1表示IL-10单体。Figure 1 is a schematic diagram of the binding mode of natural IL-10 molecules and IL-10 monomers to IL-10 receptors according to an embodiment of the present disclosure, wherein A represents a schematic diagram of the binding mode of natural IL-10 molecules to IL-10 receptors, R1 represents IL-10 receptor α (IL-10Rα), and R2 represents IL-10 receptor β (IL-10Rβ); B represents a schematic diagram of the binding mode of IL-10 monomers to IL-10 receptors, R1 represents IL-10 receptor α (IL-10Rα), and IL-10M1 represents IL-10 monomers.
图2是根据本公开实施例的融合蛋白中抗体与靶细胞上的抗原结合、IL-10单体与IL-10受体结合的示意图,IL-10单体亲和力较弱,靶向作用差,当抗体端靶向肿瘤表面后,抗体的局部富集可以将IL-10单体聚集在一起,变成二聚体IL-10(M)*2发挥作用,其中,IL-10R1表示IL-10受体α(IL-10Rα),IL-10R2表 示IL-10受体β(IL-10Rβ),Her2表示人类表皮生长因子受体,是抗体靶向抗原的举例,T-cell表示T细胞,Tumor表示肿瘤。FIG2 is a schematic diagram of the binding of antibodies to antigens on target cells and IL-10 monomers to IL-10 receptors in the fusion protein according to an embodiment of the present disclosure. The affinity of IL-10 monomers is relatively weak and the targeting effect is poor. When the antibody end is targeted to the tumor surface, the local enrichment of the antibody can aggregate the IL-10 monomers together to form a dimer IL-10(M)*2 to exert its effect. Among them, IL-10R1 represents IL-10 receptor α (IL-10Rα), and IL-10R2 represents represents IL-10 receptor β (IL-10Rβ), Her2 represents human epidermal growth factor receptor, which is an example of an antibody-targeted antigen, T-cell represents T cell, and Tumor represents tumor.
图3是根据本公开实施例,IL-10单体插入抗体分子中的位置结构示意图(以IL-10单体插入抗体的其中一条重链的CH2区与CH3区之间为例),其中,A表示在抗体含有Knob结构域的重链的CH2区与CH3区之间插入一条IL-10单体的结构示意图,得到的融合蛋白分子命名为R1738;B表在抗体含有Knob结构域的重链的CH3区的C末端插入一条IL-10单体的结构示意图,得到的融合蛋白分子命名为R1740;C表示在抗体含有Obscurin结构域的轻链的VL区的C末端插入一条IL-10单体的结构示意图,得到的融合蛋白分子命名为R1737;D表示在抗体含有Obscurin结构域的轻链的CL区的C末端插入一条IL-10单体的结构示意图,得到的融合蛋白分子命名为R1739;其中,图中的IL-10表示IL-10单体,KIH表示KIH重链防错配结构,Obs结构域表示Obscurin结构域,Tit表示Titin结构域,VL表示轻链可变区,VH表示重链可变区。FIG3 is a schematic diagram of the positional structure of the IL-10 monomer inserted into the antibody molecule according to an embodiment of the present disclosure (taking the insertion of the IL-10 monomer between the CH2 region and the CH3 region of one of the heavy chains of the antibody as an example), wherein A represents a schematic diagram of the structure of inserting an IL-10 monomer between the CH2 region and the CH3 region of the heavy chain containing the Knob domain of the antibody, and the resulting fusion protein molecule is named R1738; B represents a schematic diagram of the structure of inserting an IL-10 monomer at the C-terminus of the CH3 region of the heavy chain containing the Knob domain of the antibody, and the resulting fusion protein molecule is named R1740; C represents a schematic diagram of the structure of inserting an IL-10 monomer at the C-terminus of the CH3 region of the heavy chain containing the Knob domain of the antibody, and the resulting fusion protein molecule is named R1740; A schematic diagram of the structure in which an IL-10 monomer is inserted into the C-terminus of the VL region of the light chain containing the Obscurin domain, and the resulting fusion protein molecule is named R1737; D represents a schematic diagram of the structure in which an IL-10 monomer is inserted into the C-terminus of the CL region of the light chain containing the Obscurin domain of the antibody, and the resulting fusion protein molecule is named R1739; wherein, IL-10 in the figure represents an IL-10 monomer, KIH represents a KIH heavy chain anti-mismatch structure, Obs domain represents Obscurin domain, Tit represents Titin domain, VL represents a light chain variable region, and VH represents a heavy chain variable region.
图4是本公开实施例中的对照分子(R0987、R0989、R0674、R0862、R1049、R0579、R1187)的结构示意图,其中,图中的IL-10表示IL-10单体,VL表示轻链可变区,VH表示重链可变区。Figure 4 is a schematic diagram of the structure of the control molecules (R0987, R0989, R0674, R0862, R1049, R0579, R1187) in the embodiments of the present disclosure, wherein IL-10 in the figure represents an IL-10 monomer, VL represents a light chain variable region, and VH represents a heavy chain variable region.
图5是根据本公开实施例的融合蛋白R1737、R1738、R1739、R1740的SDS-PAGE检测结果图,其中,R是指还原型SDS-PAGE(reducing SDS-PAGE),NR是指非还原型SDS-PAGE(No-reducing SDS-PAGE)。Figure 5 is a graph showing the SDS-PAGE detection results of the fusion proteins R1737, R1738, R1739, and R1740 according to the embodiments of the present disclosure, wherein R refers to reducing SDS-PAGE (reducing SDS-PAGE) and NR refers to non-reducing SDS-PAGE (No-reducing SDS-PAGE).
图6是根据本公开实施例的融合蛋白采用流式法检测IL-10单体端对IL10Rα的结合活性的结果图,其中,横坐标(Ab conc.Log(nM))表示抗体浓度(nM),纵坐标MFI PE表示平均荧光强度。Figure 6 is a graph showing the result of detecting the binding activity of the IL-10 monomer end to IL10Rα by flow cytometry according to the fusion protein of an embodiment of the present disclosure, wherein the abscissa (Ab conc.Log(nM)) represents the antibody concentration (nM), and the ordinate MFI PE represents the mean fluorescence intensity.
图7是根据本公开实施例的融合蛋白采用流式法检测抗体端对mPD-1的结合活性的结果图,其中,横坐标(Ab conc.Log(nM))表示抗体浓度(nM),纵坐标MFI PE表示平均荧光强度。Figure 7 is a graph showing the result of detecting the binding activity of the antibody end to mPD-1 by flow cytometry according to the fusion protein of the embodiment of the present disclosure, wherein the horizontal axis (Ab conc.Log(nM)) represents the antibody concentration (nM), and the vertical axis MFI PE represents the mean fluorescence intensity.
图8是根据本公开实施例的融合蛋白采用报告基因法检测IL-10单体端结合活性的结果图,其中,B是A中R1737、R1738、R1739和R0862的放大图,横坐标(Ab conc.Log(μg/mL))表示抗体浓度(μg/mL),纵坐标(Lum)表示Luminescence荧光强度;实心图表示富集前的信号,空心图表示富集体系的信号。Figure 8 is a graph showing the result of detecting the IL-10 monomer end binding activity using the reporter gene method for the fusion protein according to an embodiment of the present disclosure, wherein B is an enlarged view of R1737, R1738, R1739 and R0862 in A, the abscissa (Ab conc.Log (μg/mL)) represents the antibody concentration (μg/mL), and the ordinate (Lum) represents the luminescence fluorescence intensity; the solid graph represents the signal before enrichment, and the hollow graph represents the signal of the enrichment system.
图9为通过ELISA法检测各IL10融合蛋白与IL10Rα结合的活性检测结果。FIG. 9 shows the results of the activity test of each IL10 fusion protein binding to IL10Rα by ELISA.
图10为通过ELISA法检测各IL10融合蛋白与IL10Rβ结合的活性检测结果。FIG. 10 is the result of detecting the activity of each IL10 fusion protein binding to IL10Rβ by ELISA.
图11为通过ELISA法检测各IL10融合蛋白与IL10Rα/IL10Rβ结合的活性检测结果。FIG. 11 shows the results of the activity test of each IL10 fusion protein binding to IL10Rα/IL10Rβ by ELISA.
发明详述DETAILED DESCRIPTION OF THE INVENTION
为了更容易理解本公开,以下具体定义了某些技术和科学在本公开中,术语。除非本公开明确定义,否则本文使用的所有其它技术和科学术语都具有本公开所属领域的一般技术人员通常理解的含义。除非另有说明,本公开中使用自商业途径获得的试剂盒及试剂的方法通常根据厂商定义的方案和/或参数进行。In order to make the present disclosure more easily understood, certain technical and scientific terms are specifically defined below. Unless otherwise defined in the present disclosure, all other technical and scientific terms used herein have the meanings commonly understood by those of ordinary skill in the art to which the present disclosure belongs. Unless otherwise indicated, the methods disclosed herein using kits and reagents obtained from commercial sources are generally performed according to the protocols and/or parameters defined by the manufacturer.
本公开中的冠词“一种”(a/an)、“一个”(a/an)和“所述”包括复数指代,除非上下文清楚表明其并非如此。举例来说,“一种抗体”指一种抗体或多于一种抗体。The articles "a", "an", and "the" in this disclosure include plural references unless the context clearly indicates otherwise. For example, "an antibody" refers to one antibody or more than one antibody.
在本公开中,术语“第一”、“第二”仅用于描述目的,而不能理解为指示或暗示相对重要性或者隐含指明所指示的技术特征的数量。由此,限定有“第一”、“第二”的特征可以明示或者隐含地包括至少一个该特征。在本公开的描述中,“多个”的含义是至少两个,例如两个,三个等,除非另有明确具体的限定。In the present disclosure, the terms "first" and "second" are used for descriptive purposes only and should not be understood as indicating or implying relative importance or implicitly indicating the number of the indicated technical features. Thus, a feature defined as "first" or "second" may explicitly or implicitly include at least one of the features. In the description of the present disclosure, "plurality" means at least two, such as two, three, etc., unless otherwise clearly and specifically defined.
在本公开的第一方面,本公开提供了一种融合蛋白,其包含:抗体,和插入在上述抗体中的白细胞介素单体或其变体;In a first aspect of the present disclosure, the present disclosure provides a fusion protein comprising: an antibody, and an interleukin monomer or a variant thereof inserted into the antibody;
在一些具体的实施方式中,上述抗体为免疫球蛋白,其具有两条相同的轻链和两条相同的重链,上述轻链包括VL区和CL区,上述重链包括VH区、CH1区、CH2区、和CH3区;上述白细胞介素单体或其变体插入至上述抗体的位置为如下(i)或(ii):In some specific embodiments, the antibody is an immunoglobulin having two identical light chains and two identical heavy chains, wherein the light chain comprises a VL region and a CL region, and the heavy chain comprises a VH region, a CH1 region, a CH2 region, and a CH3 region; and the position at which the interleukin monomer or a variant thereof is inserted into the antibody is as follows (i) or (ii):
(i)上述白细胞介素单体或其变体插入至上述抗体的其中一条重链的CH2区和CH3区之间;(i) the interleukin monomer or variant thereof is inserted between the CH2 region and the CH3 region of one of the heavy chains of the antibody;
(ii)上述白细胞介素单体或其变体插入至上述抗体的其中一条轻链的VL区和CL区之间。(ii) The interleukin monomer or variant thereof is inserted between the VL region and the CL region of one of the light chains of the antibody.
在本公开中,术语“融合蛋白”是指包含两个或更多不同蛋白的融合多肽分子,其中融合蛋白的各组分通过肽键直接相连或通过连接肽相互连接。In the present disclosure, the term "fusion protein" refers to a fusion polypeptide molecule comprising two or more different proteins, wherein the components of the fusion protein are directly linked by peptide bonds or linked to each other by a connecting peptide.
在本公开中,术语“多肽”和“蛋白质”在本文中可互换使用,指氨基酸残基的聚合物。该术语适用于氨基酸聚合物,其中一个或多个氨基酸残基是相应天然存在的氨基酸的人工化学模拟物,以及适用于天然存在的氨基酸聚合物和非天然存在的氨基酸聚合物。In the present disclosure, the terms "polypeptide" and "protein" are used interchangeably herein to refer to a polymer of amino acid residues. The term applies to amino acid polymers in which one or more amino acid residues is an artificial chemical mimetic of the corresponding naturally occurring amino acid, as well as to naturally occurring amino acid polymers and non-naturally occurring amino acid polymers.
在本公开中,术语“氨基酸(amino acid)”是指天然存在的氨基酸和合成的氨基酸,以及与天然存在的氨基酸类似的方式起作用的氨基酸类似物和氨基酸模拟物。天然存在的氨基酸包括丙氨酸(Ala;A)、精氨酸(Arg;R)、天冬酰胺(Asn;N)、天冬氨酸(Asp;D)、半胱氨酸(Cys;C);谷氨酸(Glu;E)、谷氨酰胺(Gln;Q)、甘氨酸(Gly;G);组氨酸(His;H)、异亮氨酸(Ile;I)、亮氨酸(Leu;L)、赖氨酸(Lys;K)、甲硫氨酸(Met;M)、苯丙氨酸(Phe;F)、脯氨酸(Pro;P)、丝胺酸(Ser;S)、苏氨酸(Thr;T)、色氨酸(Trp;W)、酪氨酸(Tyr;Y)和缬氨酸(Val;V)。氨基酸类似物是指与天然存在的氨基酸具有相同基本化学结构(即与氢、羧基、氨基和R基团结合的α碳)的化合物,例如高丝氨酸、正亮氨酸、甲硫氨酸亚砜、甲硫氨酸甲基锍。氨基酸类似物通常具有修饰的R基团(例如,正亮氨酸)或修饰的肽骨架,但保留与天然存在的氨基酸相同的基本化学结构。氨基酸模拟物是指具有与氨基酸的一般化学结构不同的结构,但具有与天然存在的氨基酸类似的方式起作用的化学化合物。In the present disclosure, the term "amino acid" refers to naturally occurring amino acids and synthetic amino acids, as well as amino acid analogs and amino acid mimetics that function in a manner similar to the naturally occurring amino acids. Naturally occurring amino acids include alanine (Ala; A), arginine (Arg; R), asparagine (Asn; N), aspartic acid (Asp; D), cysteine (Cys; C); glutamic acid (Glu; E), glutamine (Gln; Q), glycine (Gly; G); histidine (His; H), isoleucine (Ile; I), leucine (Leu; L), lysine (Lys; K), methionine (Met; M), phenylalanine (Phe; F), proline (Pro; P), serine (Ser; S), threonine (Thr; T), tryptophan (Trp; W), tyrosine (Tyr; Y), and valine (Val; V). Amino acid analogs refer to compounds that have the same basic chemical structure as naturally occurring amino acids (i.e., an alpha carbon bound to a hydrogen, carboxyl group, amino group, and R group), such as homoserine, norleucine, methionine sulfoxide, and methionine methylsulfonium. Amino acid analogs typically have modified R groups (e.g., norleucine) or modified peptide backbones, but retain the same basic chemical structure as naturally occurring amino acids. Amino acid mimetics refer to chemical compounds that have a structure that is different from the general chemical structure of an amino acid, but function in a manner similar to that of a naturally occurring amino acid.
在本公开中,术语“连接肽”是指由氨基酸组成的肽段,例如单独或组合使用的甘氨酸和/或丝氨酸残基,以连接抗体中的各个结构域。在某些实施方案中,所述连接肽可以为约1至约100个氨基酸长,例如,约 1至50个氨基酸长。在本公开中,“第一连接肽”、“第二连接肽”、“第三连接肽”、“第四连接肽”、“第五连接肽”表示不同的连接肽。In the present disclosure, the term "connector peptide" refers to a peptide segment composed of amino acids, such as glycine and/or serine residues, used alone or in combination to connect the various domains in an antibody. In certain embodiments, the connecting peptide can be about 1 to about 100 amino acids long, for example, about 1 to 50 amino acids long. In the present disclosure, "first connecting peptide", "second connecting peptide", "third connecting peptide", "fourth connecting peptide", "fifth connecting peptide" represent different connecting peptides.
在一些具体的实施方式中,上述连接肽为柔性连接肽。In some specific embodiments, the above-mentioned connecting peptide is a flexible connecting peptide.
在一些具体的方式中,上述柔性连接肽氨基酸序列包括但不限于(GS)n、(GGGGS)nG或(GGGGSSG)n,其中n是等于或大于1的正整数,例如,n是1-10中的正整数。In some specific embodiments, the above-mentioned flexible connecting peptide amino acid sequence includes but is not limited to (GS)n, (GGGGS)nG or (GGGGSSG)n, wherein n is a positive integer equal to or greater than 1, for example, n is a positive integer between 1-10.
在一些具体的方式中,柔性连接肽的氨基酸序列可以是GSGSGSGS(SEQ ID NO:6)、GGGGSG(SEQ ID NO:12)、GSGSGSGSGGGGSSG(SEQ ID NO:13)、GGGGSSG(SEQ ID NO:16)、或GGGGSGGGGSGGGGSGGGGSG(SEQ ID NO:17)。In some specific embodiments, the amino acid sequence of the flexible connecting peptide can be GSGSGSGS (SEQ ID NO:6), GGGGSG (SEQ ID NO:12), GSGSGSGSGGGGSSG (SEQ ID NO:13), GGGGSSG (SEQ ID NO:16), or GGGGSGGGGSGGGGSGGGGSG (SEQ ID NO:17).
在本公开中,术语“间隔肽”是指插入特定蛋白质并用于改变蛋白质的结构和/或功能的肽。从这个意义上说,它与连接其他融合伙伴的连接肽不同,但连接肽可以用作间隔肽。In the present disclosure, the term "spacer peptide" refers to a peptide that is inserted into a specific protein and used to change the structure and/or function of the protein. In this sense, it is different from the connecting peptide that connects other fusion partners, but the connecting peptide can be used as a spacer peptide.
在一些具体的方式中,间隔肽具有如SEQ ID NO:4所示的氨基酸序列。In some specific embodiments, the spacer peptide has an amino acid sequence as shown in SEQ ID NO:4.
在本公开中,术语“抗体”是能够与抗原特异性结合的免疫球蛋白分子,包括两条分子量较轻的轻链和两条分子量较重的重链,重链(H链)和轻链(L链)由二硫键连接形成一个四肽链分子。其中,肽链的氨基端(N端)氨基酸序列变化很大,称为可变区(V区),羧基端(C端)相对稳定,变化很小,称为恒定区(C区)。L链和H链的V区分别称为VL和VH,L链的C区为CL,H链的C区包含CH1区、CH2区和CH3区,CH1区与CH2区一般之间通过铰链区(hinge)连接。In the present disclosure, the term "antibody" is an immunoglobulin molecule that can specifically bind to an antigen, including two light chains with a relatively light molecular weight and two heavy chains with a relatively heavy molecular weight, and the heavy chain (H chain) and the light chain (L chain) are connected by a disulfide bond to form a tetrapeptide chain molecule. Among them, the amino acid sequence of the amino terminal (N terminal) of the peptide chain varies greatly, which is called the variable region (V region), and the carboxyl terminal (C terminal) is relatively stable and varies little, which is called the constant region (C region). The V regions of the L chain and the H chain are respectively called VL and VH, the C region of the L chain is CL, and the C region of the H chain includes the CH1 region, the CH2 region and the CH3 region, and the CH1 region and the CH2 region are generally connected by a hinge region.
在本公开中,术语“铰链区(hinge)”是指免疫球蛋白重链CH1区和CH2区之间的区域,该区包括H链间二硫键,富含脯氨酸,不形成α螺旋,易发生伸展及一定程度扭曲,有利于抗体的抗原结合部位与抗原表位间的互补性结合。In the present disclosure, the term "hinge" refers to the region between the CH1 region and the CH2 region of an immunoglobulin heavy chain, which includes inter-H chain disulfide bonds, is rich in proline, does not form an α-helix, is prone to stretching and a certain degree of distortion, and is conducive to the complementary binding between the antigen binding site of the antibody and the antigen epitope.
在本公开中,术语“白细胞介素(IL)”是指具有复杂免疫调节功能的一组细胞因子,此外它们还参与机体的多种生理及病理反应,比如在炎症反应中起重要作用。目前至少发现了38个白细胞介素,分别命名为IL-1~IL-38。In the present disclosure, the term "interleukin (IL)" refers to a group of cytokines with complex immunomodulatory functions. In addition, they are also involved in a variety of physiological and pathological reactions of the body, such as playing an important role in inflammatory reactions. At least 38 interleukins have been discovered, named IL-1 to IL-38.
在本公开中,术语“单体”是指聚集体的其中一条单链多肽。例如,对于白细胞介素单体,是指某些通常以二聚体形式存在的白细胞介素的两条肽链中的其中一条肽链。In the present disclosure, the term "monomer" refers to one of the single polypeptide chains of an aggregate. For example, for an interleukin monomer, it refers to one of the two peptide chains of certain interleukins that usually exist in the form of dimers.
在本公开中,术语“二聚体”表示以成双的型态出现的一类物质。天然状态下的呈二聚体结构的白细胞介素包括但不限于IL-10(康名超,卢迎春,等.白细胞介素-10多肽缀合物其二聚体及其用途)、IL-5(Clutterbuck EJ,Hirst EM,Sanderson CJ.Human interleukin-5(IL-5)regulates the production of eosinophils in human bone marrow cultures:comparison and interaction with IL-1,IL-3,IL-6,and GMCSF.Blood.1989 May 1;73(6):1504-12.PMID:2653458.)、IL-12(宋舸,袁玫,卢世璧.白细胞介素-12临床应用研究进展[J].中华肿瘤防治杂志,2007,14(001):75-79.)、IL-23(谭广,王忠裕.白细胞介素-23的研究进展[J].国际检验医学杂志,2006,27(10):3.)、IL-25(孟洁,厉小梅,徐蓓.白细胞介素-25在免疫炎症性疾病中的研究进展[J].中华风湿病学杂志,2012,16(11):3.)、IL-27(李阳夏丽坤.白细胞介素-27的生物学功能及其抗病毒作用的研究进展[J].国际免疫学杂志,2015,38(2):5.)和IL-35(张俊凤,田志康,薛庆节,等.IL-35在肿瘤中的作用机制研究进展[J].中国免疫学杂志,2020,36(7):5.)。In the present disclosure, the term "dimer" refers to a class of substances that appear in a pair. Interleukins with a dimer structure in the natural state include but are not limited to IL-10 (Kang Mingchao, Lu Yingchun, et al. Interleukin-10 polypeptide conjugates, dimers and uses thereof), IL-5 (Clutterbuck EJ, Hirst EM, Sanderson CJ. Human interleukin-5 (IL-5) regulates the production of eosinophils in human bone marrow cultures: comparison and interaction with IL-1, IL-3, IL-6, and GMCSF. Blood. 1989 May 1; 73(6):1504-12. PMID:2653458.), IL-12 (Song et al., 2003). Ge, Yuan Mei, Lu Shibi. Research progress on clinical application of interleukin-12[J]. Chinese Journal of Oncology Prevention and Treatment, 2007, 14(001):75-79.), IL-23(Tan Guang, Wang Zhongyu. Research progress on interleukin-23[J]. International Journal of Laboratory Medicine, 2006, 27(10):3.), IL-25(Meng Jie, Li Xiaomei, Xu Bei. Research progress on interleukin-25 in immune inflammatory diseases[J] . Chinese Journal of Rheumatology, 2012, 16(11):3.), IL-27 (Li Yang, Xia Likun. Research progress on the biological functions of interleukin-27 and its antiviral effects [J]. International Journal of Immunology, 2015, 38(2):5.) and IL-35 (Zhang Junfeng, Tian Zhikang, Xue Qingjie, et al. Research progress on the mechanism of action of IL-35 in tumors [J]. Chinese Journal of Immunology, 2020, 36(7):5.).
天然IL-5单体具有如下所示的氨基酸序列:
The native IL-5 monomer has the amino acid sequence shown below:
在本公开中,术语“IL-10”和“IL10”可互换使用,天然状态下的IL-10分子通常以二聚体结构存在(包括两条天然IL-10单体,单个天然IL-10单体具有如SEQ ID NO:3所示的氨基酸序列),天然IL-10分子与IL-10受体(IL-10R)结合方式如图1-A所示。目前临床IL-10药物缺乏靶向性,药物分子容易脱靶,不仅药效不易发挥且容易产生副作用。IL-10单体对IL-10Rα的活性比天然IL-10二聚体弱10倍(具体实验数据参考文献:J Biol Chem.2000 May 5;275(18):13552-7.doi:10.1074/jbc.275.18.13552.),且几乎无法介导与IL-10Rβ的进一步结合,因此很难激活下游信号引起生物学功能反应,IL-10单体与IL-10受体结合方式如图1-B所示。在本公开的一些具体的实施例中,将一条IL-10单体插入至抗体的其中一条轻链或重链的特定位置,形成“非对称结构”,制备得到非对称IL-10单体融合蛋白。根据本公开设计的IL-10单体融合蛋白,在无靶细胞聚集情况下,IL-10单体与IL-10Rα只有非常微弱的结合,甚至没有IL-10下游信号。只有抗体端结合到靶细胞后,才能通过聚集效应,将邻近的IL-10单体-IL-10Rα复合物聚拢,并进一步与IL-10Rβ结合形成复合物产生下游信号并引发生物功能(以IL-10单体插入抗体的其中一条重链的CH2区与CH3区之间为例,其作用机理如图2所示)。相较于IL-10单体融合蛋白,非对称IL-10单体融合蛋白只有一个IL-10单体,所以非对称IL-10单体融合蛋白就没有了类似正常IL-10分子或其抗体融合蛋白的给药剂量限制。非对称IL-10单体融合蛋白可以具有更大的给药剂量,这样也能为融合的抗体端(不同抗体的临床剂量有差异,如果IL-10的剂量限制太低,会严重限制非对称IL-10单体融合蛋白的抗体靶标选择)发挥功能提供更广泛的空间。In the present disclosure, the terms "IL-10" and "IL10" are used interchangeably. The IL-10 molecule in the natural state usually exists in a dimer structure (including two natural IL-10 monomers, and a single natural IL-10 monomer has an amino acid sequence as shown in SEQ ID NO: 3). The binding mode of the natural IL-10 molecule to the IL-10 receptor (IL-10R) is shown in Figure 1-A. At present, clinical IL-10 drugs lack targeting, and drug molecules are easily off-target, which not only makes it difficult to exert the efficacy but also easily produces side effects. The activity of IL-10 monomer on IL-10Rα is 10 times weaker than that of natural IL-10 dimer (reference for specific experimental data: J Biol Chem. 2000 May 5; 275(18):13552-7.doi:10.1074/jbc.275.18.13552.), and it is almost impossible to mediate further binding with IL-10Rβ, so it is difficult to activate downstream signals to cause biological functional responses. The binding mode of IL-10 monomer to IL-10 receptor is shown in Figure 1-B. In some specific embodiments of the present disclosure, an IL-10 monomer is inserted into a specific position of one of the light chains or heavy chains of an antibody to form an "asymmetric structure" to prepare an asymmetric IL-10 monomer fusion protein. According to the IL-10 monomer fusion protein designed in the present disclosure, in the absence of target cell aggregation, the IL-10 monomer has only very weak binding with IL-10Rα, and there is even no IL-10 downstream signal. Only after the antibody end binds to the target cell can it aggregate the adjacent IL-10 monomer-IL-10Rα complex through the aggregation effect, and further bind to IL-10Rβ to form a complex to generate downstream signals and trigger biological functions (taking the insertion of IL-10 monomer between the CH2 region and CH3 region of one of the heavy chains of the antibody as an example, its mechanism of action is shown in Figure 2). Compared with the IL-10 monomer fusion protein, the asymmetric IL-10 monomer fusion protein has only one IL-10 monomer, so the asymmetric IL-10 monomer fusion protein does not have the same dosage limit as the normal IL-10 molecule or its antibody fusion protein. The asymmetric IL-10 monomer fusion protein can have a larger dosage, which can also provide a wider space for the fused antibody end (the clinical doses of different antibodies vary. If the dose limit of IL-10 is too low, it will seriously limit the antibody target selection of the asymmetric IL-10 monomer fusion protein) to function.
在一些具体的实施方式中,IL-5、IL-12、IL-23、IL-25、IL-27和IL-35等也可以应用于本公开的融合蛋白,取得与IL-10类似的效果。即,将一条白细胞介素单体插入到抗体的其中一条重链或轻链的特定位置,在抗体结合到靶细胞前,这些白细胞介素单体不能激活下游的信号;抗体结合到靶细胞后,白细胞介素单体通过聚集形成二聚体与对应的受体结合,进而发挥生物学功能。In some specific embodiments, IL-5, IL-12, IL-23, IL-25, IL-27 and IL-35 can also be applied to the fusion protein of the present disclosure to achieve similar effects as IL-10. That is, an interleukin monomer is inserted into a specific position of one of the heavy chains or light chains of the antibody, and before the antibody binds to the target cell, these interleukin monomers cannot activate downstream signals; after the antibody binds to the target cell, the interleukin monomers aggregate to form dimers and bind to the corresponding receptors, thereby exerting biological functions.
在本公开中,术语“变体”,涵盖天然存在的变体和非天然存在的变体,通常是指具有天然多肽序列和结构的一种或多种化合物,相对于天然分子其具有一个或多个氨基酸添加、取代(本质上是保守的)和/或缺 失。白细胞介素“变体”与“修饰后的”白细胞介素可互换使用,是指相对于天然白细胞介素分子其具有一个或多个氨基酸添加、取代(本质上是保守的)和/或缺失或者与天然白细胞介素的氨基酸序列具有至少95%(例如95%、96%、97%、98%或99%)序列同一性的该白细胞介素氨基酸序列的等同术语。In the present disclosure, the term "variant" encompasses both naturally occurring variants and non-naturally occurring variants, and generally refers to one or more compounds having a native polypeptide sequence and structure, which have one or more amino acid additions, substitutions (conservative in nature) and/or deletions relative to the native molecule. Interleukin "variant" and "modified" interleukin are used interchangeably and refer to an equivalent term for an interleukin amino acid sequence that has one or more amino acid additions, substitutions (conservative in nature) and/or deletions relative to a native interleukin molecule or has at least 95% (e.g., 95%, 96%, 97%, 98% or 99%) sequence identity with the amino acid sequence of a native interleukin.
在本公开中,术语序列“同一性”指,当对两条序列进行最佳比对时(必要时引入间隙,以获取最大序列同一性百分比,且不将任何保守性取代视为序列同一性的一部分),两条序列的氨基酸/核酸在等价位置相同的程度(百分比)。为测定序列同一性百分比,比对可以通过本领域技术已知的技术来实现,例如使用公开可得到的计算机软件,诸如BLAST、BLAST-2、ALIGN、ALIGN-2或Megalign(DNASTAR)软件。本领域技术人员可确定适用于测量比对的参数,包括在所比较的序列全长上达成最大比对所需的任何算法。In the present disclosure, the term sequence "identity" refers to the degree (percentage) to which the amino acids/nucleic acids of the two sequences are identical at equivalent positions when the two sequences are optimally aligned (introducing gaps, if necessary, to obtain the maximum sequence identity percentage, and not considering any conservative substitutions as part of the sequence identity). To determine the percentage of sequence identity, the alignment can be achieved by techniques known in the art, for example, using publicly available computer software such as BLAST, BLAST-2, ALIGN, ALIGN-2 or Megalign (DNASTAR) software. Those skilled in the art can determine the parameters suitable for measuring the alignment, including any algorithm required to achieve maximum alignment over the full length of the compared sequences.
在本公开中,术语“IL-10变体”是指与野生型IL-10的氨基酸序列(SEQ ID NO:3)具有至少95%(例如95%、96%、97%、98%或99%)序列同一性的IL-10氨基酸序列。In the present disclosure, the term "IL-10 variant" refers to an IL-10 amino acid sequence that has at least 95% (e.g., 95%, 96%, 97%, 98% or 99%) sequence identity with the amino acid sequence of wild-type IL-10 (SEQ ID NO: 3).
在一些具体的实施方式中,上述白细胞介素单体或其变体插入至上述抗体的位置为(i);该抗体的重链包含防止重链错配的修饰。In some specific embodiments, the interleukin monomer or variant thereof is inserted into the antibody at position (i); the heavy chain of the antibody comprises a modification that prevents heavy chain mispairing.
由于发明中的抗体的四条多肽链包括两条结构不同的重链和轻链,将一条白细胞介素单体或其变体插入重链或轻链后,在采用基因工程技术制备本公开的融合蛋白时,四条多肽链在组装的过程中可随机产生多种可能的结构组合,但仅有一种为目标产物(即正确配对的产物),其余的产物均为错配产生的无效产物甚至副产物(即非正确配对的产物)。因此为了提高抗体的正确组装,减少抗体链间的错配,以防止错配和形成无活性的分子,当白细胞介素单体或其变体插入至上述抗体的其中一条重链上时,可在抗体的两条中重链引入防止重链错配的修饰即防止两条相同的重链配对的修饰。Since the four polypeptide chains of the antibody in the invention include two heavy chains and light chains with different structures, after inserting an interleukin monomer or a variant thereof into the heavy chain or light chain, when the fusion protein disclosed in the present invention is prepared by genetic engineering technology, the four polypeptide chains can randomly generate a variety of possible structural combinations during the assembly process, but only one is the target product (i.e., the correctly paired product), and the remaining products are invalid products or even by-products (i.e., incorrectly paired products) generated by mismatching. Therefore, in order to improve the correct assembly of antibodies, reduce mismatching between antibody chains, and prevent mismatching and the formation of inactive molecules, when the interleukin monomer or a variant thereof is inserted into one of the heavy chains of the above-mentioned antibody, a modification that prevents mismatching of the heavy chains, i.e., a modification that prevents pairing of two identical heavy chains, can be introduced into the two heavy chains of the antibody.
在本公开中,术语“防止重链错配的修饰”是指本领域内技术人员用来防止重链错配的一些设计或者修饰,包括但不限于KIH(Knob-In-Hole)、SEEDbodies(trand-exchange engineered domain)、cFAE(arm exchange)、XmAb、亮氨酸拉链技术(LUZ-Y)等。其中,KIH技术是指在抗体的其中一条重链的CH3区发生突变,形成一个突起的类似“杵”的结构(Knob),在另外一条重链的CH3区发生突变,形成一个凹陷的类似“臼”的结构(Hole),杵臼设计有利于抗体重链的正确装配,含Knob的重链与含Hole的重链配对,含Knob的两条重链彼此之间不配对,含Hole的两条重链彼此之间不配对。In the present disclosure, the term "modification to prevent mispairing of heavy chains" refers to some designs or modifications used by those skilled in the art to prevent mispairing of heavy chains, including but not limited to KIH (Knob-In-Hole), SEEDbodies (trand-exchange engineered domain), cFAE (arm exchange), XmAb, leucine zipper technology (LUZ-Y), etc. Among them, KIH technology refers to a mutation in the CH3 region of one of the heavy chains of an antibody to form a protruding "knob"-like structure (Knob), and a mutation in the CH3 region of another heavy chain to form a concave "hole"-like structure (Hole). The knob-hole design is conducive to the correct assembly of the antibody heavy chain. The heavy chain containing the Knob is paired with the heavy chain containing the Hole, the two heavy chains containing the Knob are not paired with each other, and the two heavy chains containing the Hole are not paired with each other.
在一些具体的实施方式中,上述抗体的一条重链的CH3区含有Knob结构域,该抗体的另一条重链的CH3区含有Hole结构域,上述Knob结构域与上述Hole结构域配对形成重链防错配结构。In some specific embodiments, the CH3 region of one heavy chain of the antibody contains a Knob domain, and the CH3 region of the other heavy chain of the antibody contains a Hole domain, and the Knob domain and the Hole domain pair to form a heavy chain anti-mismatching structure.
在一些具体的实施方式中,根据EU编号系统,上述含有Knob结构域的重链的CH3区包含氨基酸突变:T366W、K392D和K409D,上述含有Hole结构域的重链的CH3区包含氨基酸突变:L368R、D399K和Y407A。In some specific embodiments, according to the EU numbering system, the CH3 region of the heavy chain containing the Knob domain comprises the amino acid mutations: T366W, K392D and K409D, and the CH3 region of the heavy chain containing the Hole domain comprises the amino acid mutations: L368R, D399K and Y407A.
在本公开中,术语突变“AxxB”表示第xx位的氨基酸A突变为氨基酸B。例如,“T366W”表示第366位的苏氨酸(Thr;T)突变成色氨酸(Trp;W)。In the present disclosure, the term mutation "AxxB" means that the amino acid A at position xx is mutated to the amino acid B. For example, "T366W" means that the threonine (Thr; T) at position 366 is mutated to tryptophan (Trp; W).
在一些具体的实施方式中,上述白细胞介素单体或其变体插入至含有Knob结构域的重链上。In some specific embodiments, the above interleukin monomer or variant thereof is inserted into a heavy chain containing a Knob domain.
在一些具体的实施方式中,上述白细胞介素单体或其变体与上述抗体的含有Knob结构域的重链通过第一连接肽连接。In some specific embodiments, the interleukin monomer or variant thereof is connected to the heavy chain containing the Knob domain of the antibody via a first connecting peptide.
在一些具体的实施方式中,上述白细胞介素单体或其变体的N末端与上述抗体的含有Knob结构域的重链的CH2区的C末端通过第一连接肽连接,上述白细胞介素单体或其变体的C末端与上述抗体的含有Knob结构域的重链的CH3区的N末端通过第一连接肽连接。In some specific embodiments, the N-terminus of the interleukin monomer or its variant is connected to the C-terminus of the CH2 region of the heavy chain containing the Knob domain of the antibody through a first connecting peptide, and the C-terminus of the interleukin monomer or its variant is connected to the N-terminus of the CH3 region of the heavy chain containing the Knob domain of the antibody through a first connecting peptide.
在一些具体的实施方式中,上述抗体的含有Knob结构域的重链从N端到C端的结构如下:VH-CH1-hinge-CH2-L1-Int-L1-CH3(Knob);其中,L1代表:第一连接肽,Int代表:白细胞介素单体或其变体。In some specific embodiments, the structure of the heavy chain containing the Knob domain of the above-mentioned antibody from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-L1-Int-L1-CH3 (Knob); wherein L1 represents: the first connecting peptide, and Int represents: an interleukin monomer or a variant thereof.
在一些具体的实施方式中,上述抗体的含有Hole结构域的重链从N端到C端的结构如下:VH-CH1-hinge-CH2-CH3(Hole)。In some specific embodiments, the structure of the heavy chain containing the Hole domain of the above-mentioned antibody from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3 (Hole).
在一些具体的实施方式中,上述抗体的轻链从N端到C端的结构如下:VL-CL。In some specific embodiments, the structure of the light chain of the above antibody from N-terminus to C-terminus is as follows: VL-CL.
在一些具体的实施方式中,上述第一连接肽具有SEQ ID NO:6所示的氨基酸序列。In some specific embodiments, the above-mentioned first connecting peptide has an amino acid sequence shown in SEQ ID NO:6.
在一些具体的实施方式中,上述白细胞介素单体或其变体插入至上述抗体的位置为(ii);上述抗体包含防止轻链错配设计和防止重链错配设计。In some specific embodiments, the interleukin monomer or variant thereof is inserted into the position of the antibody (ii); the antibody comprises a design for preventing light chain mispairing and a design for preventing heavy chain mispairing.
在采用基因工程技术制备本公开融合蛋白时,若白细胞介素单体或其变体插入至上述抗体的其中一条轻链上时,可在抗体上引入防止轻链错配和重链错配的修饰:即防止两条相同的含白细胞介素单体或其变体的轻链与两条重链配对,也防止两条相同的不含白细胞介素单体或其变体的轻链与两条重链配对。When the fusion protein of the present invention is prepared by genetic engineering technology, if the interleukin monomer or its variant is inserted into one of the light chains of the above-mentioned antibody, a modification that prevents light chain mispairing and heavy chain mispairing can be introduced into the antibody: that is, two identical light chains containing the interleukin monomer or its variant are prevented from pairing with two heavy chains, and two identical light chains not containing the interleukin monomer or its variant are prevented from pairing with two heavy chains.
在本公开中,术语“防止轻链错配的修饰”是指本领域内技术人员用来防止轻链错配的一些设计或者修饰,包括但不限于Titin-Obscurin、CrossMab等。其中,Titin-Obscurin的核心设计在于一对互作蛋白的引入,即Titin(肌联蛋白)和Obscurin(遮蔽蛋白),将抗体一侧的CH1和CL分别用Titin和Obscurin替换,以避免轻链的错配。In the present disclosure, the term "modification to prevent light chain mispairing" refers to some designs or modifications used by those skilled in the art to prevent light chain mispairing, including but not limited to Titin-Obscurin, CrossMab, etc. Among them, the core design of Titin-Obscurin is the introduction of a pair of interacting proteins, namely Titin (titin) and Obscurin (obscurin), replacing CH1 and CL on one side of the antibody with Titin and Obscurin, respectively, to avoid light chain mispairing.
在一些具体的实施方式中,上述抗体的一条轻链的CL区被Obscurin结构域替换,上述抗体的一条重链的CH1区被Titin结构域替换,上述Obscurin结构域与上述Titin结构域配对形成轻链防错配结构;上述抗体的含Titin结构域的重链的CH3区含有Knob结构域,上述抗体的另一条重链的CH3区含有Hole结构域,上述Knob结构域与上述Hole结构域配对形成重链防错配结构。In some specific embodiments, the CL region of one light chain of the above-mentioned antibody is replaced by an Obscurin domain, the CH1 region of one heavy chain of the above-mentioned antibody is replaced by a Titin domain, and the Obscurin domain is paired with the Titin domain to form a light chain anti-mispairing structure; the CH3 region of the heavy chain containing the Titin domain of the above-mentioned antibody contains a Knob domain, and the CH3 region of the other heavy chain of the above-mentioned antibody contains a Hole domain, and the Knob domain is paired with the Hole domain to form a heavy chain anti-mispairing structure.
在一些具体的实施方式中,上述Obscurin结构域具有如SEQ ID NO:10所示的氨基酸序列,上述Titin结构域具有如SEQ ID NO:11所示的氨基酸序列; In some specific embodiments, the Obscurin domain has an amino acid sequence as shown in SEQ ID NO: 10, and the Titin domain has an amino acid sequence as shown in SEQ ID NO: 11;
在一些具体的实施方式中,根据EU编号系统,上述含有Knob结构域的重链的CH3区包含突变:T366W、K392D和K409D,上述含有Hole结构域的重链的CH3区包含突变:L368R、D399K和Y407A。In some specific embodiments, according to the EU numbering system, the CH3 region of the heavy chain containing the Knob domain comprises the mutations: T366W, K392D and K409D, and the CH3 region of the heavy chain containing the Hole domain comprises the mutations: L368R, D399K and Y407A.
在一些具体的实施方式中,上述白细胞介素单体或其变体插入至含Obscurin结构域的轻链上。In some specific embodiments, the above interleukin monomer or variant thereof is inserted into a light chain containing an obscurin domain.
在一些具体的实施方式中,上述白细胞介素单体或其变体与上述抗体的轻链的Obscurin结构域通过第三连接肽连接;上述抗体的Titin结构域与VH区通过第二连接肽连接。In some specific embodiments, the interleukin monomer or variant thereof is connected to the Obscurin domain of the light chain of the antibody via a third connecting peptide; and the Titin domain of the antibody is connected to the VH region via a second connecting peptide.
在一些具体的实施方式中,上述白细胞介素单体或其变体的N末端与上述抗体的含有Obscurin结构域的轻链的VL区的C末端通过第一连接肽连接,上述白细胞介素单体或其变体的C末端与上述抗体的轻链的Obscurin结构域的N末端通过第三连接肽连接;In some specific embodiments, the N-terminus of the interleukin monomer or variant thereof is connected to the C-terminus of the VL region of the light chain containing the Obscurin domain of the above-mentioned antibody via a first connecting peptide, and the C-terminus of the interleukin monomer or variant thereof is connected to the N-terminus of the Obscurin domain of the light chain of the above-mentioned antibody via a third connecting peptide;
上述Titin结构域的N末端与VH的C末端通过第二连接肽连接;The N-terminus of the titin domain is connected to the C-terminus of VH via a second connecting peptide;
在一些具体的实施方式中,上述抗体的含有Obscurin结构域的轻链从N端到C端的结构如下:VL-L1-Int-L3-Obs,其中,L1代表:第一连接肽,L3代表:第三连接肽,Int代表:白细胞介素单体或其变体,Obs代表:Obscurin结构域。In some specific embodiments, the structure of the light chain containing the Obscurin domain of the above-mentioned antibody from N-terminus to C-terminus is as follows: VL-L1-Int-L3-Obs, wherein L1 represents: the first connecting peptide, L3 represents: the third connecting peptide, Int represents: an interleukin monomer or a variant thereof, and Obs represents: an Obscurin domain.
在一些具体的实施方式中,上述抗体的不含Obscurin结构域的轻链从N端到C端的结构如下:VL-CL。In some specific embodiments, the structure of the light chain of the above antibody without the Obscurin domain from N-terminus to C-terminus is as follows: VL-CL.
在一些具体的实施方式中,上述抗体的含有Titin结构域和Knob结构域的重链从N端到C端的结构如下:VH-L2-Tit-CH2-CH3,其中,L2代表:第二连接肽,Tit代表:Titin结构域。In some specific embodiments, the structure of the heavy chain containing the Titin domain and the Knob domain of the above-mentioned antibody from N-terminus to C-terminus is as follows: VH-L2-Tit-CH2-CH3, wherein L2 represents: the second connecting peptide, and Tit represents: the Titin domain.
在一些具体的实施方式中,上述抗体的含有Hole结构域的重链从N端到C端的结构如下:VH-CH1-hinge-CH2-CH3。In some specific embodiments, the structure of the heavy chain containing the Hole domain of the above-mentioned antibody from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3.
在一些具体的实施方式中,上述第二连接肽具有如SEQ ID NO:12所示的氨基酸序列,上述第三连接肽具有如SEQ ID NO:13所示的氨基酸序列。In some specific embodiments, the second connecting peptide has an amino acid sequence as shown in SEQ ID NO:12, and the third connecting peptide has an amino acid sequence as shown in SEQ ID NO:13.
在一些具体的实施方式中,上述白细胞介素选自IL-10单体、IL-5单体、IL-12单体、IL-23单体、IL-25单体、IL-27单体、IL-35单体。In some specific embodiments, the above interleukin is selected from IL-10 monomer, IL-5 monomer, IL-12 monomer, IL-23 monomer, IL-25 monomer, IL-27 monomer, and IL-35 monomer.
在一些具体的实施方式中,上述白细胞介素单体为IL-10单体。In some specific embodiments, the interleukin monomer is an IL-10 monomer.
在一些具体的实施方式中,上述IL-10单体为天然IL-10单体或修饰后的IL-10单体。In some specific embodiments, the IL-10 monomer is a natural IL-10 monomer or a modified IL-10 monomer.
在一些具体的实施方式中,上述天然IL-10单体具有如SEQ ID NO:3所示的氨基酸序列。In some specific embodiments, the above-mentioned natural IL-10 monomer has an amino acid sequence as shown in SEQ ID NO:3.
在一些具体的实施方式中,所述修饰后的IL-10单体在天然IL-10单体分子序列的其中两个氨基酸位点之间插入一段间隔肽;In some specific embodiments, the modified IL-10 monomer has a spacer peptide inserted between two amino acid sites in the natural IL-10 monomer molecule sequence;
在一些具体的实施方式中,所述修饰后的IL-10单体在天然IL-10单体分子序列的116N、117K两个位点之间插入一段间隔肽;In some specific embodiments, the modified IL-10 monomer has a spacer peptide inserted between the 116N and 117K sites of the natural IL-10 monomer molecule sequence;
在一些具体的实施方式中,所述间隔肽包含SEQ ID NO:4所示的氨基酸序列;In some specific embodiments, the spacer peptide comprises the amino acid sequence shown in SEQ ID NO:4;
在一些具体的实施方式中,所述修饰后的IL-10单体缺失了天然IL-10单体分子序列的N末端的前2个氨基酸;In some specific embodiments, the modified IL-10 monomer lacks the first two amino acids at the N-terminus of the natural IL-10 monomer molecule sequence;
在一些具体的实施方式中,上述修饰后的IL-10单体具有如SEQ ID NO:5所示的氨基酸序列。In some specific embodiments, the modified IL-10 monomer has an amino acid sequence as shown in SEQ ID NO:5.
在一些具体的实施方式中,上述融合蛋白中的抗体特异性结合免疫检查点和/或肿瘤抗原。In some specific embodiments, the antibody in the above fusion protein specifically binds to immune checkpoints and/or tumor antigens.
在本公开中,术语“免疫检查点”是一类免疫抑制性分子,在免疫细胞上表达、能调节免疫激活程度,它们对防止自身免疫作用的发生起着重要作用。免疫检查点分子过度表达、功能过强或免疫抑制功能太差,都会导致机体的免疫功能出现异常。In the present disclosure, the term "immune checkpoint" refers to a class of immunosuppressive molecules that are expressed on immune cells and can regulate the degree of immune activation. They play an important role in preventing the occurrence of autoimmunity. Overexpression, overfunction or poor immunosuppression of immune checkpoint molecules can lead to abnormal immune function of the body.
在一些具体的实施方式中,上述免疫检查点分子选自PD-1、CD47、TIGIT、CD137、CD134、KIR、LAG-3、PD-L1、CTLA-4、B7.1、B7H3、CCRY、OX-40和CD40。In some specific embodiments, the above-mentioned immune checkpoint molecules are selected from PD-1, CD47, TIGIT, CD137, CD134, KIR, LAG-3, PD-L1, CTLA-4, B7.1, B7H3, CCRY, OX-40 and CD40.
在本公开中,术语“肿瘤抗原”是指源自或与肿瘤或癌症疾病相关的抗原性多肽或蛋白质,通常来源于肿瘤/癌细胞,可选地为哺乳动物肿瘤/癌细胞,并且可以位于来源于哺乳动物,可选地为来源于人类的肿瘤细胞中或肿瘤细胞的表面,例如全身性或实体瘤。“肿瘤抗原”通常包括肿瘤特异性抗原(TSA)和肿瘤相关抗原(TAA)。TSA通常由肿瘤特异性突变引起,并由肿瘤细胞特异性表达。TAA通常由肿瘤细胞和“正常”(健康、非肿瘤)细胞呈现。In the present disclosure, the term "tumor antigen" refers to an antigenic polypeptide or protein derived from or associated with a tumor or cancer disease, typically derived from a tumor/cancer cell, optionally a mammalian tumor/cancer cell, and may be located in or on the surface of a tumor cell derived from a mammal, optionally derived from a human, such as a systemic or solid tumor. "Tumor antigens" typically include tumor-specific antigens (TSAs) and tumor-associated antigens (TAAs). TSAs are typically caused by tumor-specific mutations and are specifically expressed by tumor cells. TAAs are typically presented by tumor cells and "normal" (healthy, non-tumor) cells.
在一些具体的实施方式中,上述肿瘤抗原选自GUCY2C、MSLN、Claudin18.2、GPC3、EGFR、HER2、CEA、GD2、EGFRⅧ、MUC1、PRLR、CLCA1、MUC12、GPR35、CR1L、MUC17、TMPRSS11B、MUC21、TMPRSS1IE、CD207、SLC30A8、CFC1、SLC12A3、SSTR1、GPR27、FZD10、TSHR、SIGLEC15、SLC6A3、KISSIR、QRFPR、GPR119、CLDN6、UPK2、ADAM12、SLC45A3、ACPP、MUC21、MUC16、MS4A12、ALPP、EphA2、FAP、IL13-Ra2、PSMA、ROR1、VEGFR-Ⅱ、FR-a、EpCAM、EGFRⅦ、tMUC1、PSCA、FCER2、GPR18、FCRLA、CXCR5、FCRL3、FCRL2、HTR3A、CLEC17A、TRPMI、SLC45A2、SLC24A5、DPEP3、KCNK16、LIM2,KCNV2、SLC26A4、CD171、Glypican-3、IL-13、CD79a/b和MAGEA4等。In some specific embodiments, the above tumor antigen is selected from GUCY2C, MSLN, Claudin18.2, GPC3, EGFR, HER2, CEA, GD2, EGFRⅧ, MUC1, PRLR, CLCA1, MUC12, GPR35, CR1L, MUC17, TMPRSS11B, MUC21, TMPRSS1IE, CD207, SLC30A8, CFC1, SLC12A3, SSTR1, GPR27, FZD10, TSHR, SIGLEC15, SLC6A3, KISSIR, QRFPR, GPR119, CLDN6, UPK2, ADAM12, S LC45A3, ACPP, MUC21, MUC16, MS4A12, ALPP, EphA2, FAP, IL13-Ra2, PSMA, ROR1, VEGFR-Ⅱ, FR-a, EpCAM, EGFRⅦ, tMUC1, PSCA, FCER2, GPR18, FCRLA, CXCR5, FCRL3, FCRL2, HTR3A, CLEC17A, TRPMI, SLC45A2, SLC24A5, DPEP3, KCNK16, LIM2, KCNV2, SLC26A4, CD171, Glypican-3, IL-13, CD79a/b and MAGEA4, etc.
在一些具体的实施方式中,上述抗体特异性结合PD-1。在本公开中,术语“PD-1”是指程序性死亡受体1,其属于免疫球蛋白超家族并且作为共抑制受体发挥负向调节免疫系统的作用。在本公开中,“PD-1”与“PD1”可互换使用。PD-1是CD28/CTLA-4家族的一员,有两个已知的配体,包括PD-L1和PD-L2。PD-1和PD-L1结合启动T细胞的程序性死亡,使肿瘤细胞获得免疫逃逸,以PD-1和PD-L1为靶点的免疫调节对抗肿瘤、抗感染、抗自身免疫性疾病及器官移植存活等均有重要的意义。人PD-1的代表性氨基酸序列公开于NCBI登录号:NP 005009.2,编码人PD-1的代表性核酸序列显示于NCBI登录号:NM 005018.2。In some specific embodiments, the above-mentioned antibodies specifically bind to PD-1. In the present disclosure, the term "PD-1" refers to programmed death receptor 1, which belongs to the immunoglobulin superfamily and acts as a co-inhibitory receptor to negatively regulate the immune system. In the present disclosure, "PD-1" and "PD1" are used interchangeably. PD-1 is a member of the CD28/CTLA-4 family and has two known ligands, including PD-L1 and PD-L2. PD-1 and PD-L1 bind to initiate programmed death of T cells, allowing tumor cells to obtain immune escape. Immunomodulation targeting PD-1 and PD-L1 is of great significance for anti-tumor, anti-infection, anti-autoimmune disease and organ transplant survival. The representative amino acid sequence of human PD-1 is disclosed in NCBI Accession No.: NP 005009.2, and the representative nucleic acid sequence encoding human PD-1 is shown in NCBI Accession No.: NM 005018.2.
在本公开的第二方面,本公开提供了一种多特异性结合分子,其包括前述的融合蛋白。In a second aspect of the present disclosure, the present disclosure provides a multispecific binding molecule, which includes the aforementioned fusion protein.
在本公开中,术语“多特异性结合分子”是指能够与两种或更多种不同的目标抗原或表位结合的多特异性分子。In the present disclosure, the term "multispecific binding molecule" refers to a multispecific molecule capable of binding to two or more different target antigens or epitopes.
在本公开的第三方面,本公开提供了一种核酸,其编码前述的融合蛋白。 In the third aspect of the present disclosure, the present disclosure provides a nucleic acid encoding the aforementioned fusion protein.
在本公开中,术语“核酸”在本文中可与术语“多核苷酸”互换使用,并且是指呈单链或双链形式的脱氧核糖核苷酸或核糖核苷酸及其聚合物,涵盖含有已知核苷酸类似物或修饰的骨架残基或连接的核酸,所述核酸是合成的、天然存在的和非天然存在的,具有与参考核酸相似的结合特性,并且以类似于参考核苷酸的方式代谢。此类类似物的实例包括但不限于硫代磷酸酯、氨基磷酸酯、甲基膦酸酯、手性-甲基膦酸酯、2-O-甲基核糖核苷酸、肽-核酸(PNA)。编码多肽或融合蛋白的核酸指编码多肽或融合蛋白的一个或更多个核酸分子,包括在单一载体或分开的载体中的这样的一个或更多个核酸分子,和存在于宿主细胞中一个或更多个位置的这样的一个或更多个核酸分子。除非另有说明,否则特定的核酸序列还隐含地涵盖其保守修饰的变体(例如,简并密码子取代)和互补序列以及明确指明的序列。In the present disclosure, the term "nucleic acid" is used interchangeably with the term "polynucleotide" herein, and refers to deoxyribonucleotides or ribonucleotides and polymers thereof in single-stranded or double-stranded form, covering nucleic acids containing known nucleotide analogs or modified backbone residues or connections, the nucleic acids are synthetic, naturally occurring and non-naturally occurring, have similar binding properties to reference nucleic acids, and are metabolized in a manner similar to reference nucleotides. Examples of such analogs include, but are not limited to, phosphorothioates, phosphoramidates, methylphosphonates, chiral-methylphosphonates, 2-O-methyl ribonucleotides, peptide-nucleic acids (PNAs). Nucleic acids encoding polypeptides or fusion proteins refer to one or more nucleic acid molecules encoding polypeptides or fusion proteins, including such one or more nucleic acid molecules in a single vector or separate vectors, and such one or more nucleic acid molecules present in one or more positions in a host cell. Unless otherwise indicated, a specific nucleic acid sequence also implicitly covers conservatively modified variants thereof (e.g., degenerate codon substitutions) and complementary sequences as well as explicitly indicated sequences.
在本公开的第四方面,本公开提供了一种表达载体,其含有前述的核酸。In a fourth aspect of the present disclosure, the present disclosure provides an expression vector containing the aforementioned nucleic acid.
在本公开中,术语“载体”是指可将遗传元件(例如前述核酸分子)操作性地插入其中并使该遗传元件获得表达的一种运载工具,例如产生由该遗传元件编码的蛋白质、RNA或DNA,或者复制所述遗传元件。载体可用于转化、转导或转染宿主细胞,使其携带的遗传元件在宿主细胞内得以表达。举例来说,载体包括:质粒、噬菌粒、柯斯质粒(cosmid)、人工染色体如酵母人工染色体(YAC)、细菌人工染色体(BAC)或P1衍生的人工染色体(PAC)、噬菌体如λ噬菌体或M13噬菌体,以及动物病毒等。载体可含有多种控制表达的元件,包括启动子序列、转录起始序列、增强子序列、选择元件及报告基因。另外,载体还可含有复制起始位点。载体还可包括协助其进入细胞的成分,包括但不限于,病毒颗粒、脂质体或蛋白外壳。载体可以是表达载体或克隆载体。在一些实施方案中,本公开提供的载体(例如表达载体)含有本公开所述的编码融合蛋白的核酸序列、至少一个可操作地连接至所述核酸序列的启动子(例如,SV40、CMV、EF-1α),以及至少一个选择标记。In the present disclosure, the term "vector" refers to a vehicle into which a genetic element (e.g., the aforementioned nucleic acid molecule) can be operatively inserted and the genetic element can be expressed, such as producing a protein, RNA or DNA encoded by the genetic element, or replicating the genetic element. The vector can be used to transform, transduce or transfect a host cell so that the genetic element it carries is expressed in the host cell. For example, vectors include: plasmids, phagemids, cosmids, artificial chromosomes such as yeast artificial chromosomes (YAC), bacterial artificial chromosomes (BAC) or P1-derived artificial chromosomes (PAC), phages such as lambda phage or M13 phage, and animal viruses, etc. The vector may contain a variety of elements for controlling expression, including promoter sequences, transcription initiation sequences, enhancer sequences, selection elements and reporter genes. In addition, the vector may also contain a replication initiation site. The vector may also include components that assist it in entering the cell, including, but not limited to, viral particles, liposomes or protein shells. The vector may be an expression vector or a cloning vector. In some embodiments, the vectors (e.g., expression vectors) provided by the present disclosure contain a nucleic acid sequence encoding a fusion protein as described in the present disclosure, at least one promoter (e.g., SV40, CMV, EF-1α) operably linked to the nucleic acid sequence, and at least one selection marker.
在本公开的第五方面,本公开提供了一种重组细胞,其携带前述的核酸、前述的表达载体、表达前述的融合蛋白或表达前述的多特异性结合分子。In a fifth aspect of the present disclosure, the present disclosure provides a recombinant cell, which carries the aforementioned nucleic acid, the aforementioned expression vector, expresses the aforementioned fusion protein, or expresses the aforementioned multi-specific binding molecule.
在本公开中,术语“重组细胞”是指可以或已经导入外源多核苷酸和/或载体的细胞。该重组细胞中包含有该载体,可以将载体导入到哺乳动物细胞中,构建获得重组细胞,然后利用这些重组细胞表达本公开提供的抗体或者抗原结合片段。对该重组细胞进行培养,即可以获得相应抗体或融合蛋白。可用的哺乳动物细胞可以为CHO细胞等。In the present disclosure, the term "recombinant cell" refers to a cell into which an exogenous polynucleotide and/or vector can be or has been introduced. The recombinant cell contains the vector, which can be introduced into a mammalian cell to construct a recombinant cell, and then the recombinant cell is used to express the antibody or antigen-binding fragment provided by the present disclosure. The recombinant cell is cultured to obtain the corresponding antibody or fusion protein. The mammalian cell that can be used can be a CHO cell, etc.
在本公开的第六方面,本公开提供了前述的融合蛋白、前述的多特异性结合分子前述的核酸、前述的表达载体或前述的重组细胞在制备药物中的用途,上述药物用于治疗、预防或诊断肿瘤或炎性疾病。In the sixth aspect of the present disclosure, the present disclosure provides the use of the aforementioned fusion protein, the aforementioned multi-specific binding molecule, the aforementioned nucleic acid, the aforementioned expression vector or the aforementioned recombinant cell in the preparation of a drug, wherein the aforementioned drug is used to treat, prevent or diagnose tumors or inflammatory diseases.
在本公开中,术语“治疗或预防”指试图改变所治疗个体的天然过程的临床干预,并且可以为了预防或者在临床病理学的过程期间实施。治疗或预防的期望效果包括但不限于预防疾病的发生或再发生,减轻症状,减轻/减少疾病的任何直接或间接病理后果,预防转移,降低疾病进展速率,改善或减轻疾病状态,和消退或改善的预后。In this disclosure, the term "treatment or prevention" refers to clinical intervention that attempts to alter the natural course of the individual being treated, and can be performed for prevention or during the course of clinical pathology. The desired effects of treatment or prevention include, but are not limited to, preventing the occurrence or recurrence of the disease, alleviating symptoms, alleviating/reducing any direct or indirect pathological consequences of the disease, preventing metastasis, reducing the rate of disease progression, ameliorating or alleviating the disease state, and regression or improved prognosis.
在本公开在,术语“诊断”是指病理状态、疾病或状况的鉴定、揭示、查明和/或定义致病过程的定位。在一些具体的实施方式中,本公开中的药物组合物施用于受试者或接触来自受试者的样品时,有助于诊断癌症、肿瘤形成或状况。In the present disclosure, the term "diagnosis" refers to the identification, disclosure, identification and/or definition of the location of the pathogenic process of a pathological state, disease or condition. In some specific embodiments, the pharmaceutical composition of the present disclosure, when administered to a subject or contacted with a sample from a subject, helps diagnose cancer, tumor formation or condition.
在本公开中,术语“癌症”和“肿瘤”可互换使用,是指多细胞生物体内异常的细胞团,由不受控制和进行性的过度细胞分裂引起,不受控制的生长会导致这些细胞侵入、进入甚至破坏邻近组织。癌细胞也可以扩散到其他位置,这可能导致转移的形成。In this disclosure, the terms "cancer" and "tumor" are used interchangeably and refer to an abnormal mass of cells in a multicellular organism caused by uncontrolled and progressive excessive cell division. Uncontrolled growth can cause these cells to invade, enter, and even destroy adjacent tissues. Cancer cells can also spread to other locations, which can lead to the formation of metastases.
在本公开中,术语“炎性疾病”是指以异常炎症为特征的疾病或病症(例如,与对照如未患疾病的健康人相比炎症水平增加)。炎性疾病的实例包括但不限于自身免疫性疾病、关节炎、类风湿性关节炎、银屑病关节炎、幼年特发性关节炎、多发性硬化、系统性红斑狼疮(SLE)、重症肌无力、幼年发病糖尿病、1型糖尿病、格林-巴利综合征、桥本脑炎、桥本氏甲状腺炎、强直性脊柱炎、牛皮癣、干燥综合征、血管炎、肾小球肾炎、自身免疫性甲状腺炎、白塞病、克罗恩病、溃疡性结肠炎、大疱性类天疱疮、结节病、鱼鳞病、格雷夫斯眼病、炎症性肠病、艾迪生病、白癜风、哮喘、过敏性哮喘、寻常痤疮、乳糜泻、慢性前列腺炎、炎症性肠病、盆腔炎、再灌注损伤、缺血再灌注损伤、中风、结节病、移植排斥、间质性膀胱炎、动脉粥样硬化、硬皮病和特应性皮炎等。In this disclosure, the term "inflammatory disease" refers to a disease or condition characterized by abnormal inflammation (eg, increased levels of inflammation compared to a control, such as a healthy person not suffering from the disease). Examples of inflammatory diseases include, but are not limited to, autoimmune diseases, arthritis, rheumatoid arthritis, psoriatic arthritis, juvenile idiopathic arthritis, multiple sclerosis, systemic lupus erythematosus (SLE), myasthenia gravis, juvenile onset diabetes, type 1 diabetes, Guillain-Barré syndrome, Hashimoto's encephalitis, Hashimoto's thyroiditis, ankylosing spondylitis, psoriasis, Sjögren's syndrome, vasculitis, glomerulonephritis, autoimmune thyroiditis, Behcet's disease, Crohn's disease, ulcerative colitis, bullous pemphigoid, sarcoidosis, ichthyosis, Graves' ophthalmopathy, inflammatory bowel disease, Addison's disease, vitiligo, asthma, allergic asthma, acne vulgaris, celiac disease, chronic prostatitis, inflammatory bowel disease, pelvic inflammatory disease, reperfusion injury, ischemia-reperfusion injury, stroke, sarcoidosis, transplant rejection, interstitial cystitis, atherosclerosis, scleroderma, and atopic dermatitis, among others.
在本公开的第七方面,本公开提供了一种药物组合物,其包含前述的融合蛋白、前述的多特异性结合分子、前述的核酸、前述的表达载体或前述的重组细胞。In a seventh aspect of the present disclosure, the present disclosure provides a pharmaceutical composition comprising the aforementioned fusion protein, the aforementioned multispecific binding molecule, the aforementioned nucleic acid, the aforementioned expression vector or the aforementioned recombinant cell.
在本公开中,术语“药物组合物”是以允许活性成分的生物学活性有效的形式存在,并且不包含对将施用所述组合物的对象具有不可接受的毒性的另外的成分。In the present disclosure, the term "pharmaceutical composition" is in a form that permits the biological activity of the active ingredient to be effective, and does not contain additional ingredients that are unacceptably toxic to a subject to which the composition would be administered.
在一些具体的实施方式中,上述药物组合物还包括药学上可接受的载体。In some specific embodiments, the above-mentioned pharmaceutical composition further comprises a pharmaceutically acceptable carrier.
在本公开中,术语“药学上可接受的载体”指药学配制剂中与活性成分不同的,且对受试者无毒的成分,包括但不限于缓冲剂、赋形剂、稳定剂、防腐剂、或生理学上相容的任何溶剂等。In the present disclosure, the term "pharmaceutically acceptable carrier" refers to ingredients in pharmaceutical formulations that are different from the active ingredient and are non-toxic to the subject, including but not limited to buffers, excipients, stabilizers, preservatives, or any physiologically compatible solvents, etc.
在本公开的第八方面,本公开提供了一种治疗、预防或诊断肿瘤或炎性疾病、病症或状况的方法,其包括向受试者施用治疗有效量的前述药物组合物。In an eighth aspect of the present disclosure, the present disclosure provides a method for treating, preventing or diagnosing a tumor or inflammatory disease, disorder or condition, comprising administering a therapeutically effective amount of the aforementioned pharmaceutical composition to a subject.
在本公开中,术语“受试者”或“患者”是指哺乳动物受试者或患者。除非指出时,否则所述术语“患者”或“受试者”在本文中可互换地使用。示例性受试者包括但不限于人、猴、犬、猫、小鼠、大鼠、牛、马、骆驼、禽、山羊和绵羊。在某些实施方案,所述受试者是人。在一些实施方案,所述受试者是疑似患有癌症、自体免疫性疾病或病况、和/或感染的人。 In the present disclosure, the term "subject" or "patient" refers to a mammalian subject or patient. Unless otherwise indicated, the terms "patient" or "subject" are used interchangeably herein. Exemplary subjects include, but are not limited to, humans, monkeys, dogs, cats, mice, rats, cattle, horses, camels, birds, goats, and sheep. In certain embodiments, the subject is a human. In some embodiments, the subject is a human suspected of having cancer, an autoimmune disease or condition, and/or an infection.
在本公开中,术语“施用”或“给予”,当其应用于动物、人、实验受试者、细胞、组织、器官或生物流体时,是指外源性药物、治疗剂、诊断剂或组合物与动物、人、受试者、细胞、组织、器官或生物流体的接触。In the present disclosure, the term "administering" or "administering", as it applies to an animal, a human, an experimental subject, a cell, a tissue, an organ or a biological fluid, refers to the contact of an exogenous drug, therapeutic agent, diagnostic agent or composition with the animal, human, subject, cell, tissue, organ or biological fluid.
在本公开中,术语“有效量”一般是指足以降低症状的严重程度及/或频率、消除这些症状及/或潜在病因、预防症状及/或其潜在病因出现及/或改良或改善由疾病状态引起或与其相关的损伤(例如肺病)的量。在一些实施例中,有效量是治疗有效量或预防有效量。In the present disclosure, the term "effective amount" generally refers to an amount sufficient to reduce the severity and/or frequency of symptoms, eliminate these symptoms and/or potential causes, prevent the occurrence of symptoms and/or their potential causes, and/or improve or ameliorate damage (e.g., lung disease) caused by or associated with a disease state. In some embodiments, an effective amount is a therapeutically effective amount or a prophylactically effective amount.
在本公开中,术语“治疗有效量”是足以治疗疾病状态或症状、尤其与该疾病状态相关的状态或症状,或者以其他方式预防、阻碍、延迟或逆转该疾病状态或以任何方式与该疾病相关的任何其他不理想症状的进展的量。In the present disclosure, the term "therapeutically effective amount" is an amount sufficient to treat a disease state or symptom, particularly a state or symptom associated with the disease state, or otherwise prevent, hinder, delay or reverse the progression of the disease state or any other undesirable symptoms associated in any way with the disease.
在本公开中,术语“预防有效量”是当给予受试者时将具有预定预防效应,例如预防或延迟该疾病状态的发作(或复发),或者降低该疾病状态或相关症状的发作(或复发)可能性的量。完全治疗或预防未必在给予一个剂量之后便发生,可能在给予一系列剂量之后发生。因而,治疗或预防有效量可以一次或多次给予的方式给予。In the present disclosure, the term "prophylactically effective amount" is an amount that, when administered to a subject, will have a predetermined preventive effect, such as preventing or delaying the onset (or recurrence) of the disease state, or reducing the likelihood of the onset (or recurrence) of the disease state or associated symptoms. Complete treatment or prevention may not occur after administration of one dose, but may occur after administration of a series of doses. Thus, a therapeutically or prophylactically effective amount may be administered in one or more administrations.
在本公开中,术语“治疗有效量”和“预防有效量”可取决于多种因素变化,诸如个体的疾病状态、年龄、性别和体重,以及治疗剂或治疗剂组合在个体中引发期望的应答的能力。有效治疗剂或治疗剂组合的示例性指标包括例如患者改善的健康状况。In the present disclosure, the terms "therapeutically effective amount" and "prophylactically effective amount" may vary depending on a variety of factors, such as the disease state, age, sex, and weight of the individual, and the ability of the therapeutic agent or combination of therapeutic agents to elicit a desired response in the individual. Exemplary indicators of an effective therapeutic agent or combination of therapeutic agents include, for example, improved health status of the patient.
具体实施方式Detailed ways
为使本公开实施例的目的、技术方案和优点更加清楚,下面将对本公开实施例中的技术方案进行清楚、完整地描述。实施例中未注明具体条件者,按照常规条件或制造商建议的条件进行。所用试剂或仪器未注明生产厂商者,均为可以通过市售购买获得的常规产品。In order to make the purpose, technical scheme and advantages of the embodiments of the present disclosure clearer, the technical scheme in the embodiments of the present disclosure will be described clearly and completely below. If the specific conditions are not specified in the embodiments, they are carried out according to conventional conditions or conditions recommended by the manufacturer. If the manufacturer of the reagents or instruments used is not specified, they are all conventional products that can be purchased commercially.
除非另外指明,否则实践本公开将采用细胞生物学、分子生物学(包含重组技术)、微生物学、生物化学和免疫学的常规技术,所述常规技术在本领域技术人员的能力范围内。文献中充分解释了这种技术,如《分子克隆:实验室手册(Molecular Cloning:ALaboratory Manual)》,第二版(Sambrook等人,1989);《寡核苷酸合成(OligonucleotideSynthesis)》(M.J.Gait编,1984);《动物细胞培养(Animal Cell Culture)》(R.I.Freshney编,1987);《酶学方法(Methods in Enzymology)》(学术出版社有限公司(Academic Press,Inc.);《实验免疫学手册(Handbook of Experimental Immunology)》(D.M.Weir和C.C.Blackwell编);《哺乳动物细胞用基因转移载体(Gene Transfer Vectors forMammalian Cells)》(J.M.Miller和M.P.Calos编,1987);《当代分子生物学方法(CurrentProtocols in Molecular Biology)》(F.M.Ausubel等人编,1987);《PCR:聚合酶链反应(PCR:The Polymerase Chain Reaction)》(Mullis等人编,1994);以及《当代免疫学方法(Current Protocols in Immunology)》(J.E.Coligan等人编,1991),所述文献中的每个文献均通过引用明确并入本文中。Unless otherwise indicated, the practice of the present disclosure will employ conventional techniques of cell biology, molecular biology (including recombinant techniques), microbiology, biochemistry, and immunology, which are within the capabilities of those skilled in the art. Such techniques are fully explained in the literature, such as Molecular Cloning: A Laboratory Manual, Second Edition (Sambrook et al., 1989); Oligonucleotide Synthesis (M.J. Gait, ed., 1984); Animal Cell Culture (R.I. Freshney, ed., 1987); Methods in Enzymology (Academic Press, Inc.); Handbook of Experimental Immunology (D.M. Weir and C.C. Blackwe ll ed.); Gene Transfer Vectors for Mammalian Cells (J. M. Miller and M. P. Calos ed., 1987); Current Protocols in Molecular Biology (F. M. Ausubel et al. ed., 1987); PCR: The Polymerase Chain Reaction (Mullis et al. ed., 1994); and Current Protocols in Immunology (J. E. Coligan et al. ed., 1991), each of which is expressly incorporated herein by reference.
以下结合实施例对本公开的特征和性能作进一步的详细描述。The features and performance of the present invention are further described in detail below in conjunction with the embodiments.
实施例1Example 1
IL-10单体融合蛋白的构建方法Method for constructing IL-10 monomer fusion protein
本实施例将IL-10单体插入到抗体分子(本实施例以抗PD-1抗体为例,本公开所用抗PD-1抗体的重链、轻链氨基酸序列分别如SEQ ID NO:1、SEQ ID NO:2所示)的不同位置中以获得融合蛋白,其中,IL-10单体分子的构建的具体实验操作主要参考《分子克隆实验指南》。In this embodiment, IL-10 monomers are inserted into different positions of antibody molecules (this embodiment takes anti-PD-1 antibody as an example, and the heavy chain and light chain amino acid sequences of the anti-PD-1 antibody used in the present disclosure are shown in SEQ ID NO: 1 and SEQ ID NO: 2, respectively) to obtain a fusion protein, wherein the specific experimental operations for the construction of IL-10 monomer molecules mainly refer to the "Molecular Cloning Experiment Guide".
天然IL-10单体分子(即IL-10WT)的氨基酸序列如SEQ ID NO:3所示,在天然IL-10单体分子序列的116N、117K两个位点之间插入如SEQ ID NO:4所示的氨基酸序列的间隔肽,同时去除天然IL-10单体的N末端的前2个氨基酸,从而形成本公开实施例的修饰后的IL-10单体(即IL-10M),其序列如SEQ ID NO:5所示。The amino acid sequence of the natural IL-10 monomer molecule (i.e., IL-10WT) is shown in SEQ ID NO:3, and a spacer peptide with an amino acid sequence as shown in SEQ ID NO:4 is inserted between the two sites 116N and 117K of the natural IL-10 monomer molecule sequence, and the first two amino acids at the N-terminus of the natural IL-10 monomer are removed, thereby forming the modified IL-10 monomer (i.e., IL-10M) of the embodiment of the present disclosure, whose sequence is shown in SEQ ID NO:5.
抗PD-1抗体的重链的氨基酸序列:
Amino acid sequence of the heavy chain of anti-PD-1 antibody:
抗PD-1抗体的轻链的氨基酸序列:
Amino acid sequence of the light chain of the anti-PD-1 antibody:
天然IL-10单体分子的氨基酸序列:
Amino acid sequence of natural IL-10 monomer molecule:
间隔肽的氨基酸序列:
Amino acid sequence of the spacer peptide:
本实施例修饰后的IL-10单体(后文也用“IL-10单体”或“IL-10M”表示)的氨基酸序列:
The amino acid sequence of the modified IL-10 monomer (hereinafter also referred to as "IL-10 monomer" or "IL-10M") of this example is:
示例性融合蛋白R1738的构建Construction of exemplary fusion protein R1738
按照EU编号,将抗体的一条重链的CH3的三个氨基酸位点进行突变:T366W、K392D和K409D,形成Knob结构域,另一条重链的CH3的三个氨基酸位点进行突变:L368R、D399K和Y407A,形成Hole结构域,Knob结构域与Hole结构域配对形成KIH重链防错配结构。抗体的两条轻链相同,不做任何修饰。According to EU numbering, three amino acid sites of CH3 of one heavy chain of the antibody were mutated: T366W, K392D and K409D to form a Knob domain, and three amino acid sites of CH3 of the other heavy chain were mutated: L368R, D399K and Y407A to form a Hole domain. The Knob domain and the Hole domain are paired to form a KIH heavy chain anti-mismatching structure. The two light chains of the antibody are the same and no modification is made.
将IL-10单体的N末端与抗体的含有Knob结构域的重链的CH2区的C末端通过具有如SEQ ID NO:6所示的氨基酸序列的肽段(即,第一连接肽,L1,linker1)连接,IL-10单体的C末端与抗体的含有Knob结构域的重链的CH3区的N末端通过第一连接肽连接。所得示例性融合蛋白R1738具有如SEQ ID NO:7(含有Knob结构域的重链)、SEQ ID NO:8(含有Hole结构域的重链)和SEQ ID NO:9(轻链)所示的氨基酸序列,融合蛋白的具体结构如图3A所示(图中展示了IL-10单体的插入位置)。The N-terminus of the IL-10 monomer is connected to the C-terminus of the CH2 region of the heavy chain containing the Knob domain of the antibody through a peptide having an amino acid sequence as shown in SEQ ID NO:6 (i.e., the first connecting peptide, L1, linker1), and the C-terminus of the IL-10 monomer is connected to the N-terminus of the CH3 region of the heavy chain containing the Knob domain of the antibody through the first connecting peptide. The resulting exemplary fusion protein R1738 has an amino acid sequence as shown in SEQ ID NO:7 (heavy chain containing the Knob domain), SEQ ID NO:8 (heavy chain containing the Hole domain) and SEQ ID NO:9 (light chain), and the specific structure of the fusion protein is shown in Figure 3A (the insertion position of the IL-10 monomer is shown in the figure).
第一连接肽的氨基酸序列:
Amino acid sequence of the first connecting peptide:
融合蛋白R1738中含有Knob结构域的重链从N端到C端的结构如下:VH-CH1-hinge-CH2-L1-IL10-L1-CH3,其中,L1代表:第一连接肽
The structure of the heavy chain containing the Knob domain in the fusion protein R1738 from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-L1-IL10-L1-CH3, where L1 represents: the first connecting peptide
融合蛋白R1738中含有Hole结构域的重链从N端到C端的结构如下:VH-CH1-hinge-CH2-CH3
The structure of the heavy chain containing the Hole domain in the fusion protein R1738 from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3
融合蛋白R1738的轻链从N端到C端的结构如下:VL-CL
The structure of the light chain of fusion protein R1738 from N-terminus to C-terminus is as follows: VL-CL
示例性融合蛋白R1737的构建Construction of exemplary fusion protein R1737
抗体的一条轻链的CL区被具有如SEQ ID NO:10所示的氨基酸序列的Obscurin结构域替换,抗体的一条重链的CH1区被具有如SEQ ID NO:11所示的氨基酸序列的Titin结构域替换,Titin结构域的N末端与VH的C末端通过具有如SEQ ID NO:12所示的氨基酸序列的肽段(即,第二连接肽,L2)连接,Obscurin结构域与Titin结构域配对形成轻链防错配结构;按照EU编号,将抗体中含有Knob结构域的重链的CH3的三个氨基酸位点进行突变:T366W、K392D和K409D,形成Knob结构域,另一条重链的CH3的三个氨基酸位点进行突变:L368R、D399K和Y407A,形成Hole结构域,Knob结构域与Hole结构域配对形成KIH重链防错配结构。The CL region of one light chain of the antibody is replaced by an Obscurin domain having an amino acid sequence as shown in SEQ ID NO:10, the CH1 region of one heavy chain of the antibody is replaced by a Titin domain having an amino acid sequence as shown in SEQ ID NO:11, the N-terminus of the Titin domain is connected to the C-terminus of the VH via a peptide segment having an amino acid sequence as shown in SEQ ID NO:12 (i.e., the second connecting peptide, L2), and the Obscurin domain and the Titin domain are paired to form a light chain anti-mismatch structure; according to EU numbering, three amino acid sites of the CH3 of the heavy chain containing the Knob domain in the antibody are mutated as T366W, K392D and K409D to form a Knob domain, and three amino acid sites of the CH3 of the other heavy chain are mutated as L368R, D399K and Y407A to form a Hole domain, and the Knob domain and the Hole domain are paired to form a KIH heavy chain anti-mismatch structure.
将IL-10单体的N末端与抗体的含有Obscurin结构域的轻链的VL区的C末端通过第一连接肽连接,IL-10单体的C末端与抗体的Obscurin结构域的N末端通过具有如SEQ ID NO:13所示的氨基酸序列的肽段(即,第三连接肽,L3)连接。所得示例性融合蛋白R1737具有如SEQ ID NO:14(含有Obscurin结构域的轻链)和SEQ ID NO:9(不含Obscurin结构域的轻链)、SEQ ID NO:15(含有Titin结构域和Knob结构域的重链)、SEQ ID NO:8(含有Hole结构域的重链)所示的氨基酸序列,融合蛋白的具体结构如图3C所示(图中展示了IL-10单体的插入位置)。The N-terminus of the IL-10 monomer is connected to the C-terminus of the VL region of the light chain containing the Obscurin domain of the antibody through the first connecting peptide, and the C-terminus of the IL-10 monomer is connected to the N-terminus of the Obscurin domain of the antibody through a peptide segment having an amino acid sequence as shown in SEQ ID NO: 13 (i.e., the third connecting peptide, L3). The resulting exemplary fusion protein R1737 has an amino acid sequence as shown in SEQ ID NO: 14 (light chain containing the Obscurin domain) and SEQ ID NO: 9 (light chain without the Obscurin domain), SEQ ID NO: 15 (heavy chain containing the Titin domain and the Knob domain), and SEQ ID NO: 8 (heavy chain containing the Hole domain). The specific structure of the fusion protein is shown in Figure 3C (the insertion position of the IL-10 monomer is shown in the figure).
Obscurin结构域的氨基酸序列:
Amino acid sequence of the obscurin domain:
Titin结构域的氨基酸序列:
Amino acid sequence of titin domain:
第二连接肽的氨基酸序列:
Amino acid sequence of the second connecting peptide:
第三连接肽的氨基酸序列:
Amino acid sequence of the third connecting peptide:
融合蛋白R1737中含有Obscurin结构域的轻链从N端到C端的结构如下:VL-L1-IL10-L3-Obs,其中,L1代表:第一连接肽,L3代表:第三连接肽,Obs代表:Obscurin结构域
The structure of the light chain containing the Obscurin domain in the fusion protein R1737 from the N-terminus to the C-terminus is as follows: VL-L1-IL10-L3-Obs, where L1 represents: the first connecting peptide, L3 represents: the third connecting peptide, and Obs represents: the Obscurin domain
融合蛋白R1737中不含Obscurin结构域的轻链从N端到C端的结构如下:VL-CL
The structure of the light chain without the obscurin domain in the fusion protein R1737 from N-terminus to C-terminus is as follows: VL-CL
融合蛋白R1737中含有Titin结构域和Knob结构域的重链从N端到C端的结构如下:VH-L2-Tit-hinge-CH2-CH3,其中,L2代表:第三连接肽,Tit代表:Titin结构域
The structure of the heavy chain containing the titin domain and the knob domain in the fusion protein R1737 from the N-terminus to the C-terminus is as follows: VH-L2-Tit-hinge-CH2-CH3, where L2 represents: the third connecting peptide, and Tit represents: the titin domain
融合蛋白R1737中含有Hole结构域的重链从N端到C端的结构如下:VH-CH1-hinge-CH2-CH3
The structure of the heavy chain containing the Hole domain in the fusion protein R1737 from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3
对照融合蛋白R1739的构建Construction of control fusion protein R1739
抗体的一条轻链的CL区被具有如SEQ ID NO:10所示的氨基酸序列的Obscurin结构域替换,Obscurin结构域的N末端与VL的C末端通过具有如SEQ ID NO:16所示的氨基酸序列的肽段(即,第四连接肽,L4)连接,抗体的一条重链的CH1区被具有如SEQ ID NO:11所示的氨基酸序列的Titin结构域替换,Titin结构域的N末端与VH的C末端通过第二连接肽连接,Obscurin结构域与Titin结构域配对形成轻链防错配结构;按照EU编号,将抗体中含有Knob结构域的重链的CH3的三个氨基酸位点进行突变:T366W、K392D和K409D,形成Knob结构域,另一条重链的CH3的三个氨基酸位点进行突变:L368R、D399K和Y407A,形成Hole结构域,Knob结构域与Hole结构域配对形成KIH重链防错配结构。The CL region of one light chain of the antibody is replaced by an Obscurin domain having an amino acid sequence as shown in SEQ ID NO: 10, and the N-terminus of the Obscurin domain is connected to the C-terminus of VL via a peptide segment having an amino acid sequence as shown in SEQ ID NO: 16 (i.e., the fourth connecting peptide, L4), and the CH1 region of one heavy chain of the antibody is replaced by a Titin domain having an amino acid sequence as shown in SEQ ID NO: 11, and the N-terminus of the Titin domain is connected to the C-terminus of VH via a second connecting peptide segment. The Obscurin domain is connected by a connecting peptide, and the Titin domain is paired with the light chain anti-mismatching structure; according to EU numbering, the three amino acid sites of CH3 of the heavy chain containing the Knob domain in the antibody are mutated: T366W, K392D and K409D to form the Knob domain, and the three amino acid sites of CH3 of the other heavy chain are mutated: L368R, D399K and Y407A to form the Hole domain, and the Knob domain is paired with the Hole domain to form the KIH heavy chain anti-mismatching structure.
将IL-10单体的N末端与抗体的轻链的Obscurin结构域的C末端通过具有如SEQ ID NO:17所示的氨基酸序列的肽段(即,第5连接肽,L5)连接。所得对照融合蛋白R1739具有如SEQ ID NO:18(含有Obscurin结构域的轻链)和SEQ ID NO:9(不含Obscurin结构域的轻链)、SEQ ID NO:15(含有Knob结构域和Titin结构域的重链)、SEQ ID NO:8(含有Hole结构域的重链)所示的氨基酸序列,融合蛋白的具体结构如图3D所示(图中展示了IL-10单体的插入位置)。The N-terminus of the IL-10 monomer was connected to the C-terminus of the Obscurin domain of the light chain of the antibody through a peptide having an amino acid sequence as shown in SEQ ID NO: 17 (i.e., the fifth connecting peptide, L5). The resulting control fusion protein R1739 has an amino acid sequence as shown in SEQ ID NO: 18 (light chain containing the Obscurin domain), SEQ ID NO: 9 (light chain without the Obscurin domain), SEQ ID NO: 15 (heavy chain containing the Knob domain and the Titin domain), and SEQ ID NO: 8 (heavy chain containing the Hole domain). The specific structure of the fusion protein is shown in FIG3D (the insertion position of the IL-10 monomer is shown in the figure).
第四连接肽的氨基酸序列:
Amino acid sequence of the fourth connecting peptide:
第五连接肽的氨基酸序列:
Amino acid sequence of the fifth connecting peptide:
融合蛋白R1739中含有Obscurin结构域的轻链从N端到C端的结构如下:VL-L4-Obs-L5-IL10,其中,L4代表:第四连接肽,Obs代表:Obscurin结构域,L5代表:第五连接肽
The structure of the light chain containing the Obscurin domain in the fusion protein R1739 from the N-terminus to the C-terminus is as follows: VL-L4-Obs-L5-IL10, wherein L4 represents: the fourth connecting peptide, Obs represents: the Obscurin domain, and L5 represents: the fifth connecting peptide
融合蛋白R1739中不含Obscurin结构域的轻链从N端到C端的结构如下:VL-CL
The structure of the light chain without the obscurin domain in the fusion protein R1739 from N-terminus to C-terminus is as follows: VL-CL
融合蛋白R1739中含有Titin结构域和Knob结构域的重链从N端到C端的结构如下:VH-L2-Tit-hinge-CH2-CH3,其中,Tit代表:Titin结构域
The structure of the heavy chain containing the titin domain and the knob domain in the fusion protein R1739 from the N-terminus to the C-terminus is as follows: VH-L2-Tit-hinge-CH2-CH3, where Tit represents: titin domain
融合蛋白R1739中含有Hole结构域的重链从N端到C端的结构如下:VH-CH1-hinge-CH2-CH3
The structure of the heavy chain containing the Hole domain in the fusion protein R1739 from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3
对照融合蛋白R1740的构建Construction of control fusion protein R1740
按照EU编号,将抗体的一条重链的CH3的三个氨基酸位点进行突变:T366W、K392D和K409D,形成Knob结构域,另一条重链的CH3的三个氨基酸位点进行突变:L368R、D399K和Y407A,形成Hole结构域,Knob结构域与Hole结构域配对形成KIH重链防错配结构。抗体的两条轻链相同,不做任何修饰。According to EU numbering, three amino acid sites of CH3 of one heavy chain of the antibody were mutated: T366W, K392D and K409D to form a Knob domain, and three amino acid sites of CH3 of the other heavy chain were mutated: L368R, D399K and Y407A to form a Hole domain. The Knob domain and the Hole domain are paired to form a KIH heavy chain anti-mismatching structure. The two light chains of the antibody are the same and no modification is made.
将IL-10单体的N末端与抗体的含有Knob结构域的重链的CH3区的C末端通过第五连接肽连接。所得示例性融合蛋白R1740具有如SEQ ID NO:19(含有Knob结构域的重链)、SEQ ID NO:8(含有Hole结构域的重链)和SEQ ID NO:9(轻链)所示的氨基酸序列,融合蛋白的具体结构如图3B所示(图中展示了IL-10单体的插入位置)。The N-terminus of the IL-10 monomer is connected to the C-terminus of the CH3 region of the heavy chain containing the Knob domain of the antibody through the fifth connecting peptide. The resulting exemplary fusion protein R1740 has an amino acid sequence as shown in SEQ ID NO: 19 (heavy chain containing the Knob domain), SEQ ID NO: 8 (heavy chain containing the Hole domain) and SEQ ID NO: 9 (light chain), and the specific structure of the fusion protein is shown in Figure 3B (the insertion position of the IL-10 monomer is shown in the figure).
融合蛋白R1740中含有Knob结构域的重链从N端到C端的结构如下:VH-CH1-hinge-CH2-CH3-L5-IL10,其中,L5代表:第五连接肽
The structure of the heavy chain containing the Knob domain in the fusion protein R1740 from the N-terminus to the C-terminus is as follows: VH-CH1-hinge-CH2-CH3-L5-IL10, where L5 represents: the fifth connecting peptide
融合蛋白R1740中含有Hole结构域的重链从N端到C端的结构如下:VH-CH1-hinge-CH2-CH3
The structure of the heavy chain containing the Hole domain in the fusion protein R1740 from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3
融合蛋白R1740的轻链从N端到C端的结构如下:VL-CL
The structure of the light chain of fusion protein R1740 from N-terminus to C-terminus is as follows: VL-CL
实施例2Example 2
非对称结构IL10单体融合蛋白的制备Preparation of asymmetric IL10 monomer fusion protein
通过常规方法构建、制备含目的基因的质粒。将含有目的基因的质粒通过与转染试剂PEI形成阳离子复合物后,导入到Expi293宿主细胞,质粒在细胞内期间,质粒上的外源基因在细胞内发生转录翻译,从而得到所述融合蛋白,具体实验操作如下:The plasmid containing the target gene is constructed and prepared by conventional methods. The plasmid containing the target gene is introduced into the Expi293 host cell after forming a cationic complex with the transfection reagent PEI. During the time when the plasmid is in the cell, the exogenous gene on the plasmid is transcribed and translated in the cell, thereby obtaining the fusion protein. The specific experimental operation is as follows:
Expi293宿主细胞在37℃、8%二氧化碳、130rpm条件培养,并在转染前通过细胞计数,将2E6的细胞接种至1L摇瓶中,培养体系约为300mL。配制转染复合物准备转染:首先将750μg目标质粒加入到含有15mLOpti-MEM试剂的50mL离心管中,轻轻混匀,标记为A管;将1.5mg转染试剂PEI加入到含有15mLOpti-MEM试剂的50mL离心管中,轻轻混匀后,室温孵育5min,标记为B管;将B管PEI稀释液逐滴加入到A管DNA稀释液中,轻轻混匀后,室温孵育15min,孵育结束后,将PEI-目标质粒复合物加入到Expi293细胞,置于37℃摇床中继续培养,培养至D5-D10后收样。 Expi293 host cells were cultured at 37°C, 8% carbon dioxide, and 130rpm. Before transfection, 2E6 cells were inoculated into a 1L shake flask by cell counting. The culture system was about 300mL. Prepare transfection complexes for transfection: First, add 750μg of target plasmid to a 50mL centrifuge tube containing 15mL Opti-MEM reagent, mix gently, and mark it as tube A; add 1.5mg of transfection reagent PEI to a 50mL centrifuge tube containing 15mL Opti-MEM reagent, mix gently, and incubate at room temperature for 5min, marked as tube B; add the PEI dilution in tube B dropwise to the DNA dilution in tube A, mix gently, and incubate at room temperature for 15min. After the incubation, add the PEI-target plasmid complex to Expi293 cells and continue to culture in a 37°C shaker. Collect samples after culturing to D5-D10.
瞬转细胞表达液经过9000rpm/20min离心,收集上清,再经过0.22μm滤膜除菌过滤。纯化采用ProA亲和层析。过程如下,使用AKTA avant 150层析设备,用至少5CV平衡缓冲液(10mM PBS)平衡层析柱(如MabSelectSuRe LX,GE),加载样品至层析柱,使目标蛋白吸附在层析柱上而其他杂质穿透分离。完成上样后使用至少5CV平衡缓冲液(10mM PBS)再次冲洗层析柱,随后使用洗脱缓冲液(20mM NaAc,pH=3.4)洗脱目标蛋白,收集管中预先加入中和缓冲液(1M Tris,pH=8.0),中和缓冲液的加入体积根据洗脱样品的预估含量而定,一般加入10%洗脱体积量。The transient cell expression solution was centrifuged at 9000rpm/20min, the supernatant was collected, and then sterilized and filtered through a 0.22μm filter membrane. ProA affinity chromatography was used for purification. The process is as follows: using an AKTA avant 150 chromatography device, the chromatography column (such as MabSelectSuRe LX, GE) was equilibrated with at least 5CV equilibration buffer (10mM PBS), and the sample was loaded onto the chromatography column so that the target protein was adsorbed on the chromatography column while other impurities penetrated and separated. After the sample is loaded, the chromatography column is rinsed again with at least 5CV equilibration buffer (10mM PBS), and then the target protein is eluted with elution buffer (20mM NaAc, pH=3.4). Neutralization buffer (1M Tris, pH=8.0) was pre-added to the collection tube. The volume of neutralization buffer added depends on the estimated content of the eluted sample, and generally 10% of the elution volume is added.
R0987具有两条相同的轻链和两条相同的重链,两条轻链的VL区与CL区之间各插入一条IL-10单体,其结构示意图如图4所示,其中一条轻链的氨基酸序列如SEQ ID NO:21所示:
R0987 has two identical light chains and two identical heavy chains, and an IL-10 monomer is inserted between the VL region and the CL region of each of the two light chains. Its structural schematic diagram is shown in FIG4 , wherein the amino acid sequence of one of the light chains is shown in SEQ ID NO: 21:
其中一条重链的氨基酸序列如SEQ ID NO:20所示:
The amino acid sequence of one heavy chain is shown in SEQ ID NO: 20:
R0989具有两条相同的重链,两条重链的CH2区与CH3区之间各插入一条IL-10单体,其结构示意图如图4所示,其中一条重链序列的氨基酸序列如SEQ ID NO:22所示:
R0989 has two identical heavy chains, with an IL-10 monomer inserted between the CH2 region and the CH3 region of each heavy chain. Its structural schematic diagram is shown in FIG4 , wherein the amino acid sequence of one heavy chain sequence is shown in SEQ ID NO: 22:
R0987具有两条相同的轻链,其中一条轻链的氨基酸序列如SEQ ID NO:23所示:
R0987 has two identical light chains, one of which has an amino acid sequence as shown in SEQ ID NO: 23:
部分融合蛋白表达数据如表1所示,一步亲和纯化后样品经SEC-HPLC检测,目标纯度在60%以上。样品经SDS-PAGE检测,显示正确的轻重链分布,并与SEC-HPLC检测结果一致,电泳图见图5。得出结论,R1737和R1738融合蛋白展现出良好的生产性质。The expression data of some fusion proteins are shown in Table 1. After one-step affinity purification, the samples were tested by SEC-HPLC, and the target purity was above 60%. The samples were tested by SDS-PAGE, showing the correct distribution of light and heavy chains, which was consistent with the results of SEC-HPLC test. The electrophoresis diagram is shown in Figure 5. It was concluded that the R1737 and R1738 fusion proteins showed good production properties.
表1
Table 1
实施例3Example 3
IL-10单体融合蛋白的体外活性In vitro activity of IL-10 monomer fusion protein
3.1流式法检测IL-10单体融合蛋白的抗体端、IL-10单体端的结合活性3.1 Flow cytometry to detect the binding activity of the antibody end and IL-10 monomer end of the IL-10 monomer fusion protein
用含3%BSA的PBS buffer将融合蛋白分子、R0674(IL10端阳性对照分子,由Fc区以及在其C端融合的IL10WT组成,其包括两条相同的肽链,其中一条肽链如下:Hinge-CH2-CH3-linker-IL10WT,其结构如图4所示,其氨基酸序列如SEQ ID NO:24所示,轻链氨基酸序列如SEQ ID NO:25所示)、R1049(其结构如图4所示,抗PD-1的单抗对照,其重链氨基酸序列如SEQ ID NO:26所示,轻链氨基酸序列如SEQ ID NO:27所示)、R0862(其结构如图4所示,即Isotype,阴性对照抗体;其重链氨基酸序列、轻链氨基酸序列如SEQ ID NO:28、29所示)稀释成初始浓度200nM,体积180μL,3倍梯度稀释(60样品μL+120μL稀释Buffer),10个浓度梯度点。将CHO-mPD1细胞(表达小鼠PD-1的CHO细胞)或者CHO-hIL10R细 胞(表达人IL10Rα的CHO细胞)离心350g/5min离心后弃去上清,用3%BSA的PBS buffer调整细胞密度为2E+06,按100μL/管均分到96孔V型板中;将上述稀释好的分子加入到细胞中,100μL/孔,2-8度孵育0.5h;取出96孔板,350g离心5min,小心去上清后,加入3%BSA的PBS buffer 200μL/孔,再次350g离心5min,小心去上清;用含3%BSA的PBS buffer配制PE荧光二抗(1:500稀释),按100μL/孔加入对于的96孔板中,重悬细胞,2-8度孵育30min;取出96孔板,250g离心5min,小心去上清后,加入含3%BSA的PBS buffer 200μL/孔,再次350g离心5min,小心去上清;用1xPBS 100μL/孔重悬,FACS检测。The fusion protein molecule, R0674 (IL10-terminal positive control molecule, composed of an Fc region and IL10WT fused at its C-terminus, which includes two identical peptide chains, one of which is as follows: Hinge-CH2-CH3-linker-IL10WT, whose structure is shown in FIG4 , whose amino acid sequence is shown in SEQ ID NO: 24, and whose light chain amino acid sequence is shown in SEQ ID NO: 25), R1049 (whose structure is shown in FIG4 , anti-PD-1 monoclonal antibody control, whose heavy chain amino acid sequence is shown in SEQ ID NO: 26, and whose light chain amino acid sequence is shown in SEQ ID NO: 27), and R0862 (whose structure is shown in FIG4 , i.e., Isotype, negative control antibody; whose heavy chain amino acid sequence and light chain amino acid sequence are shown in SEQ ID NO: 28 and 29) were diluted to an initial concentration of 200 nM, a volume of 180 μL, 3-fold gradient dilution (60 μL sample + 120 μL dilution buffer), and 10 concentration gradient points. CHO-mPD1 cells (CHO cells expressing mouse PD-1) or CHO-hIL10R cells The cells (CHO cells expressing human IL10Rα) were centrifuged at 350g/5min, the supernatant was discarded, the cell density was adjusted to 2E+06 with 3% BSA PBS buffer, and 100μL/tube was evenly distributed into 96-well V-shaped plates; the above-diluted molecules were added to the cells, 100μL/well, and incubated at 2-8 degrees for 0.5h; the 96-well plate was taken out, centrifuged at 350g for 5min, the supernatant was carefully removed, and 200μL/well of 3% BSA PBS buffer was added, and centrifuged at 350g for 5min again, and the supernatant was carefully removed; PE fluorescent secondary antibody (1:500 dilution) was prepared with PBS buffer containing 3% BSA, and 100μL/well was added to the corresponding 96-well plate, the cells were resuspended, and incubated at 2-8 degrees for 30min; the 96-well plate was taken out, centrifuged at 250g for 5min, the supernatant was carefully removed, and PBS buffer containing 3% BSA was added 200 μL/well, centrifuge again at 350g for 5 min, carefully remove the supernatant; resuspend with 100 μL/well of 1xPBS, and detect by FACS.
R0674的其中一条肽链的氨基酸序列:
The amino acid sequence of one of the peptide chains of R0674:
R1049的其中一条重链序列:
One of the heavy chain sequences of R1049:
R1049的其中一条轻链序列:
One of the light chain sequences of R1049:
R0862的其中一条重链序列:
One of the heavy chain sequences of R0862:
R0862的其中一条轻链序列:
One of the light chain sequences of R0862:
IL-10单体融合蛋白对IL-10Rα的结合活性检测结果见图6,R1738的IL-10端结合活性相较R0989和R1740均下降;R1737的IL-10端结合活性相较R0987和R1739均下降。The results of the IL-10 monomer fusion protein binding activity to IL-10Rα are shown in Figure 6. The IL-10 end binding activity of R1738 is decreased compared with R0989 and R1740; the IL-10 end binding activity of R1737 is decreased compared with R0987 and R1739.
IL-10单体融合蛋白抗体端的结合活性检测结果见图7,非对称结构IL10单体融合蛋白分子R1737的mPD1端结合活性相较R0987和R1739均没有太大变化,非对称结构IL10单体融合蛋白分子R1738的mPD1端结合活性相较R0989和R1740均没有太大变化。The results of the binding activity test of the antibody end of the IL-10 monomer fusion protein are shown in Figure 7. The mPD1 end binding activity of the asymmetric IL10 monomer fusion protein molecule R1737 did not change much compared with R0987 and R1739, and the mPD1 end binding activity of the asymmetric IL10 monomer fusion protein molecule R1738 did not change much compared with R0989 and R1740.
3.2融合蛋白的IL10端报告基因活性检测3.2 Detection of reporter gene activity of IL10 end of fusion protein
用DMEM将融合蛋白、R0674、R0579(IL-10-阳性抗体融合蛋白对照,其中所述IL-10去除了天然IL-10的前2个氨基酸,未插入间隔肽,其结构如图4其重链氨基酸序列如SEQ ID NO:30所示,其轻链氨基酸序列如SEQ ID NO:31所示)、R1187(不带靶向的IL10端阳性对照分子,由非PD1靶向抗体与IL10M融合而成,包括两条相同的重链和两条相同的轻链,两条轻链的C端均融合IL10M,其结构如图4所示,其重链氨基酸序列、轻链氨基酸序列如SEQ ID NO:32、33所示)稀释成初始浓度50nM,体积360μL,3倍梯度稀释(120μL样品+240μL稀释Buffer),6个浓度梯度点;细胞准备:取出正在培养的HEK293-hIL10报告基因细胞(吉满生物科技公司,货号为GM-C07927;该细胞系稳定表达IL10R及STAT3信号通路报告基因系统,使用IL10蛋白刺激,能够激活细胞荧光素酶表达上升)在显微镜下观察,细胞贴壁正常,颗粒透亮,且密度适中的细胞可以作为实验所用的效应细胞。The fusion proteins, R0674, R0579 (IL-10-positive antibody fusion protein control, in which the IL-10 is free of the first two amino acids of natural IL-10 and no spacer peptide is inserted, and its structure is shown in Figure 4. Its heavy chain amino acid sequence is shown in SEQ ID NO:30, and its light chain amino acid sequence is shown in SEQ ID NO:31), and R1187 (non-targeted IL10-positive control molecule, which is formed by fusion of non-PD1 targeting antibody and IL10M, including two identical heavy chains and two identical light chains, and the C-termini of the two light chains are fused with IL10M, and its structure is shown in Figure 4. Its heavy chain amino acid sequence, light chain amino acid sequence, Sequence as shown in SEQ ID NO:32, 33) was diluted to an initial concentration of 50nM, volume 360μL, 3-fold gradient dilution (120μL sample + 240μL dilution buffer), 6 concentration gradient points; Cell preparation: Take out the cultured HEK293-hIL10 reporter gene cells (Jiman Biotechnology Company, product number GM-C07927; this cell line stably expresses the IL10R and STAT3 signaling pathway reporter gene system, and the use of IL10 protein stimulation can activate the increase of cell luciferase expression) and observe under a microscope. The cells have normal cell adhesion, transparent particles, and cells with moderate density can be used as effector cells in the experiment.
将上述细胞用TE消化,终止消化后在350g/4min离心去上清,用1%FBS-PBS重悬后再清洗一遍;弃上清,最终使用培养基重悬细胞,细胞计数后调整细胞密度5E5/mL,按照每孔50μL铺板,之后置于37℃培养箱贴壁处理6h。将靶细胞R0326Fc-118细胞(稳定表达PD1,在该体系中发挥富集作用)离心350g/5min离心后弃去上清,用3%BSA的PBS buffer调整细胞密度为1E+06;在平底板中配制反应体系(1.富集体系:按照实验设计先将稀释好的融合蛋白以25μL/孔的体积与靶细胞R0326Fc-118等体积混合后,共孵育约30min,之后将靶细胞R0326与Ab一起小心转入到贴壁处理的HEK293-hIL10报告基因细胞中;在Medium only的孔里加100ΜI Assay Buffer,Cell only的孔中补加25μL的Assay Buffer,最终所有孔的终体积为100μL, 边缘孔用200μL的无菌水封上,将96孔板继续在培养箱中培养16h;2.无富集体系:不加靶细胞(R0326Fc-118),即直接往贴壁处理好的细胞中加入对应抗体;其他操作同富集体系)。提前解冻Bright-LumiTM萤火虫荧光素酶检测试剂,平衡至室温。细胞培养到时间点后取出细胞培养板平衡至室温10min(不宜超过30min)。每孔加入100μL Bright-LumiTM萤火虫荧光素酶检测试剂,室温孵育5-10min。将反应结束的体系,每孔取100μL至96孔全白板中;多功能酶标仪,使用化学发光模式检测信号。The above cells were digested with TE, centrifuged at 350g/4min after digestion, and the supernatant was removed. The cells were resuspended with 1% FBS-PBS and washed again. The supernatant was discarded, and the cells were finally resuspended with culture medium. After cell counting, the cell density was adjusted to 5E5/mL, and 50 μL was plated per well, and then placed in a 37°C incubator for adhesion treatment for 6 hours. The target cells R0326Fc-118 cells (stable expression of PD1, which plays an enrichment role in this system) were centrifuged at 350g/5min, and the supernatant was discarded. The cell density was adjusted to 1E+06 with 3% BSA PBS buffer; the reaction system was prepared in a flat-bottom plate ( 1. Enrichment system: According to the experimental design, the diluted fusion protein was first mixed with the target cells R0326Fc-118 in an equal volume at a volume of 25μL/well, and incubated for about 30min. Then, the target cells R0326 and Ab were carefully transferred into the adherent HEK293-hIL10 reporter gene cells; 100ΜI Assay Buffer was added to the Medium only wells, and 25μL Assay Buffer was added to the Cell only wells. The final volume of all wells was 100μL, The edge wells were sealed with 200 μL of sterile water, and the 96-well plate was continued to be cultured in the incubator for 16 hours; 2. Non-enrichment system: no target cells (R0326Fc-118) were added, that is, the corresponding antibody was directly added to the cells that had been treated for adhesion; other operations were the same as the enrichment system). The Bright-LumiTM firefly luciferase detection reagent was thawed in advance and equilibrated to room temperature. After the cells were cultured to the time point, the cell culture plate was taken out and equilibrated to room temperature for 10 minutes (not more than 30 minutes). 100 μL of Bright-LumiTM firefly luciferase detection reagent was added to each well and incubated at room temperature for 5-10 minutes. 100 μL of the system after the reaction was completed was taken from each well to the 96-well all-white plate; the multi-function microplate reader was used to detect the signal in chemiluminescence mode.
R0579的其中一条重链序列:
One of the heavy chain sequences of R0579:
R0579的其中一条轻链序列:
One of the light chain sequences of R0579:
R1187的重链从N端到C端的结构为VH-CH1-Hinge-CH2-CH3,其氨基酸序列如下:
The structure of the heavy chain of R1187 from N-terminus to C-terminus is VH-CH1-Hinge-CH2-CH3, and its amino acid sequence is as follows:
R1187的轻链从N端到C端的结构为VL-CL-L5-IL10,其氨基酸序列如下:
The structure of the light chain of R1187 from N-terminus to C-terminus is VL-CL-L5-IL10, and its amino acid sequence is as follows:
检测结果见图8,对照分子在富集前、后的报告基因信号值无较大改变;而R1738和R1737在有靶细胞的富集体系中报告基因信号值均有所提升;其中,非对称结构IL-10单体融合蛋白R1738在无抗体靶细胞的体系中无信号值,在含抗体靶细胞的富集体系中信号值明显提升,说明本公开实施例提供的R1738和R1737融合蛋白分子在缺乏抗体靶细胞的情况下不会产生IL-10的生物学活性,具有低副作用的特点,可以具有更大的给药剂量。The detection results are shown in Figure 8. There is no significant change in the reporter gene signal value of the control molecule before and after enrichment; while the reporter gene signal values of R1738 and R1737 are both improved in the enrichment system with target cells; among them, the asymmetric structure IL-10 monomer fusion protein R1738 has no signal value in the system without antibody target cells, and the signal value is significantly improved in the enrichment system containing antibody target cells, indicating that the R1738 and R1737 fusion protein molecules provided in the embodiments of the present disclosure will not produce the biological activity of IL-10 in the absence of antibody target cells, have the characteristics of low side effects, and can have a larger dosage.
实施例4Example 4
采用ELISA法检测各IL10融合蛋白与IL10Rα结合的活性ELISA was used to detect the binding activity of each IL10 fusion protein with IL10Rα
将抗原IL10Rα(IL10Rα-his)稀释成1μg/mL(稀释液:50mM CB),按照100μL/孔加入96孔酶标板,用封板膜封住,4℃冰箱静置过夜;第二天用1×PBST清洗3次并拍干,按照200μL/孔加入assay buffer(1%BSA),室温封闭1.5h;用1×PBST清洗1次并拍干,按照100μL/孔加入assay buffer稀释后的待测抗体(60nM起始,3倍稀释11个浓度点),用封板膜封住,室温振荡(500rpm)孵育1.5h;用1×PBST清洗板条5次并拍干,按照100μL/孔加入assay buffer稀释后的GAH-IgG Fc HRP(1:10K),用封板膜封住,室温孵育40min;用1×PBST清洗板条6次并拍干,按照100μL/孔加入TMB显色液,室温孵育5-10min;按照100μL/孔加入终止液,于450nm&630nm处读板,用SoftMax Pro分析数据。Antigen IL10Rα (IL10Rα-his) was diluted to 1 μg/mL (diluent: 50 mM CB), added to a 96-well ELISA plate at 100 μL/well, sealed with a sealing film, and left to stand overnight in a 4°C refrigerator; the next day, the plate was washed three times with 1×PBST and patted dry, and assay buffer (1% BSA) was added at 200 μL/well, and blocked at room temperature for 1.5 h; the plate was washed once with 1×PBST and patted dry, and the antibody to be tested (starting at 60 nM, 3-fold dilution at 11 concentration points) was added at 100 μL/well, and the plate was then washed ... Seal the plate with sealing film and incubate at room temperature with shaking (500 rpm) for 1.5 h; wash the plate with 1×PBST 5 times and pat dry, add GAH-IgG Fc HRP (1:10K) diluted in assay buffer at 100 μL/well, seal the plate with sealing film, and incubate at room temperature for 40 min; wash the plate with 1×PBST 6 times and pat dry, add TMB colorimetric solution at 100 μL/well, incubate at room temperature for 5-10 min; add stop solution at 100 μL/well, read the plate at 450 nm & 630 nm, and analyze the data with SoftMax Pro.
结合活性检测结果见图9(图中“Span”表示高平台和低平台的差值,数值越大说明窗口比较大,检测灵敏度高);可以看出,R1737、R1738、R1739对IL10Rα的结合活性分别较改造前的对照分子(R0987、R0989、R0991)降低较多。说明IL10单体插入R1737、R1738、R1739所示位置减弱了IL10单体对IL10Rα的结合活性。The results of binding activity detection are shown in Figure 9 ("Span" in the figure indicates the difference between the high platform and the low platform. The larger the value, the larger the window and the higher the detection sensitivity); it can be seen that the binding activity of R1737, R1738, and R1739 to IL10Rα is significantly lower than that of the control molecules (R0987, R0989, and R0991) before modification. This indicates that the insertion of IL10 monomers into the positions shown by R1737, R1738, and R1739 weakens the binding activity of IL10 monomers to IL10Rα.
实施例5Example 5
采用ELISA法检测各IL10融合蛋白与IL10Rβ结合的活性ELISA was used to detect the binding activity of each IL10 fusion protein with IL10Rβ
将抗体His-Tag Mouse mAb稀释成1μg/mL(稀释液:50mM CB),按照100μL/孔加入96孔酶标板,用封板膜封住,4℃冰箱静置过夜;第二天用1×PBST清洗3次并拍干,按照200μL/孔加入assay buffer(1%BSA),室温封闭1.5h;用1×PBST清洗1次并拍干,按照100μL/孔加入assay buffer稀释后的抗原R2050(IL10β-his,1μg/mL),用封板膜封住,室温振荡(500rpm)孵育1h;用1×PBST清洗5次并拍干,按照100μL/孔加入assay buffer稀释后的待测抗体(60nM起始,3倍稀释11个浓度点),用封板膜封住,室温振荡(500rpm)孵育1.5h;用1×PBST清洗板条5次并拍干,按照100μL/孔加入assay buffer稀释后的 GAH-IgG Fc HRP(1:10K),用封板膜封住,室温孵育40min;用1×PBST清洗板条6次并拍干,按照100μL/孔加入TMB显色液,室温孵育20-30min;按照100μL/孔加入终止液,于450nm&630nm处读板,SoftMax Pro分析数据。The antibody His-Tag Mouse mAb was diluted to 1 μg/mL (diluent: 50 mM CB), added to a 96-well ELISA plate at 100 μL/well, sealed with a sealing film, and left to stand overnight in a 4°C refrigerator; the next day, the plate was washed 3 times with 1×PBST and patted dry, and assay buffer (1% BSA) was added at 200 μL/well, and blocked at room temperature for 1.5 h; the plate was washed once with 1×PBST and patted dry, and antigen R2050 (IL10β-his, 1 μg/mL) diluted in assay buffer was added at 100 μL/well, sealed with a sealing film, and incubated at room temperature with shaking (500 rpm) for 1 h; the plate was washed 5 times with 1×PBST and patted dry, and assay buffer was added at 100 μL/well. The antibody to be tested was diluted with the assay buffer (starting at 60 nM, 3-fold dilution to 11 concentration points), sealed with a sealing film, and incubated at room temperature with shaking (500 rpm) for 1.5 h; the plate was washed 5 times with 1× PBST and patted dry, and 100 μL/well of the diluted antibody was added with the assay buffer GAH-IgG Fc HRP (1:10K), sealed with sealing film, incubated at room temperature for 40 minutes; washed the strips with 1×PBST 6 times and patted dry, added TMB colorimetric solution at 100μL/well, incubated at room temperature for 20-30 minutes; added stop solution at 100μL/well, read the plate at 450nm&630nm, and analyzed the data with SoftMax Pro.
结合活性检测结果见图10;可以看出,R1737、R1738、R1739对IL10Rβ的结合活性分别较改造前的对照分子(R0987、R0989)降低较多。说明IL10单体插入R1737、R1738所示位置减弱了IL10单体对IL10Rβ的结合活性。The results of the binding activity test are shown in Figure 10; it can be seen that the binding activity of R1737, R1738, and R1739 to IL10Rβ is significantly lower than that of the control molecules (R0987 and R0989) before modification, indicating that the insertion of IL10 monomers into the positions indicated by R1737 and R1738 weakens the binding activity of IL10 monomers to IL10Rβ.
实施例6Example 6
PD1采用ELISA法检测各IL10融合蛋白与IL10Rα/IL10Rβ结合的活性PD1 ELISA was used to detect the binding activity of each IL10 fusion protein with IL10Rα/IL10Rβ
将抗原R2051-E7(IL10Rα/IL10Rβ-hFc)稀释成1μg/mL(稀释液:50mM CB),按照100μL/孔加入96孔酶标板,用封板膜封住,4℃冰箱静置过夜;第二天用1×PBST清洗3次并拍干,按照200μL/孔加入assay buffer(1%BSA),室温封闭1.5h;用1×PBST清洗1次并拍干,按照100μL/孔加入assay buffer稀释后的待测抗体(60nM起始,3倍稀释11个浓度点),用封板膜封住,室温振荡(500rpm)孵育1.5h;用1×PBST清洗板条5次并拍干,按照100μL/孔加入assay buffer稀释后的mPD1-His(1μg/mL),用封板膜封住,室温孵育1h;用1×PBST清洗板条5次并拍干,按照100μL/孔加入assay buffer稀释后的anti-his HRP(1:5K),用封板膜封住,室温孵育40min;用1×PBST清洗板条6次并拍干,按照100μL/孔加入TMB显色液,室温孵育10-15min;按照100μL/孔加入终止液,于450nm&630nm处读板,SoftMax Pro分析数据。Antigen R2051-E7 (IL10Rα/IL10Rβ-hFc) was diluted to 1 μg/mL (diluent: 50 mM CB), added to a 96-well ELISA plate at 100 μL/well, sealed with a sealing film, and allowed to stand overnight in a 4°C refrigerator; the next day, the plate was washed three times with 1×PBST and patted dry, and assay buffer (1% BSA) was added at 200 μL/well, and blocked at room temperature for 1.5 h; the plate was washed once with 1×PBST and patted dry, and the antibody to be tested diluted in assay buffer (60 nM starting point, 3-fold dilution to 11 concentration points) was added at 100 μL/well, sealed with a sealing film, and incubated at room temperature with shaking (500 rpm) for 1.5 h; the plate was washed with 1×PBS The plates were washed 5 times with 1×PBST and patted dry, and mPD1-His (1μg/mL) diluted in assay buffer was added at 100μL/well, the plates were sealed with a sealing film, and incubated at room temperature for 1h; the plates were washed 5 times with 1×PBST and patted dry, and anti-his HRP (1:5K) diluted in assay buffer was added at 100μL/well, the plates were sealed with a sealing film, and incubated at room temperature for 40min; the plates were washed 6 times with 1×PBST and patted dry, and TMB colorimetric solution was added at 100μL/well, and incubated at room temperature for 10-15min; stop solution was added at 100μL/well, the plates were read at 450nm & 630nm, and data were analyzed with SoftMax Pro.
结合活性检测结果见图11;可以看出,R1737、R1738对IL10Rα/IL10Rβ的结合活性分别较改造前的对照分子(R0987、R0989)降低较多。说明IL10单体插入R1737、R1738所示位置减弱了IL10单体对IL10Rα/IL10Rβ的结合活性。The results of the binding activity test are shown in Figure 11; it can be seen that the binding activity of R1737 and R1738 to IL10Rα/IL10Rβ is significantly lower than that of the control molecules (R0987 and R0989) before modification, indicating that the insertion of IL10 monomers into the positions shown by R1737 and R1738 weakens the binding activity of IL10 monomers to IL10Rα/IL10Rβ.
以上所述仅为本公开的可选的实施例而已,并不用于限制本公开,对于本领域的技术人员来说,本公开可以有各种更改和变化。凡在本公开的精神和原则之内,所作的任何修改、等同替换、改进等,均应包含在本公开的保护范围之内。 The above description is only an optional embodiment of the present disclosure and is not intended to limit the present disclosure. For those skilled in the art, the present disclosure may have various modifications and variations. Any modification, equivalent replacement, improvement, etc. made within the spirit and principle of the present disclosure shall be included in the protection scope of the present disclosure.

Claims (23)

  1. 一种融合蛋白,其特征在于,其包含:抗体,和插入在所述抗体中的白细胞介素单体或其变体;A fusion protein, characterized in that it comprises: an antibody, and an interleukin monomer or a variant thereof inserted into the antibody;
    所述抗体为免疫球蛋白,其具有两条相同的轻链和两条相同的重链,所述轻链包括VL区和CL区,所述重链包括VH区、CH1区、CH2区、和CH3区;所述白细胞介素单体或其变体插入至所述抗体的位置为如下(i)或(ii):The antibody is an immunoglobulin having two identical light chains and two identical heavy chains, wherein the light chain comprises a VL region and a CL region, and the heavy chain comprises a VH region, a CH1 region, a CH2 region, and a CH3 region; the position where the interleukin monomer or a variant thereof is inserted into the antibody is as follows (i) or (ii):
    (i)所述白细胞介素单体或其变体插入至所述抗体的其中一条重链的CH2区和CH3区之间;(i) the interleukin monomer or variant thereof is inserted between the CH2 region and the CH3 region of one of the heavy chains of the antibody;
    (ii)所述白细胞介素单体或其变体插入至所述抗体的其中一条轻链的VL区和CL区之间。(ii) the interleukin monomer or variant thereof is inserted between the VL region and the CL region of one of the light chains of the antibody.
  2. 根据权利要求1所述的融合蛋白,其特征在于,所述白细胞介素单体或其变体插入至所述抗体的位置为(i);所述抗体的重链包含防止重链错配的修饰。The fusion protein according to claim 1, characterized in that the position where the interleukin monomer or its variant is inserted into the antibody is (i); and the heavy chain of the antibody comprises a modification that prevents heavy chain mispairing.
  3. 根据权利要求2所述的融合蛋白,其特征在于,所述抗体的一条重链的CH3区含有Knob结构域,所述抗体的另一条重链的CH3区含有Hole结构域,所述Knob结构域与所述Hole结构域配对形成重链防错配结构。The fusion protein according to claim 2 is characterized in that the CH3 region of one heavy chain of the antibody contains a Knob domain, the CH3 region of the other heavy chain of the antibody contains a Hole domain, and the Knob domain and the Hole domain are paired to form a heavy chain anti-mispairing structure.
  4. 根据权利要求3所述的融合蛋白,其特征在于,根据EU编号系统,含有Knob结构域的重链的CH3区包含氨基酸突变:T366W、K392D和K409D,含有Hole结构域的重链的CH3区包含氨基酸突变:L368R、D399K和Y407A。The fusion protein according to claim 3 is characterized in that, according to the EU numbering system, the CH3 region of the heavy chain containing the Knob domain comprises the amino acid mutations: T366W, K392D and K409D, and the CH3 region of the heavy chain containing the Hole domain comprises the amino acid mutations: L368R, D399K and Y407A.
  5. 根据权利要求4所述的融合蛋白,其特征在于,所述白细胞介素单体或其变体插入至含有Knob结构域的重链上;The fusion protein according to claim 4, characterized in that the interleukin monomer or its variant is inserted into a heavy chain containing a Knob domain;
    可选地,所述白细胞介素单体或其变体与所述抗体的含有Knob结构域的重链通过第一连接肽连接。Optionally, the interleukin monomer or variant thereof is connected to the heavy chain containing the Knob domain of the antibody via a first connecting peptide.
  6. 根据权利要求3-5任一项所述的融合蛋白,其特征在于,所述白细胞介素单体或其变体的N末端与所述抗体的含有Knob结构域的重链的CH2区的C末端通过第一连接肽连接,所述白细胞介素单体或其变体的C末端与所述抗体的含有Knob结构域的重链的CH3区的N末端通过第一连接肽连接;The fusion protein according to any one of claims 3 to 5, characterized in that the N-terminus of the interleukin monomer or variant thereof is connected to the C-terminus of the CH2 region of the heavy chain containing the Knob domain of the antibody via a first connecting peptide, and the C-terminus of the interleukin monomer or variant thereof is connected to the N-terminus of the CH3 region of the heavy chain containing the Knob domain of the antibody via a first connecting peptide;
    可选地,所述抗体的含有Knob结构域的重链从N端到C端的结构如下:VH-CH1-hinge-CH2-L1-Int-L1-CH3,其中,L1代表:第一连接肽,Int代表:白细胞介素单体或其变体;Optionally, the structure of the heavy chain containing the Knob domain of the antibody from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-L1-Int-L1-CH3, wherein L1 represents: the first connecting peptide, and Int represents: an interleukin monomer or a variant thereof;
    所述抗体的含有Hole结构域的重链从N端到C端的结构如下:VH-CH1-hinge-CH2-CH3;The structure of the heavy chain containing the Hole domain of the antibody from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3;
    所述抗体的轻链从N端到C端的结构如下:VL-CL。The structure of the light chain of the antibody from N-terminus to C-terminus is as follows: VL-CL.
  7. 根据权利要求5或6所述的融合蛋白,其特征在于,所述第一连接肽具有SEQ ID NO:6所示的氨基酸序列。The fusion protein according to claim 5 or 6 is characterized in that the first connecting peptide has an amino acid sequence shown in SEQ ID NO:6.
  8. 根据权利要求1所述的融合蛋白,其特征在于,所述白细胞介素单体或其变体插入至所述抗体的位置为(ii);所述抗体包含防止轻链错配的修饰和防止重链错配的修饰。The fusion protein according to claim 1, characterized in that the position where the interleukin monomer or its variant is inserted into the antibody is (ii); and the antibody comprises a modification that prevents light chain mispairing and a modification that prevents heavy chain mispairing.
  9. 根据权利要求8所述的融合蛋白,其特征在于,所述抗体的一条轻链的CL区被Obscurin结构域替换,所述抗体的一条重链的CH1区被Titin结构域替换,所述Obscurin结构域与所述Titin结构域配对形成轻链防错配结构;The fusion protein according to claim 8, characterized in that the CL region of one light chain of the antibody is replaced by the Obscurin domain, the CH1 region of one heavy chain of the antibody is replaced by the Titin domain, and the Obscurin domain is paired with the Titin domain to form a light chain anti-mismatching structure;
    所述抗体的含Titin结构域的重链的CH3区含有Knob结构域,所述抗体的另一条重链的CH3区含有Hole结构域,所述Knob结构域与所述Hole结构域配对形成重链防错配结构。The CH3 region of the heavy chain containing the titin domain of the antibody contains a Knob domain, and the CH3 region of the other heavy chain of the antibody contains a Hole domain. The Knob domain is paired with the Hole domain to form a heavy chain anti-mismatching structure.
  10. 根据权利要求9所述的融合蛋白,其特征在于,所述Obscurin结构域具有如SEQ ID NO:10所示的氨基酸序列,所述Titin结构域具有如SEQ ID NO:11所示的氨基酸序列;The fusion protein according to claim 9, characterized in that the Obscurin domain has an amino acid sequence as shown in SEQ ID NO: 10, and the Titin domain has an amino acid sequence as shown in SEQ ID NO: 11;
    可选地,根据EU编号系统,所述含有Knob结构域的重链的CH3区包含氨基酸突变:T366W、K392D和K409D,所述含有Hole结构域的重链的CH3区包含氨基酸突变:L368R、D399K和Y407A。Optionally, according to the EU numbering system, the CH3 region of the heavy chain containing the Knob domain comprises the amino acid mutations: T366W, K392D and K409D, and the CH3 region of the heavy chain containing the Hole domain comprises the amino acid mutations: L368R, D399K and Y407A.
  11. 根据权利要求9或10所述的融合蛋白,其特征在于,所述白细胞介素单体或其变体插入至含Obscurin结构域的轻链上;The fusion protein according to claim 9 or 10, characterized in that the interleukin monomer or variant thereof is inserted into a light chain containing an obscurin domain;
    可选地,所述白细胞介素单体或其变体与所述抗体的轻链的Obscurin结构域通过第三连接肽连接;所述抗体的Titin结构域与VH区通过第二连接肽连接。Optionally, the interleukin monomer or variant thereof is connected to the Obscurin domain of the light chain of the antibody via a third connecting peptide; and the Titin domain of the antibody is connected to the VH region via a second connecting peptide.
  12. 根据权利要求9-11任一项所述的融合蛋白,其特征在于,所述白细胞介素单体或其变体的N末端与所述抗体的含有Obscurin结构域的轻链的VL区的C末端通过第一连接肽连接,所述白细胞介素单体或其变体的C末端与所述抗体的轻链的Obscurin结构域的N末端通过第三连接肽连接;所述Titin结构域的N末端与VH的C末端通过第二连接肽连接;The fusion protein according to any one of claims 9 to 11, characterized in that the N terminus of the interleukin monomer or variant thereof is connected to the C terminus of the VL region of the light chain containing the Obscurin domain of the antibody via a first connecting peptide, and the C terminus of the interleukin monomer or variant thereof is connected to the N terminus of the Obscurin domain of the light chain of the antibody via a third connecting peptide; the N terminus of the Titin domain is connected to the C terminus of the VH via a second connecting peptide;
    可选地,所述抗体的含有Obscurin结构域的轻链从N端到C端的结构如下:VL-L1-Int-L3-Obs,其中,L1代表:第一连接肽,L3代表:第三连接肽,Int代表:白细胞介素单体或其变体,Obs代表:Obscurin结构域;Optionally, the structure of the Obscurin domain-containing light chain of the antibody from N-terminus to C-terminus is as follows: VL-L1-Int-L3-Obs, wherein L1 represents: the first connecting peptide, L3 represents: the third connecting peptide, Int represents: an interleukin monomer or a variant thereof, and Obs represents: an Obscurin domain;
    所述抗体的不含Obscurin结构域的轻链从N端到C端的结构如下:VL-CL;The structure of the light chain of the antibody without the Obscurin domain from N-terminus to C-terminus is as follows: VL-CL;
    所述抗体的含有Titin结构域和Knob结构域的重链从N端到C端的结构如下:VH-L2-Tit-CH2-CH3,其中,L2代表:第二连接肽,Tit代表:Titin结构域;The structure of the heavy chain of the antibody containing the titin domain and the knob domain from the N-terminus to the C-terminus is as follows: VH-L2-Tit-CH2-CH3, wherein L2 represents: the second connecting peptide, and Tit represents: the titin domain;
    所述抗体的含有Hole结构域的重链从N端到C端的结构如下:VH-CH1-hinge-CH2-CH3。The structure of the heavy chain containing the Hole domain of the antibody from N-terminus to C-terminus is as follows: VH-CH1-hinge-CH2-CH3.
  13. 根据权利要求11或12所述的融合蛋白,其特征在于,所述第二连接肽具有如SEQ ID NO:12所示的氨基酸序列,所述第三连接肽具有如SEQ ID NO:13所示的氨基酸序列。The fusion protein according to claim 11 or 12 is characterized in that the second connecting peptide has an amino acid sequence as shown in SEQ ID NO: 12, and the third connecting peptide has an amino acid sequence as shown in SEQ ID NO: 13.
  14. 根据权利要求1-13任一项所述的融合蛋白,其特征在于,所述白细胞介素单体选自IL-10单体、IL-5单体、IL-12单体、IL-23单体、IL-25单体、IL-27单体、和IL-35单体;The fusion protein according to any one of claims 1 to 13, characterized in that the interleukin monomer is selected from IL-10 monomer, IL-5 monomer, IL-12 monomer, IL-23 monomer, IL-25 monomer, IL-27 monomer, and IL-35 monomer;
    优选地,所述白细胞介素单体为IL-10单体。 Preferably, the interleukin monomer is an IL-10 monomer.
  15. 根据权利要求14所述的融合蛋白,其特征在于,所述IL-10单体为天然IL-10单体或修饰后的IL-10单体;The fusion protein according to claim 14, characterized in that the IL-10 monomer is a natural IL-10 monomer or a modified IL-10 monomer;
    优选地,所述天然IL-10单体具有如SEQ ID NO:3所示的氨基酸序列;Preferably, the natural IL-10 monomer has an amino acid sequence as shown in SEQ ID NO: 3;
    优选地,所述修饰后的IL-10单体在天然IL-10单体分子序列的其中两个氨基酸位点之间插入一段间隔肽;Preferably, the modified IL-10 monomer has a spacer peptide inserted between two amino acid sites in the natural IL-10 monomer molecule sequence;
    优选地,所述修饰后的IL-10单体在天然IL-10单体分子序列的116N、117K两个位点之间插入一段间隔肽;Preferably, the modified IL-10 monomer has a spacer peptide inserted between the two sites 116N and 117K of the natural IL-10 monomer molecular sequence;
    优选地,所述间隔肽包含SEQ ID NO:4所示的氨基酸序列;Preferably, the spacer peptide comprises the amino acid sequence shown in SEQ ID NO:4;
    优选地,所述修饰后的IL-10单体缺失了天然IL-10单体分子序列的N末端的前2个氨基酸;Preferably, the modified IL-10 monomer lacks the first two amino acids at the N-terminus of the natural IL-10 monomer molecule sequence;
    优选地,所述修饰后的IL-10单体具有如SEQ ID NO:5所示的氨基酸序列。Preferably, the modified IL-10 monomer has an amino acid sequence as shown in SEQ ID NO:5.
  16. 根据权利要求1-15任一项所述的融合蛋白,其特征在于,所述抗体特异性结合免疫检查点和/或肿瘤抗原;The fusion protein according to any one of claims 1 to 15, characterized in that the antibody specifically binds to immune checkpoints and/or tumor antigens;
    优选地,所述免疫检查点分子选自PD-1、CD47、TIGIT、CD137、CD134、KIR、LAG-3、PD-L1、CTLA-4、B7.1、B7H3、CCRY、OX-40和CD40;Preferably, the immune checkpoint molecule is selected from PD-1, CD47, TIGIT, CD137, CD134, KIR, LAG-3, PD-L1, CTLA-4, B7.1, B7H3, CCRY, OX-40 and CD40;
    优选地,所述肿瘤抗原选自GUCY2C、MSLN、Claudin18.2、GPC3、EGFR、HER2、CEA、GD2、EGFRⅧ、MUC1、PRLR、CLCA1、MUC12、GPR35、CR1L、MUC17、TMPRSS11B、MUC21、TMPRSS1IE、CD207、SLC30A8、CFC1、SLC12A3、SSTR1、GPR27、FZD10、TSHR、SIGLEC15、SLC6A3、KISSIR、QRFPR、GPR119、CLDN6、UPK2、ADAM12、SLC45A3、ACPP、MUC21、MUC16、MS4A12、ALPP、EphA2、FAP、IL13-Ra2、PSMA、ROR1、VEGFR-Ⅱ、FR-a、EpCAM、EGFRⅦ、tMUC1、PSCA、FCER2、GPR18、FCRLA、CXCR5、FCRL3、FCRL2、HTR3A、CLEC17A、TRPMI、SLC45A2、SLC24A5、DPEP3、KCNK16、LIM2,KCNV2、SLC26A4、CD171、Glypican-3、IL-13、CD79a/b和MAGEA4;Preferably, the tumor antigen is selected from GUCY2C, MSLN, Claudin18.2, GPC3, EGFR, HER2, CEA, GD2, EGFRⅧ, MUC1, PRLR, CLCA1, MUC12, GPR35, CR1L, MUC17, TMPRSS11B, MUC21, TMPRSS1IE, CD207, SLC30A8, CFC1, SLC12A3, SSTR1, GPR27, FZD10, TSHR, SIGLEC15, SLC6A3, KISSIR, QRFPR, GPR119, CLDN6, UPK2, ADAM12, SLC45 A3, ACPP, MUC21, MUC16, MS4A12, ALPP, EphA2, FAP, IL13-Ra2, PSMA, ROR1, VEGFR-Ⅱ, FR-a, EpCAM, EGFRⅦ, tMUC1, PSCA, FCER2, GPR18, FCRLA, CXCR5, FCRL3, FCRL2, HTR3A, CLEC17A, TRPMI, SLC45A2, SLC24A5, DPEP3, KCNK16, LIM2, KCNV2, SLC26A4, CD171, Glypican-3, IL-13, CD79a/b, and MAGEA4;
    优选地,所述抗体特异性结合PD-1。Preferably, the antibody specifically binds to PD-1.
  17. 一种多特异性结合分子,其特征在于,所述多特异性结合分子包括权利要求1-16任一项所述的融合蛋白。A multispecific binding molecule, characterized in that the multispecific binding molecule comprises the fusion protein according to any one of claims 1-16.
  18. 一种核酸,其特征在于,所述核酸编码权利要求1-16任一项所述的融合蛋白或权利要求17所述的多特异性结合分子。A nucleic acid, characterized in that the nucleic acid encodes the fusion protein according to any one of claims 1 to 16 or the multispecific binding molecule according to claim 17.
  19. 一种表达载体,其特征在于,所述表达载体包含权利要求18所述的核酸。An expression vector, characterized in that the expression vector comprises the nucleic acid according to claim 18.
  20. 一种重组细胞,其特征在于,所述重组细胞携带权利要求18所述的核酸、权利要求19所述的表达载体、表达权利要求1-16任一项所述的融合蛋白或表达权利要求17所述的多特异性结合分子。A recombinant cell, characterized in that the recombinant cell carries the nucleic acid of claim 18, the expression vector of claim 19, expresses the fusion protein of any one of claims 1-16, or expresses the multi-specific binding molecule of claim 17.
  21. 权利要求1-16任一项所述的融合蛋白、权利要求17所述的多特异性结合分子、权利要求18所述的核酸、权利要求19所述的表达载体或权利要求20所述的重组细胞在制备药物中的用途,所述药物用于治疗或预防肿瘤或炎性疾病。Use of the fusion protein of any one of claims 1 to 16, the multispecific binding molecule of claim 17, the nucleic acid of claim 18, the expression vector of claim 19 or the recombinant cell of claim 20 in the preparation of a medicament for treating or preventing a tumor or an inflammatory disease.
  22. 一种药物组合物,其特征在于,包含权利要求1-16任一项所述的融合蛋白、权利要求17所述的多特异性结合分子、权利要求18所述的核酸、权利要求19所述的表达载体或权利要求20所述的重组细胞;A pharmaceutical composition, characterized in that it comprises the fusion protein of any one of claims 1 to 16, the multispecific binding molecule of claim 17, the nucleic acid of claim 18, the expression vector of claim 19 or the recombinant cell of claim 20;
    可选地,所述药物组合物还包括药学上可接受的载体。Optionally, the pharmaceutical composition further comprises a pharmaceutically acceptable carrier.
  23. 一种治疗、预防或诊断肿瘤或炎性疾病、病症或状况的方法,其特征在于,其包括向受试者施用治疗有效量的如权利要求22所述的药物组合物。 A method for treating, preventing or diagnosing a tumor or inflammatory disease, disorder or condition, comprising administering to a subject a therapeutically effective amount of the pharmaceutical composition of claim 22.
PCT/CN2023/140374 2022-12-21 2023-12-20 Il-10 monomer fusion protein WO2024131864A1 (en)

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