Generation and Analysis of 3D Virtual Neurons Using Genetic Regulatory Network Model

1. Shepherd, G.M., Mirsky, J.S., Healy, M.D., Singer, M.S., Skoufos, E., Hines, M.S., Nadkarni, P.M., Miller, P.L.: The Human Brain Project: Neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience data. Trends in Neuroscience 21(11), 460–468 (1998)

   Article  Google Scholar 

2. Markram, H.: The Blue Brain Project. Nature Reviews Neuroscience 7(2), 153–160 (2006)

   Article  MathSciNet  Google Scholar 

3. Buckmaster, P.S., Alonso, A., Canfield, D.R., Amaral, D.G.: Dendritic morphology, local circuitry, and intrinsic electrophysiology of principal neurons in the entorhinal cortex of macaque monkeys. Journal of Comparative Neurology 470(3), 317–329 (2004)

   Article  Google Scholar 

4. Koch, C., Segev, I.: The role of single neurons in information processing. Nature Neuroscience 3(1), 1171–1177 (2000)

   Article  Google Scholar 

5. Hillman, D.: Neuronal shape parameters and substructures as a basis of neuronal form. In: Schmitt, F.O., Worden, F.G. (eds.) The Neurosciences, 4th Study Program, pp. 477–498. MIT Press, Cambridge (1979)

   Google Scholar 

6. Burke, R., Marks, W., Ulfhake, B.: A parsimonious description of motorneuron dendritc morphology using computer simulation. Journal of Neuroscience 12(6), 2403–2416 (1992)

   Google Scholar 

7. Ascoli, G.A., Krichmar, J.L.: L-Neuron: A modeling tool for the efficient generation and parsimonious description of dendritic morphology. Neurocomputing 32(33), 1003–1011 (2000)

   Article  Google Scholar 

8. López-Cruz, P.L., Bielza, C., Larrañaga, P., Benavides-Piccione, R., DeFelipe, J.: Models and simulation of 3D neuronal dendritic trees using bayesian networks. Neuroinformatics 9(4), 347–369 (2011)

   Article  Google Scholar 

9. Berry, M., Bradley, P.M.: The application of network analysis to the study of branching patterns of large dendritic fields. Brain Research 109(1), 111–132 (1976)

   Article  Google Scholar 

10. Van Pelt, J., Van Ooyen, A., Uylings, H.B.M.: Modeling dendritic geometry and the development of nerve connections. In: DeSchutter, E., Cannon, R.C. (eds.) Computational Neuroscience: Realistic Modeling for Experimentalist, pp. 179–208. CRC Press, Boca Raton (2001)

    Google Scholar 

11. Cannon, R., Turner, D., Pyapali, G., Wheal, H.: An online archive of reconstructed hippocampal neurons. Journal of Neuroscience Methods 84(1), 49–54 (1998)

    Article  Google Scholar 

12. Ascoli, G.A., Donohue, D.E., Halavi, M.: NeuroMorpho.org: A central resource for neuronal morphologies. Journal of Neuroscience 27(35), 9247–9251 (2007)

    Article  Google Scholar 

13. NeuroMorpho.Org, http://neuromorpho.org/neuroMorpho/index.jsp

14. Hippocampal Neuronal Morphology, http://neuron.duke.edu/cells/cellArchive.html

15. Myatt, D.R., Hadlington, T., Ascoli, G.A., Nasuto, S.J.: Neuromantic–from semi-manual to semi-automatic reconstruction of neuron morphology. Frontiers in Neuroinformatics 6(4), 1–14 (2012)

    Google Scholar 

16. Ascoli, G.A., Krichmar, J.L., Scorcioni, R., Nasuo, S.J., Senft, S.L.: Computer generation and quantitative morphometric analysis of virtual neurons. Anatomy and Embryology 204(4), 283–301 (2001)

    Article  Google Scholar 

17. Rall, W.: Branching dendritic trees and motoneuron membrane resistivity. Experimental Neurology 1(5), 491–527 (1959)

    Article  Google Scholar 

18. Ascoli, G.A.: Progress and perspectives in computational neuroanatomy. Anatomical Record 257(6), 195–207 (1999)

    Article  Google Scholar 

Download references