Nothing Special   »   [go: up one dir, main page]

Skip to main content

Multi-objective Automatic Clustering with Gene Rearrangement and Cluster Merging

  • Chapter
  • First Online:
Advances in Intelligent Systems Research and Innovation

Part of the book series: Studies in Systems, Decision and Control ((SSDC,volume 379))

  • 450 Accesses

Abstract

As an unsupervised machine learning method, clustering is an important approach to understanding structural information in data. However, current adaptive clustering approach using multi-objective optimization framework have two apparent limitations. The first is that prior knowledge is needed to identify the correct cluster number. The second is difficulty in evaluating the best clustering solutions from the Pareto Optimal Front (POF) generated by a multi-objective optimization. These problems become severer in non-category datasets. Therefore, the primary goal of this research is to establish a genetic optimization based multi-objective clustering framework, in which multiple clustering validity indexes (CVIs) can be tested simultaneously to automatically obtain the optimal cluster number without knowing any sample label information in advance. In this effort, we will not only be able to consider clustering measurements such as cluster cohesion and separation, but also take other aspects, such as compactness, connectivity, variation among data elements, into consideration as well. Then, we aim to design a procedure to recommend three best solutions from the POF by using appropriate combination of CVIs without increasing computational cost. This procedure is expected to control the cluster number in a reasonable range and consequently decrease the difficulty in best solution recommendation. Finally, since we have the knowledge that using gene rearrangement in the genetic optimization does not affect partition, we take this advantage to merge clusters effectively and significantly speed the convergence of the algorithm. Our approach can outperform the state-of-the-art counterparts across diverse benchmark datasets in terms of partitioning accuracy and performance, as demonstrated in three experiments conducted on both artificial and typical real-world datasets.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 149.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 199.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Ren, Y., Liu, X., Liu, W.: DBCAMM: A novel density based clustering algorithm via us-ing the Mahalanobis metric. Appl. Soft Comput. 12, 1542–1554 (2012)

    Article  Google Scholar 

  2. He, P., Zhu, J., He, S., et al.: Towards Automated Log Parsing for Large-Scale Log Data Analysis. IEEE Trans. Dependable Secure Comput. 15, 931–944 (2018)

    Article  Google Scholar 

  3. Paul, A.K., Shill, P.C.: New automatic fuzzy relational clustering algorithms using multi-objective NSGA-II. Inf. Sci. 448, 112–133 (2018)

    Article  MathSciNet  Google Scholar 

  4. Said, A., Abbasi, R.A., Maqbool, O., et al.: CC-GA: a clustering coefficient based genetic algorithm for detecting communities in social networks. Appl. Soft Comput. 63, 59–70 (2018)

    Article  Google Scholar 

  5. Qu, H.C., Qiu, Z.L., Tang, X.M., Xiang, M., Wang, P.: Incorporating un-supervised learn-ing into intrusion detection for wireless sensor networks with structural co-evolvability. Appl. Soft Comput. 71, 939–951 (2018)

    Article  Google Scholar 

  6. MacQueen, J.B.: Some methods for the classification and analysis of multivariate observations. In: Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability, pp. 281–297. University of California Press (1967)

    Google Scholar 

  7. Rodriguez, A., Laio, A.: Clustering by fast search and find of density peaks. Science 344, 1492–1496 (2014)

    Article  Google Scholar 

  8. Ester, M., Kriege, H.P., Sander, J., et al.: A density-based algorithm for discovering clusters in large spatial databases with noise. In: International Conference on Knowledge Discovery & Data Mining, Chiang Mai (1996)

    Google Scholar 

  9. Karypis, G., Han, E.H., Kumar, V.: Chameleon: hierarchical clustering using dynamic modeling. Computer 32, 68–75 (2002)

    Article  Google Scholar 

  10. Jain, A.K.: Data clustering: 50 Years beyond K-means. Pattern Recogn. Lett. 31, 651–666 (2010)

    Article  Google Scholar 

  11. Hruschka, E.R., Campello, R.J.G.B., Freitas, A.A., Leon, P.: A survey of evolutionary algorithms for clustering. IEEE Trans. Syst. Man Cybern. Syst. Part C (Appl. Rev.) 39, 133–155 (2009)

    Google Scholar 

  12. Cowgill, M.C., Harvey, R.J., Watson, L.T.: A genetic algorithm approach to cluster an-alysis. Comput. Math. Appl 37(7), 99–108 (1999)

    Article  MathSciNet  Google Scholar 

  13. Coello Coello, C.A.: List of References on Evolutionary Multi-objective Optimization (2010)

    Google Scholar 

  14. Theodoridis, S., Koutroumbas, K.: Pattern Recognition, 4th edn. Elsevier, Amsterdam (2009)

    MATH  Google Scholar 

  15. Handl, J., Knowles, J.: An evolutionary approach to multi-objective clustering. IEEE Trans. Evol. Comput. 11(1), 56–76 (2007)

    Article  Google Scholar 

  16. Kim, M., Ramakrishna, R.S.: New indices for cluster validity assessment. Pattern Recogn. Lett. 26(15), 2353–2363 (2005)

    Article  Google Scholar 

  17. Saha, I., Maulik, U., Plewczynski, D.: A new multi-objective technique for differential fuzzy clustering. Appl. Soft Comput. 11(2), 2765–2776 (2011)

    Article  Google Scholar 

  18. Wikaisuksakul, S.: A multi-objective genetic algorithm with fuzzy c-means for auto-matic data clustering. Appl. Soft Comput. 24, 679–691 (2014)

    Google Scholar 

  19. Yang, C.L., Kuo, R.J., Chien, C.H., et al.: Non-dominated sorting genetic algorithm using fuzzy membership chromosome for categorical data clustering. Appl. Soft Comput. 30, 113–122 (2015)

    Article  Google Scholar 

  20. Engelbrecht, A.P.: Computational Intelligence: an Introduction, 2nd edn. Wiley, Hoboken (2007)

    Book  Google Scholar 

  21. Gupta, A., Datta, S., Das, S.: Fuzzy clustering to identify clusters at different levels of fuzziness: an evolutionary multi-objective optimization approach. IEEE Trans. Cybern. 1–11 (2019)

    Google Scholar 

  22. Nanda, S. J, Panda, G.: Automatic clustering using MOCLONAL for classifying actions of 3D human models. In: Symposium on Humanities. Science and Engineering Research, Kuala Lumpur, pp. 945–950. IEEE (2012)

    Google Scholar 

  23. Matake, N., Hiroyasu, T., Miki, M., Senda, T.: Multiobjective clustering with automatic k-deter-mination for large-scale data. In: Proceedings of the 9th Annual Conference on Genetic and Evolutionary Computation (GECCO’07). ACM Press, New York, pp. 861–868 (2007)

    Google Scholar 

  24. Suresh, K., Kundu, D., Ghosh, S., Das, S., Abraham, A., Han, S.Y.: Multi-objective diff-erential evolution for automatic clustering with application to microarray data analysis. Sensors 9(5), 3981–4004 (2009)

    Article  Google Scholar 

  25. Xia, H., Zhuang, J., Yu, D.: Novel soft subspace clustering with multi-objective evolutionary approach for high-dimensional data. Pattern Recogn. 46(9), 2562–2575 (2013)

    Article  Google Scholar 

  26. Deb, K., Pratap, A., Agarwal, S., Meyarivan, T.: A fast and elitist multi-objective genetic algorithm: NSGA-II. IEEE Trans. Evol. Comput. 6(2), 182–197 (2002)

    Article  Google Scholar 

  27. Liu, Y., Ozyer, T., Alhajj, R., Barker, K.: Integrating multi-objective genetic algorithm an-d valid-ity analysis for locating and ranking alternative clustering. Informatica 29(1), 33–40 (2005)

    MATH  Google Scholar 

  28. Liu, Y., Wu, X., Shen, Y.: Automatic clustering using genetic algorithms. Appl. Soft Comput. 218(4), 1267–1279 (2011)

    MathSciNet  MATH  Google Scholar 

  29. He, H., Tan, Y.: A two-stage genetic algorithm for automatic clustering. Neurocomputing 81, 49–59 (2012)

    Article  Google Scholar 

  30. Ding, Y., Fu, X.: Kernel-based fuzzy C-means clustering algorithm based on genetic algorithm. Neurocomputing 188, 233–238 (2015)

    Article  Google Scholar 

  31. Rendón, E., Abundez, I., Arizmendi, A., Quiroz, E.M.: Internal versus external cluster validation indexes. Int. J. Comput. Commun. 1, 27–34 (2011)

    Google Scholar 

  32. Hancer, E., Karaboga, D.: A comprehensive survey of traditional, merge-split and Evolutionary approaches proposed for determination of cluster number. Swarm Evolution. Comput. 32, 49–67 (2017)

    Article  Google Scholar 

  33. Pal, N.R., Bezdek, J.C.: On cluster validity for the fuzzy c-means model. IEEE Trans. Fuzzy Syst. 3(3), 370–379 (1995)

    Article  Google Scholar 

  34. Hwei-Jen, L., et al.: An efficient GA-based clustering technique. J. Tamkang J. Sci. Eng. 8(2), 113–122 (2005)

    Google Scholar 

  35. Qu, H.C., Liu, G.: Threshold optimized strategy based on improved flower pollination algorithm for unbalanced data. In: IEEE 10th International Conference on Intelligent System-s (IS), pp. 551–556 (2020)

    Google Scholar 

Download references

Acknowledgements

This research was funded by the National Natural Science Foundation of China (61871061), which is gratefully acknowledged.

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2022 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Qu, H., Yin, L., Tang, X. (2022). Multi-objective Automatic Clustering with Gene Rearrangement and Cluster Merging. In: Sgurev, V., Jotsov, V., Kacprzyk, J. (eds) Advances in Intelligent Systems Research and Innovation. Studies in Systems, Decision and Control, vol 379. Springer, Cham. https://doi.org/10.1007/978-3-030-78124-8_5

Download citation

Publish with us

Policies and ethics