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Current: Ca pump

A [Ca2+]inside dependent pump extrudes Ca2+ from the cell while consuming ATP.

  1. A 1000 cell network model for Lateral Amygdala (Kim et al. 2013)
  2. A biophysical model of thalamocortical network switching under propofol (Soplata et al., 2023)
  3. A focal seizure model with ion concentration changes (Gentiletti et al., 2022)
  4. A mathematical model of evoked calcium dynamics in astrocytes (Handy et al 2017)
  5. A synapse model for developing somatosensory cortex (Manninen et al 2020)
  6. Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018)
  7. Alcohol action in a detailed Purkinje neuron model and an efficient simplified model (Forrest 2015)
  8. Altered complexity in layer 2/3 pyramidal neurons (Luuk van der Velden et al. 2012)
  9. AOB mitral cell: persistent activity without feedback (Zylbertal et al., 2015)
  10. Ave. neuron model for slow-wave sleep in cortex Tatsuki 2016 Yoshida 2018 Rasmussen 2017 (all et al)
  11. Ca+/HCN channel-dependent persistent activity in multiscale model of neocortex (Neymotin et al 2016)
  12. CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015)
  13. Ca2+ Oscillations in Sympathetic neurons (Friel 1995)
  14. Calcium dynamics depend on dendritic diameters (Anwar et al. 2014)
  15. Calcium response prediction in the striatal spines depending on input timing (Nakano et al. 2013)
  16. Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013)
  17. Cerebellar granule cell (Masoli et al 2020)
  18. Channel density variability among CA1 neurons (Migliore et al. 2018)
  19. Circadian rhythmicity shapes astrocyte morphology and neuronal function in CA1 (McCauley et al 2020)
  20. Coincident signals in Olfactory Bulb Granule Cell spines (Aghvami et al 2019)
  21. Computational model of bladder small DRG neuron soma (Mandge & Manchanda 2018)
  22. Computer models of corticospinal neurons replicate in vitro dynamics (Neymotin et al. 2017)
  23. Dendritic signals command firing dynamics in a Cerebellar Purkinje Cell model (Genet et al. 2010)
  24. Different responses of mice and rats hippocampus CA1 pyramidal neurons to in vitro and in vivo-like inputs (vitale et al., 2023)
  25. Dopaminergic subtantia nigra neuron (Moubarak et al 2019)
  26. Double cable myelinated axon (Layer 5 pyramidal neuron; Cohen et al 2020)
  27. Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
  28. Endocannabinoid dynamics gate spike-timing dependent depression and potentiation (Cui et al 2016)
  29. Gamma genesis in the basolateral amygdala (Feng et al 2019)
  30. Hippocampal CA1 microcircuit model including somatic and dendritic inhibition (Bilash et al, 2023)
  31. Intrinsic sensory neurons of the gut (Chambers et al. 2014)
  32. Ionic mechanisms of dendritic spikes (Almog and Korngreen 2014)
  33. Levodopa-Induced Toxicity in Parkinson's Disease (Muddapu et al, 2022)
  34. LGMD with 3D morphology and active dendrites (Dewell & Gabbiani 2018)
  35. Model for K-ATP mediated bursting in mSNc DA neurons (Knowlton et al 2018)
  36. Model of eupnea and sigh generation in respiratory network (Toporikova et al 2015)
  37. Morphological determinants of action potential dynamics in substantia nigra (Moubarak et al 2022)
  38. Multiscale model of excitotoxicity in PD (Muddapu and Chakravarthy 2020)
  39. Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016)
  40. Neuronal dendrite calcium wave model (Neymotin et al, 2015)
  41. Nonlinear dendritic processing in barrel cortex spiny stellate neurons (Lavzin et al. 2012)
  42. Pancreatic Beta Cell signalling pathways (Fridlyand & Philipson 2016) (MATLAB)
  43. Paradoxical GABA-mediated excitation (Lewin et al. 2012)
  44. Reduced-morphology model of CA1 pyramidal cells optimized + validated w/ HippoUnit (Tomko et al '21)
  45. Schiz.-linked gene effects on intrinsic single-neuron excitability (Maki-Marttunen et al. 2016)
  46. SCZ-associated variant effects on L5 pyr cell NN activity and delta osc. (Maki-Marttunen et al 2018)
  47. Single-cell comprehensive biophysical model of SN pars compacta (Muddapu & Chakravarthy 2021)
  48. Stochastic calcium mechanisms cause dendritic calcium spike variability (Anwar et al. 2013)
  49. Striatal Spiny Projection Neuron, inhibition enhances spatial specificity (Dorman et al 2018)
  50. Synchronization in a realistic model of CA1 pyramidal neurons (Fiasconaro and Migliore 2024)
  51. The ventricular AP and effects of the isoproterenol-induced cardiac hypertrophy (Sengul et al 2020)
  52. Theta-gamma phase amplitude coupling in a hippocampal CA1 microcircuit (Ponzi et al. 2023)
  53. Using Strahler's analysis to reduce realistic models (Marasco et al, 2013)
  54. Ventricular cell model (Luo Rudy dynamic model) (Luo Rudy 1994) used in (Wang et al 2006) (XPP)
  55. Voltage- and Branch-specific Climbing Fiber Responses in Purkinje Cells (Zang et al 2018)
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