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Definitions

• Helianthinin is an IIS seed storage protein of sunflower embryos.
• the present invention is directed to the 5' regulatory regions of helianthinin genes. More particularly, the present invention is directed to specific cis-regulatory elements of this regulatory region which direct tissue-specific, temporally-regulated, or abscisic acid-responsive gene expression.
• the present invention provides chimeric genes comprising the cis-regulatory elements linked to a coding sequence from a heterologous gene to control expression of these genes.
• the chimeric genes provided by the instant invention are useful in conferring herbicide resistance and improved seed lipid quality to transgenic plants.
• Seed development unique to higher plants, involves embryo development as well as physiological adaptation processes that occur within the seed to ensure the survival of the developing seedling upon germination. After fertilization, there is rapid growth and differentiation of the embryo and endosperm, after which nutritive reserves accumulate during the maturation stage of seed development. These reserves are stored during a period of developmental arrest for later use by the developing seedling. This period of arrest occurs prior to the desiccation phase of seed development.
• seed proteins including storage proteins, lectins, and trypsin inhibitors, accumulate during embryogenesis.
• the main function of seed storage proteins is to accumulate during embryogenesis and to store carbon and nitrogen reserves for the developing seedling upon germination.
• These proteins, as well as many of the genes encoding them, have been studied extensively (for review see Shotwell et al. (1989) in The Biochemistry of Plants, 15, Academic Press, NY, 297).
• Genes encoding seed storage proteins are highly regulated and differentially expressed during seed development. Expression is temporally regulated with mRNA accumulatin rapidly during the maturation phase of embryogenesis. This expression is also tissue-specific, occurring primarily in the cotyledons or endosperm of the developing seeds.
• the resulting storage proteins are processed and targeted to protein bodies, in which the storage proteins remain during desiccation and dormancy of the embryo. Upon germination, the seedling uses these storage proteins as a source of carbon and nitrogen (Higgins (1984) Ann. Rev. Plant Physiol. 35, 191).
• Seed proteins including storage proteins, lectins and trypsin inhibitors, are encoded by nonhomologous multigene families that are not amplified or structurally altered during development (for review see Goldberg et al. (1989) Cell 56, 149). These genes are temporally and spatially regulated but not necessarily linked. Although post-transcriptional mechanisms act to control the accumulation of some of these proteins, regulation occurs primarily at the transcriptional level. Accordingly, seed protein genes provide an excellent system to provide genetic regulatory elements, especially those elements which confer tissue specificity, temporal regulation, and responsiveness to environmental and chemical cues.
• Helianthinin is the major 11S globulin seed storage protein of sunflower (Helianthus annuus). Helianthinin expression, like that of other seed storage proteins, is tissue specific and under developmental control. However, the helianthin regulatory elements which confer such specificity have heretofore never been identified. Helianthinin mRNA is first detected in embryos 7 days post flowering (DPF) with maximum levels of mRNA reached at 12-15 DPF, after which the level of helianthinin transcripts begins to decline. In mature seeds or in germinating seedlings helianthinin transcripts are absent. Helianthinin polypeptide accumulation is rapid from DPF through 19 DPF but slows as the seed reaches later maturation stages (Allen et al. (1985) Plant Mol. Biol. 5, 165).
• DPF embryos 7 days post flowering
• Helianthinin like most seed proteins, is encoded by a small gene family. At least two divergent subfamilies are known, and are designated Ha2 and Ha10. Two clones, HaG3-A and HaG3-D, representing non-allelic members of the Ha2 subfamily, have been isolated and partially characterized (Vonder Haar et al. (1988) Gene 74, 433). However, a detailed analysis of the regulatory elements of these or any other helianthinin genes had not been known until now.
• regulatory elements from helianthinin genes can direct seed-specific gene expression, root-specific gene expression, abscisic acid-responsive gene expression, and/or temporally-altered gene expression. These regulatory elements enable the controlled expression of specific gene products in transgenic plants.
• the present invention provides greater control of gene expression in transgenic plants, thus allowing improved seed quality, improved tolerance to environmental conditions such as drought, and better control of herbicide resistance genes.
• the present invention is directed to the 5 regulatory region of a helianthinin gene.
• This region is herein referred to as the upstream regulatory ensemble (URE), and is useful in directing the expression of heterologous proteins.
• the URE consists of multiple regulatory elements which confer distinct regulated expression patterns when linked to the coding regions of heterologous genes which are expressed in transgenic plants.
• the present invention provides isolated DNA containing helianthinin regulatory elements which direct seed-specific gene expression, root-specific gene expression, abscisic acid (ABA)-responsive gene expression and/or temporally-altered gene expression.
• ABA abscisic acid
• Another aspect of this invention is directed to chimeric plant genes containing these regulatory elements.
• the regulatory elements are operably linked to the coding sequence of a heterologous gene such that the regulatory element is capable of controlling expression of the product encoded by the heterologous gene. If necessary, additional promoter elements or parts of these elements are included in the chimeric gene constructs.
• Plant transformation vectors comprising the chimeric genes of the present invention are also provided, as are plant cells transformed by these vectors, and plants and their progeny containing the chimeric genes.
• a method for producing a plant with improved seed-lipid quality is provided.
• Chimeric ge are constructed according to the present invention in which a regulatory element directing seed-specific expression is linked to the coding region of a gene encoding a lipid metabolism enzyme.
• plant cells are transformed with this chimeric gene, plants with improved seed lipid-quality can be regenerated.
• a further aspect of the present invention provides a method for producing a herbicide-resistant plant.
• chimeric genes are constructed in which a root-specific regulatory element directs the expression of herbicide-resistance gene. Plant cells are transformed with this chimeric gene to regenerate herbicide-resistant plants.
• Fig. 1 depicts the nucleotide sequence of the URE of helianthinin gene HaG3-A. Nucleotide numbers -2377 to +24 of Fig. 1 correspond to nucleotide numbers 1 to 2401 of SEQ ID NO: 1.
• Fig. 2 depicts the nucleotide sequence of part of the URE of helianthinin gene HaG3-D. Nucleotide numbers -2457 to -726 of Fig. 2 correspond to nucleotide numbers 1 to 1732 of SEQ ID NO: 2.
• Fig. 3 represents the nucleotide sequence of part of the URE of helianthinin gene HaG3-D. Nucleotide numbers -725 to -322 of Fig. 3 correspond to nucleotide numbers 1 to 404 of SEQ ID NO: 3. In the helianthinin gene HaG3-D, the nucleotide sequence of Fig. 3 is immediately downstream (3') of the sequence of Fig. 2. Fig. 4 depicts the HaG3-A FL/GUS construction and the control constructions pBI121.1 and pBI101.1.
• Fig. 5 depicts a restriction map of helianthinin genomic clones HaG3-A and HaG3-D and the restriction fragments used to construct the parental plasmids.
• Fig. 6 depicts the HaG3-A and HaG3-D derivative constructions in relation to the full length construction.
• Fig. 7 demonstrates histochemical localization of GUS activity in transgenic seedlings containing the HaG3-D-N and HaG3-A-SB/R constructions.
• A HaG3-D-404N, 8 days post- imbibition (DPI);
• B HaG3-A-SB/R, 8 DPI;
• C HaG3-D-404N, 14 DPI;
• D HaG3-A-SB/R, 14 DPI;
• E HaG3-A-SB/R, 8 DPI;
• F HaG3-A-SB/R, 6 DPI.
• Fig. 8 graphically illustrates the induction of GUS activity in transgenic tobacco leaves containing HaG3-D-404N during progressive desiccation and subsequent recovery from water deficit.
• Fig. 9 is a graph depicting ABA induction of GUS expression in leaves of tobacco containing HaG3-D-404N.
• the present invention comprises cis-regulatory elements of the upstream regulatory ensemble (URE) of sunflower helianthinin genes. These cis-regulatory elements are discrete regions of the URE that confer regulated expression upon the gene under their control.
• this invention provides isolated nucleic acid containing at least one regulatory element from a helianthinin gene which directs at least one of the following: seed-specific gene expression, root-specific gene expression, ABA-responsive gene expression or temporally-altered gene expression. Any helianthinin gene can provide the regulatory elements, including Ha2 and Ha10 genes, which represent two divergent helianthinin gene subfamilies.
• the helianthinin genes are HaG3-A and HaG3-D, which are members of the Ha2 subfamily.
• One of the subject regulatory elements directs seed-specific expression.
• a seed-specific regulatory element represents a particular nucleotide sequence that is capable of causing the expression of the gene under its control to occur in the seed, i.e. for the gene produced to be detected in the seed.
• Expression that is seed-specific may be in any part of the seed, e.g., but not limited to, the cotyledons and embryonic axis of the embryo and to the endosperm. No gene expression is detected in seedlings or somatic tissues of the adult plant for genes under seed-specific control.
• a deletion analysis of the entire URE of a helianthinin gene can be performed.
• nucleotides are successively removed from the entire URE, and the resulting fragments are ligated to the coding sequence of a reporter gene or other heterologous gene.
• the constructs are then analyzed for their ability to direct seed-specific expression by detecting the presence of the reporter gene product in seed tissues and not in other tissues.
• the seed- specific elements which have been identified can also be modified, e.g. by site-directed mutagenesis.
• the modified regulatory elements can then be assayed for their ability to direct seed-specific expression, thereby identifying alternative sequences that confer seed-specificity.
• an analysis of the URE of the helianthinin HaG3-A gene indicates that seed-specific regulatory elements are provided by nucleotides 851 to 2401, and by nucleotides 1 to 2401 of SEQ ID NO: 1.
• Root-specific expression is of particular interest and importance. Normally the sunflower helianthinin gene is expressed only in seeds. When particular regions of the helianthinin URE are isolated from the entire URE in accordance with the present invention, expression is exclusively localized to plant roots.
• a root- specific regulatory element represents a particular nucleotide sequence that is capable of causing the expression of the gene under its control to occur in plant roots and not in other plant tissues. Regulatory elements that direct root-specific expression are identified by analyzing fragments of a helianthinin URE for their ability to confer root-specific expression as described above for the identification of seed- specific regulatory elements except expression is detected in root tissues.
• Root-specific regulatory elements from any helianthinin gene can be identified by such techniques. For example, in a preferred embodiment, an analysis of the URE of the helianthinin HaG3-A gene indicates that nucleotides 1 to 1639 and nucleotides 851 to 1639 of SEQ ID NO: 1 represent root-specific regulatory elements.
• Helianthinin expression is under strict temporal control, with mRNA first detected at 12 DPF. Accordingly, it has been discovered that cis-regulatory elements exist which confer temporally-altered gene expression which is detectable as early as about 4 DPF.
• a deletion analysis of the entire URE of a helianthinin gene can be performed. Fragments of the URE are linked to the coding sequence of a heterologous gene and the resulting chimeric construction is used to transform plants. Seeds from transformed plants are staged by days post flowering, and the staged seeds are assayed to detect the expression of the heterologous gene. Elements that direct expression of the heterologous gene before about 10 DPF are identified as elements that confer temporally-altered expression. Modifications of the nucleotide sequences of such elements that confer the desired phenotype can be identified as described above.
• an analysis of the URE of the helianthinin gene HaG3-A indicates that elements that confer temporally-altered gene expression are provided by nucleotide 1 to 851 and 1639 to 2303 of SEQ ID NO: 1.
• ABA-responsive element represents a particular nucleotide sequence that is capable of causing the gene under its control to be expressed in response to ABA.
• Expression of the gene under the control of the ABA-responsive element can be induced by treatment with ABA, or by external stimuli that are known to result in the initiation of ABA biosynthesis.
• ABA biosynthesis is initiated as a result of loss of turgor caused by environmental stresses including water-deficit, water-stress and salt-stress (reviewed in Zeevaart et al. (1988) Annu. Rev. Plant Physiol. 39, 439).
• Levels of ABA also increase in response to wounding, (Pena-Cortes et al. (1989) Proc. Natl. Acad Sci. USA 86, 9851).
• ABA-responsive elements are identified as described above for the identification of other regulatory elements. For example, deletion analysis can be used to identify nucleotide sequences of any helianthinin gene that induce the expression of a gene under its control in response to ABA. Such sequences can be modified as described above, and assayed to identify alternative sequences that confer ABA-responsive expression.
• an analysis of the URE of the helianthinin HaG3-A gene indicates that nucleotides 1 to 2401 of SEQ ID NO: 1 provide an element that confers ABA-responsive expression in seeds.
• nucleotides 851 to 1639 or 1639 to 2303 of SEQ ID NO: 1 provide an element that confers ABA-responsive expression in leaves of adult plants.
• an analysis of the URE of the helianthinin HaG3-D gene indicates that nucleotides 1 to 404 of SEQ ID NO: 3 confer ABA-responsive expression in non-embryonic tissues of plants.
• ABA-responsive elements have utility in that specific environmental cues can initiate ABA biosynthesis, and further induce expression of genes under the control of an ABA-responsive element.
• Expression of heterologous genes driven by the ABA-responsive elements of the helianthinin URE is not restricted to seeds, but is also observed in leaves of adult plants and in tissues of seedlings.
• An isolated nucleic acid encoding the upstream regulatory ensemble of a helianthinin gene can be provided as follows.
• Helianthinin recombinant genomic clones are isolated by screening a sunflower genomic DNA library with a cDNA recombinant representing helianthinin mRNA (Vonder Haar (1988) Gene 74, 433). Methods considered useful in obtaining helianthinin genomic recombinant DNA are contained in Sambrook et al., 1989, in Molecular Cloning: A Laboratory Manual, Cold Spring Harbor, NY, for example, or any of the myriad of laboratory manuals on recombinant DNA technology that are widely available. To determine nucleotide sequences, a multitude of techniques are available and known to the ordinarily skilled artisan.
• restriction fragments containing a helianthinin URE can be subcloned into the polylinker site of a sequencing vector such as pBluescript (Stratagene). These pBluescript subclones can then be sequenced by the double-strand dideoxy method (Chen and Seeburg (1985) DNA 4 , 165).
• the nucleotide sequence for DNA encoding the URE of helianthinin gene clone HaG3A is shown in Fig. 1 and presented as SEQ ID NO: 1.
• the nucleotide sequence for DNA encoding a region of the URE of helianthinin clone HaG3D is shown in Fig. 2 and presented as nucleotide sequence SEQ ID NO: 2.
• encoding of other helianthinin genes can be obtained by the same strategy.
• clones representative of other members of the helianthinin gene family can be obtained by using the HaG3A or HaG3D coding or URE sequences of the present invention as hybridization probes to screen a helianthinin genomic library and identify the additional helianthinin genes.
• the identification of cis-regulatory sequences that direct temporal, tissue-specific and ABA-responsive regulation can be accomplished by transcriptional fusions of specific sequences with the coding sequence of a heterologous gene, transfer of the chimeric gene into an appropriate host, and detection of the expression of the heterologous gene.
• the assay used to detect expression depends upon the nature of the heterologous sequence. For example, reporter genes, exemplifed by chloramphenicol acetyl transferase and ß-glucuronidase (GUS), are commonly used to assess transcriptional and translational competence of chimeric constructions. Standard assays are available to sensitively detect the reporter enzyme in a transgenic organism.
• the ß-glucoronidase (GUS) gene is useful as a reporter of promoter activity in transgenic tobacco plants because of the high stability of the enzyme in tobacco cells, the lack of intrinsic ß-glucuronidase activity in higher plants and availability of a qualitative fluorimetric assay and a histochemical localization technique.
• Jefferson et al. [(1987) EMBO J, 6. 3901)] have established standard procedures for biochemical and histochemical detection of GUS activity in plant tissues. Biochemical assays are performed by mixing plant tissue lysates with 4-methylumbelliferyl-ß-D-glucuronide, a fluorimetric substrate for GUS, incubating one hour at 37°C, and then measuring the fluorescence of the resulting 4-methylumbelliferone.
• Histochemical localization for GUS activity is determined by incubating plant tissue samples in 5-bromo-4- chloro-3-indolyl-glucuronide (X-Gluc) for 18 hours at 37°C, and observing the staining pattern of X-Gluc.
• X-Gluc 5-bromo-4- chloro-3-indolyl-glucuronide
• Another aspect of the present invention is directed to a chimeric plant gene containing a regulatory element from a helianthinin gene which directs seed-specific gene expression, root-specific gene expression, ABA-responsive gene expression or temporally-altered gene expression linked to the coding sequence of a heterologous gene such that the regulatory element is capable of controlling expression of the product encoded by the heterologous gene.
• the heterologous gene can be any gene other than helianthinin. If necessary, additional promoter elements or parts of these elements sufficient to cause expression resulting in production of an effective amount of the polypeptide encoded by the heterologous gene are included in the chimeric constructs.
• the present invention provides chimeric genes comprising regions of the helianthinin URE that confer seed-specific expression in accordance with this invention which are linked to a sequence encoding a lipid metabolism enzyme such as a desaturase.
• the regions of the URE comprise nucleotides 851 to 2401 or 1 to 2401 of HaG3-A as shown in SEQ ID NO:1. Any modification of these sequences which confers seed-specific expression is contemplated. Seeds accumulate and store proteins and lipids, both of significant agronomic importance. Because elements of the helianthinin URE can direct high, regulated expression in developing seeds, these elements have utility in improving seed lipid and/or protein quality.
• lipid metabolism enzymes such as those involved in elongation and desaturation of fatty acids, and/or proteins, especially those with high lysine and methionine content.
• Chimeric genes containing these elements can be used to provide transgenic plant lines that accumulate and store significant amounts of specific classes of lipids and/or proteins.
• chimeric genes which have a region of the URE of helianthinin that confers root-specific expression fused to a heterologous gene.
• This construction confers expression spatially distinct from "normal" helianthinin expression in that the heterologous gene is expressed exclusively in plant roots.
• tissue-specific regulation is altered.
• the region of the HaG3-A URE comprises 1 to 1639 or 851 to 1639 of SEQ ID NO: 1 and is fused in reverse orientation to the promoter although these elements function in either orientation.
• the sequence providing herbicide resistance is at least part of the aroA gene. Any modification of these sequences which confers root-specific expression is contemplated.
• the present invention provides chimeric genes comprising elements of a helianthinin URE that confer root-specific expression fused to at least part of a promoter that functions in plants and further fused to at least part of the aroA gene or a sequence encoding a polypeptide conferring herbicide resistance.
• Polypeptides that confer resistance to glyphosate and related inhibitors of 5-enolpyrovylshikimic acid-3-phosphate synthase (EPSP synthase), sulfonylureas, imidazolinones and inhibitors of acetolactase synthase (ALS) and acetohydroxy acid synthase (AHS) are contemplated.
• the regions of the URE are 1 to 1639 or 851 to 1639 of HaG3-A, as shown in SEQ ID NO: 1 and are fused in reverse orientation to the promoter. Any modification of these sequences which confers root-specific expression is contemplated.
• chimeric genes comprising elements of the URE of helianthinin that confer temporally-altered expression fused in forward or reverse orientation to at least part of a promoter that functions in plants and further linked to the coding region of a heterologous gene.
• elements of the URE of helianthinin that confer temporally-altered expression fused in forward or reverse orientation to at least part of a promoter that functions in plants and further linked to the coding region of a heterologous gene.
• the elements of the URE of helianthinin that confer temporally-altered expression fused in forward or reverse orientation to at least part of a promoter that functions in plants and further linked to the coding region of a heterologous gene.
• nucleotides 1 to 851 or 1639 to 2303 of HaG3-A as shown in SEQ ID NO: 1. Any modification of these sequences that confers temporally altered gene expression is contemplated.
• Chimeric genes comprising elements of the URE of a helianthinin that confer ABA-responsive expression optionally fused in forward or reverse orientation to at least part of a promoter that functions in plants further fused to a heterologous gene.
• the element of the URE comprises 851 to 1639 or 1639 to 2303 of HaG3-A, as shown in SEQ ID NO: 1, or nucleotides 1 to 404 of HaG3-D, as shown in SEQ ID NO: 3.
• constructs that confer ABA-responsive expression to provide plants with improved tolerance to water stress.
• the chimeric genes of the present invention are constructed by fusing a 5' flanking sequence of a helianthinin genomic DNA to the coding sequence of a heterologous gene.
• the juxtaposition of these sequences can be accomplished in a variety of ways.
• the order of sequences, from 5' to 3' is a helianthinin upstream regulatory region, a promoter region, a coding sequence, and a polyadenylation site.
• the helianthinin URE regions that do not contain the CAAT and TATA boxes can be joined to a DNA fragment encoding a promoter that functions in plants.
• Plant promoters can be obtained commercially, or can be chemically synthesized based on their published sequences.
• An example of such a fragment is the truncated cauliflower mosaic virus 35S promoter, which retains its CAAT and TATA boxes.
• Other representative promoters include the nopaline synthase and ribulose 1,5 bisphosphate carboxylase promoters.
• the promoter fragment is further linked to the heterologous coding sequence.
• the 3' end of the coding sequence is fused to a polyadenylation site exemplified by, but not limited to, the nopaline synthase polyadenylation site.
• intermediate plant transformation vectors are available that contain one or more of these polyadenylation sites bordered by sequences required for plant transformation.
• the elements of the helianthinin URE and the heterologous coding sequences of the present invention can be subcloned into the polylinker site of a plant transformation vector to provide the chimeric genes.
• the 5' flanking elements of the present invention can be derived from restriction endonuclease or exonuclease digestion of a helianthinin genomic clone.
• the restriction fragments that contain the helianthinin CAAT and TATA boxes are ligated in a forward orientation to a promoterless heterologous gene such as the coding sequence of ß-glucuronidase (GUS).
• GUS ß-glucuronidase
• the heterologous product can be the coding sequence of any gene that can be expressed in such a construction. Such embodiments are contemplated by the present invention.
• the 3' end of the coding sequence is optionally fused to a polyadenylation site, exemplified by, but not limited to, the nopaline synthase polyadenylation site, or the octopine T-DNA gene 7 polyadenylation site.
• a polyadenylation site exemplified by, but not limited to, the nopaline synthase polyadenylation site, or the octopine T-DNA gene 7 polyadenylation site.
• the polyadenylation site can be provided by the heterologous gene.
• the 5' helianthinin regulatory elements that do not contain the TATA box can be linked in forward or reverse orientation to at least part of a plant promoter sequence, i.e. a plant promoter sequence containing at least the CAAT and TATA sequences.
• this promoter is a truncated cauliflower mosaic virus (CaMV) 35S promoter.
• CaMV cauliflower mosaic virus
• plants are transformed with the chimeric gene constructions of this invention.
• Gene transfer is well known in the art as a method to express heterologous genes in transgenic plants.
• the tobacco plant is most commonly used as a host because it is easily regenerated, yields a large number of developing seeds per plant, and can be transformed at a high frequency with Agrobacterium-derived Ti plasmid vectors (Klee, et al. (1987) Annu. Rev. Plant Physiol. 38, 467).
• Dicotyledenous plants including cotton, oil seed rape and soybean are preferred as transgenic hosts.
• any plant that can be effectively transformed and regenerated can be used as a transgenic host in the present invention.
• the chimeric genes can be introduced into plants by a leaf disk transformation-regeneration procedure as described by Horsch et al. (1985) Science 227, 1229).
• Other methods of transformation such as protoplast culture (Horsch et al., (1984) Science 223, 496; DeBlock et al. (1984) EMBO J. 2, 2143; Barton et al. (1983) Cell 32, 1033) or transformation of stem or root explants in vitro (Zambryski et al. (1983) EMBO J. 2 , 2143; Barton et al. (1983) Cell 32, 1033) can also be used and are within the scope of this invention.
• plants are transformed with Agrobacterium-derived vectors.
• Agrobacterium-derived vectors other methods are available to insert the chimeric genes of the present invention into plant cells. Such alternative methods include biolistic approaches (Klein et al. (1987) Nat 327, 70) electroporation, chemically-induced DNA uptake, and use of viruses or pollen as vectors.
• the chimeric genes of the present invention can be inserted into a plant transformation vector, e.g. the binary vector described by Bevan (1984).
• Plant transformation vectors can be derived by modifying the natural gene transfer system of Agrobacterium tumefaciens.
• the natural system comprises large Ti (tumor-inducing)-plasmids containing a large segment, known as T-DNA, which is transferred to transformed plants.
• Another segment of the Ti plasmid, the vir region is responsible for T-DNA transfer.
• the T-DNA region is bordered by terminal repeats.
• the tumor-inducing genes have been deleted and the functions of the vir region are utilized to transfer foreign DNA bordered by the T-DNA border sequences.
• the T-region also contains a selectable marker for antibiotic resistance, and a multiple cloning site for inserting sequences for transfer.
• Such engineered strains are known as "disarmed" A. tumefaciens strains, and allow the efficient transformation of sequences bordered by the T-region into the nuclear genomes of plants.
• heterologous or reporter gene in developing seeds, young seedlings and mature plants can be monitored by immunological, histochemical or activity assays.
• an assay for expression of the chimeric gene depends upon the nature of the heterologous coding region. For example, Northern analysis can be used to assess transcription if appropriate nucleotide probes are available. If antibodies to the polypeptide encoded by the heterologous gene are available, Western analysis and immunohistochemical localization can be used to assess the production and localization of the polypeptide. Depending upon the heterologous gene, appropriate biochemical assays can be used. For example, acetyltransferases are detected by measuring acetylation of a standard substrate. The expression of an herbicide-resistance gene can be detected by determining the herbicide resistance of the transgenic plant.
• transgenic plants or progeny of these plants containing the chimeric genes of the invention Both monocotyledenous and dicotyledenous plants are contemplated.
• Plant cells are transformed with the chimeric genes by any of the plant transformation methods described above.
• the transformed plant cell usually in a callus culture or leaf disk, is regenerated into a complete transgenic plant by methods well-known to one of ordinary skill in the art (e.g. Horsch et al. (1985) Science 227, 1129).
• the transgenic plant is cotton, oil seed rape, maize, tobacco, or soybean. Since progeny of transformed plants inherit the chimeric genes, seeds or cuttings from transformed plants are used to maintain the transgenic plant line.
• the instant invention also provides a method for producing a plant with improved seed lipid quality.
• This method comprises transforming a plant cell with a vector containing a chimeric gene comprising a seed-specific regulatory element linked to the coding sequence of a lipid metabolism enzyme such as a desaturase, and selecting for a plant with the desired characteristics.
• the regulatory element is provided by nucleotides 1 to 2401 or 851 to 2401 of the URE of HaG3A as shown in SEQ ID NO: 1.
• the transformed plant cells are regenerated into plants with improved seed lipid quality.
• Another aspect of the present invention provides a method for producing a plant with improved seed protein quality.
• This method comprises transforming a plant cell with a vector containing a chimeric gene comprising a seed-specific regulatory element linked to the coding sequence of a seed storage protein with a high content of lysine and/or methionine residues, and selecting for a plant with the desired characteristic.
• the regulatory element is provided by nucleotides 1 to 2401 or 851 to 2401 of the URE of HaG3-A as shown in SEQ ID NO: 1.
• the transformed plant cells are regenerated into plants with improved seed protein quality.
• Another aspect of the present invention provides a method for producing a herbicide-resistant plant.
• Plant cells are transformed with a vector containing a chimeric gene comprising a root-specific regulatory element linked to the coding sequence of a herbicide resistance gene such as a glyphosate resistance gene and then plants with the desired herbicide resistance are selected. Selected plants are those which survive a herbicide treatment which kills untransformed plants of the same kind under the same conditions.
• the regulatory element is provided by nucleotides 1 to 1639 or 851 to 1639 of the URE of HaG3-A as shown in SEQ ID NO: 1, and the heterologous sequence is provided by a gene encoding EPSP synthase, acetolactase synthase, or acetohydroxy acid synthase.
• the transformed plant cells are regenerated into herbicide-resistant plants.
• plants are transformed by the vector pRPA-ML-803, which contains the root-specific regulatory element comprising nucleotides 851 to 1639 of HaG3-A and the aroA herbicide-resistance gene.
• nucleotide sequences referred to in the following examples are numbered according to Fig. 1-3.
• GUS reporter cassettes used throughout the examples have been described previously (Jefferson et al. (1987) EMBO J. 6, 3901). Briefly, the coding region of GUS was ligated 5' of the nopaline synthase polyadenylation site in the polylinker site of the A. tumefaciens-derived vector pBIN19 (Bevan (1984) Nucleic Acids Res. 12, 8711). The vector pBIN19 contains the left and right borders of T-DNA necessary for plant transformation, and a kanamycin resistance gene. The resulting construction, pBI101.1, is depicted in Figure 4. Unique restriction sites upstream of the AUG initiation codon of GUS allow the insertion of promoter DNA fragments.
• the CaMV 35S promoter was ligated into the HindIII and BamHI sites of pBI101.1 to create pBI121.1, depicted in Fig. 4.
• the CaMV 35S promoter was truncated at an EcoRV site at -90 (leaving the CAAT and TATA boxes) and cloned into the polylinker site of pBI101.1.
• Table 1 describes the parental plasmids and derivative constructions.
• HaG3-A-FL and the control constructions pBI121.1 and pBI101.1 are depicted in Figure 4.
• Figure 5 shows the restriction fragments of genomic clones HaG3-A and HaG3-D used to construct parental plasmids.
• Figure 6 shows the derivative constructions schematically in relation to the full length construction.
• the HaG3-A/GUS constructions represent large overlapping fragments that span the full length regulatory region (-2377 to +24 of Fig. 1).
• the 3' ends of several constructions were derived from exonuclease III digestions of 2.8 kb HaG3-A fragment in pBluescript (Stratagene) [pHaG3-A- 2.8 (BamHI-PstI), Table 1]. These deletions are shown at the top of Figure 4.
• the first deletion, pHaG3-A-2.4 contains the HaG3-A CAAT and TATA boxes with its 3' end at -75.
• the BIN-19 based plasmid constructions were used to transform tobacco (Nicotiana tabacum cv. Xanthi) according to standard procedures (Horsch et al. 1985) except that initial transformants were selected on 50 ⁇ g kanamycin/ml and then were transferred to 100 ⁇ g/ml kanamycin. Plants were self-pollinated, and seeds were germinated on kanamycin (400 g/ml) to identify transformants, since the BIN-19 based constructions contain the neomycin phosphotransferase gene (NPTII), which confers resistance to the toxic antibiotic kanamycin.
• NPTII neomycin phosphotransferase gene
• pBI101.1 Bin 19-derived promoterless GUS reporter gene cassette.
• pBluescript contains 2.4 kb upstream of HaG3-A coding region and 0.38 kb downstream of
• exonuclease III digestion of pHaG3A-2.8 to +24 contains the HaG3-A CAAT and TATA boxes.
• exonuclease III digestion of pHaG3A-2.8 to -75 contains the HaG3-A CAAT box.
• HaG3-A-FL 2.4 kb insert of pHaG3A-2.4 fused to pBI101.1 in forward orientation
• GUS activity was determined in embryonic and non-embryonic tissues of transgenic tobacco containing each construction of Table 1. The standard procedures of Jefferson et al. (1987) were followed.
• Plant tissue was ground in extraction buffer (50 mM NaPO 4 , 10 mM EDTA, 0.1% Sarkosyl, 0.1% Triton X-100 and 10 mM ß-mercaptoethanol). After centrifugation of the lysate, the supernatant was removed to a fresh tube and dispensed in 100 ⁇ l aliquots. An equal volume of 2 mM 4-methlumbelliferyl-ß-D-glucuronide in extraction buffer was added and allowed to incubate at 37°C for 1 h. Reactions were stopped with 0.8 ml Na 2 CO 3 (0.2 M).
• the fluorescence of the resulting 4-methylumbelliferone (4-MU) was determined with a Hoeffer TKO-100 minifluorometer as described (Jefferson et al. 1987). GUS activity is expressed in picomoles 4-MU per unit mass total protein sample per minute.
• the overall activity conferred by the intact CaMV 35S promoter complex was higher than that conferred by all other constructions in somatic tissue except in roots.
• roots of seedlings containing the HB/R (-2377 to -739) and SB/R (-1527 to -739) constructions showed levels of GUS activity 7 to 8 times above that of roots expressing GUS under control of the intact CaMV 35S promoter.
• PROFILE c SEEDS a LEAF d ROOT Response
• Reverse (R), Normal (N) and Inverted (I), refer to the orientation of each helianthinin fragment with respect to the truncated 35S CaMV promoter.
• GUS assays represent averages from four to ten independently transformed plants for each construc- tion. Standard deviations are included.
• GUS activity was histochemically localized in seedlings containing HaG3-A-SB/R and HaG3-D-404N.
• Samples were washed in 50 mM NaPO 4 and incubated for 24 h at 37°C in 100 ⁇ l reaction buffer [50 mM NaPO 4 , pH 7.0, 2 mM 5-bromo-4-chloro-3- indolyl-glucuronide (X-Gluc), 0.1 mM potassium ferricyanide, and 0.1 mM potassium ferricyanide, and 0.1 mM potassium ferrocyanide].
• Samples were mounted on microscope slides with 80% glycerol.
• HaG3-D-404N (Fig. 7A) and HaG3-A-SB/R (Fig. 7B) seedlings grown on basal media containing 1% sucrose showed slightly different patterns of expression.
• HaG3-D-N driven GUS expression appeared at low levels in the cotyledons and at sifnificantly higher levels in the distal root region with no detectable activity in the hypocotyl.
• the HaG3-A-SB/R seedling also showed significant GUS activity in the distal root with no detectable activity in the hypocotyl or cotyledons.
• GUS activity was histochemically localized at 14 DPI in seedlings containing HaG3-D-404N that were grown in a water-deficient environment on sub-saturated filter paper; GUS activity was primarily in the leaves and roots of these seedlings (Fig. 7C).
• the GUS expression patterns of seedlings containing HaG3-A-SB/R was determined.
• the major site of GUS activity in the SB/R seedling was in the developing root tips (Fig. 7B, C).
• Fig. 7D The major site of GUS activity in the SB/R seedling was in the developing root tips.
• Fig. 7D The major site of GUS activity in the SB/R seedling was in the developing root tips.
• Fig. 7D The major site of GUS activity in the SB/R seedling was in the developing root tips.
• Fig. 7D The major site of GUS activity in the SB/R seedling was in the developing root tips
• Fig. 7D The major site of GUS activity in the SB/R seedling was in the developing root tips
• Fig. 7D The major site of GUS activity in the SB/R seedling was in the developing root tips.
• Fig. 7D The major site of GUS activity in the SB/R seedling was in the developing root tips.
• leaf disks of transgenic tobacco containing HaG3-D-404N were treated with ABA for increasing periods of time and were subsequently assayed for GUS expression. After a lag-time of approximately 3.5 hours, treatment with 10 mM ABA resulted in a rapid increase in GUS expression; GUS continued to accumulate through eight hours at which time the rate of accumulation decreased significantly (Fig. 9). There was no detectable GUS activity in leaf disks from the same plant maintained under identical conditions exclusive of ABA. Likewise, leaf disks from plants containing the HaG3-A full length URE showed no activity during the course of the experiment.
• transgenic plants containing pBI121 served as an important negative control.
• Leaf disks from plants containing pBI121 showed no increase in GUS activity in response to exogenous ABA throughout the experiment (+ABA: 12.6 ⁇ 3.3 pmole 4-MU/ ⁇ g/min; -ABA: 13.5 ⁇ 3.6 pmole 4-MU/ ⁇ g/min).
• the full-length (FL) helianthinin HaG3-A URE (-2377 to +24) was tested for its inducibility by ABA in developing seeds.
• Seeds containing the full length (FL) regulatory region driving the expression of GUS (Fig. 4) were staged at 11, 14, 18 and 24 days post flowering and were tested for their ability to respond to ABA.
• Induction by ABA was shown by the increased levels of GUS activity over levels obtained on basal media; results are summarized in Table 3.
• ABA responsiveness varied with the stage of development. Seeds from 11 DPF did not respond to ABA during the course of the experiment whereas more mature seeds did respond. Seeds from 14 DPF responded rapidly with induction above basal levels beginning as early as 1.5 hours.
• the preceeding results demonstrate a hierarchy controlling helianthinin gene expression so that the ABA-responsive elements contained within the HaG3 UREs are functional only within the context of the appropriate developmental program, i.e. seed maturation. Taking the ABA-responsive elements out of the context of the HaG3-A or HaG3-D UREs results in the loss of hierarchical control so that these elements are free to respond directly to ABA and indirectly to desiccation in leaves and seedlings of transgenic tobacco.
• the 0.66 kb BalI-SalI fragment from the parental plasmid pHaG3-A-2.3 was linked at its 5' end to a HindIII site and at its 3' end to an EcoRI site.
• the resulting cassette substituted for the double CaMV promoter region in the pRPA-BL-410 construct (described in French Patent Appln. No. 91 02872, filed March 5, 1991) by digesting pRPA-BL-410 with HindIII and EcoRl and subcloning the cassette into that vector.
• the resulting construct, termed pRPA-ML-803 comprises in the transcriptional frame the following elements: the helianthinin regulatory element, optimized transit peptide (OTP), aroA gene, nos terminator.
• the plasmid pRPA-ML-803 was transferred into
• Agrobacterium was used for leaf disk transformation of tobacco.
• ATCTCTCAAA CAATATATTA TTTTTTCTTA AAAACGAATG AGACATGCTC ACAATGGGAA
• ACATCAATAC ATGCTTCAGG TTTTGTGTTA GTCTTCGTTT TTTATATGGT TTTATCAGTG
• AAGAGATTAA AAAAAAAAAA GCAAGGAAAG TAAGTGTAAA GAGAGTAAAG AGAATGTAGC
• AACTGCGTGA ACTGATCTCA GCCCTTGATT TTTATGATCT TGAGATTAAA .
• GTGAGTGGCA 480 TGATGGTAAT TATTTGGTTA ATTTTTTTTC ATTTAATTAA ATACAAAAAG GGTATATGTG 540

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