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Graph Classification via Graph Structure Learning

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Intelligent Information and Database Systems (ACIIDS 2022)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 13758))

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Abstract

With the ability of representing structures and complex relationships between data, graph learning is widely applied in many fields. The problem of graph classification is important in graph analysis and learning. There are many popular graph classification methods based on substructures such as graph kernels or ones based on frequent subgraph mining. Graph kernels use handcraft features, hence it is so poor generalization. The process of frequent subgraph mining is NP-complete because we need to test isomorphism subgraph, so methods based on frequent subgraph mining are ineffective. To address this limitation, in this work, we proposed novel graph classification via graph structure learning, which automatically learns hidden representations of substructures. Inspired by doc2vec, a successful and efficient model in Natural Language Processing, graph embedding uses rooted subgraph and topological features to learn representations of graphs. Then, we can easily build a Machine Learning model to classify them. We demonstrate our method on several benchmark datasets in comparison with state-of-the-art baselines and show its advantages for classification tasks.

T. Huynh and T. T. T. Ho---Contributed equally to this work.

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References

  1. Szklarczyk, D., et al.: STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Res. 47(D1), D607–D613 (2019)

    Article  Google Scholar 

  2. Trinajstic, N.: Chemical Graph Theory. CRC Press (2018)

    Google Scholar 

  3. Siew, C.S., Wulff, D.U., Beckage, N.M., Kenett, Y.N.: Cognitive network science: a review of research on cognition through the lens of network representations, processes, and dynamics. Complexity 2019, 2108423 (2019)

    Article  Google Scholar 

  4. Lanciano, T., Bonchi, F., Gionis, A.: Explainable classification of brain networks via contrast subgraphs. In: Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining, pp. 3308–3318 (2020)

    Google Scholar 

  5. Tabassum, S., Pereira, F.S., Fernandes, S., Gama, J.: Social network analysis: an overview. Wiley Interdisc. Rev.: Data Min. Knowl. Discovery 8(5), e1256 (2018)

    Google Scholar 

  6. Chen, X., Jia, S., Xiang, Y.: A review: knowledge reasoning over knowledge graph. Expert Syst. Appl. 141, 112948 (2020)

    Article  Google Scholar 

  7. Domingo-Fernández, D., et al.: COVID-19 knowledge graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology. Bioinformatics 37(9), 1332–1334 (2021)

    Article  Google Scholar 

  8. Shervashidze, N., Schweitzer, P., Van Leeuwen, E.J., Mehlhorn, K., Borgwardt, K.M.: Weisfeiler-lehman graph kernels. J. Mach. Learn. Res. 12(9), 2539–2561 (2011)

    MathSciNet  MATH  Google Scholar 

  9. Kriege, N.M., Johansson, F.D., Morris, C.: A survey on graph kernels. Appl. Netw. Sci. 5(1), 1–42 (2019). https://doi.org/10.1007/s41109-019-0195-3

    Article  Google Scholar 

  10. Chang, C.C., Lin, C.J.: LIBSVM: a library for support vector machines. ACM Trans. Intell. Syst, Technol. (TIST) 2(3), 1–27 (2011)

    Article  Google Scholar 

  11. Vishwanathan, S.V.N., Schraudolph, N.N., Kondor, R., Borgwardt, K.M.: Graph kernels. J. Mach. Learn. Res. 11, 1201–1242 (2010)

    MathSciNet  MATH  Google Scholar 

  12. Borgwardt, K.M., Kriegel, H.P.: Shortest-path kernels on graphs. In: Fifth IEEE International Conference on Data Mining (ICDM’05), pp. 8-pp. IEEE (2005)

    Google Scholar 

  13. Nikolentzos, G., Meladianos, P., Rousseau, F., Stavrakas, Y., Vazirgiannis, M.: Shortest-path graph kernels for document similarity. In: Proceedings of the 2017 Conference on Empirical Methods in Natural Language Processing, pp. 1890–1900 (2017)

    Google Scholar 

  14. Horváth, T., Gärtner, T., Wrobel, S.: Cyclic pattern kernels for predictive graph mining. In: Proceedings of the Tenth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 158–167 (2004)

    Google Scholar 

  15. Shervashidze, N., Vishwanathan, S. V. N., Petri, T., Mehlhorn, K., Borgwardt, K.: Efficient graphlet kernels for large graph comparison. In: Artificial Intelligence and Statistics, pp. 488–495. PMLR (2009)

    Google Scholar 

  16. Ramon, J., Gärtner, T.: Expressivity versus efficiency of graph kernels. In: Proceedings of the First International Workshop on Mining Graphs, Trees and Sequences, pp. 65–74 (2003)

    Google Scholar 

  17. Fei, H., Huan, J.: Structure feature selection for graph classification. In: Proceedings of the 17th ACM Conference on Information and Knowledge Management, pp. 991–1000 (2008)

    Google Scholar 

  18. Kong, X., Yu, P.S.: Semi-supervised feature selection for graph classification. In: Proceedings of the 16th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 793–802 (2010)

    Google Scholar 

  19. Schöning, U.: Graph isomorphism is in the low hierarchy. J. Comput. Syst. Sci. 37(3), 312–323 (1988)

    Article  MathSciNet  MATH  Google Scholar 

  20. Le, Q., Mikolov, T.: Distributed representations of sentences and documents. In: International Conference on Machine Learning, pp. 1188–1196. PMLR (2014)

    Google Scholar 

  21. Yanardag, P., Vishwanathan, S.V.N.: Deep graph kernels. In: Proceedings of the 21th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 1365–1374 (2015)

    Google Scholar 

  22. Al-Rfou, R., Perozzi, B., Zelle, D.: Ddgk: Learning graph representations for deep divergence graph kernels. In: The World Wide Web Conference, pp. 37–48 (2019)

    Google Scholar 

  23. Ivanov, S., Burnaev, E.: Anonymous walk embeddings. In: International conference on machine learning, pp. 2186–2195. PMLR (2018)

    Google Scholar 

  24. Rousseau, F., Kiagias, E., Vazirgiannis, M.: Text categorization as a graph classification problem. In: Proceedings of the 53rd Annual Meeting of the Association for Computational Linguistics and the 7th International Joint Conference on Natural Language Processing (Volume 1: Long Papers), pp. 1702–1712 (2015)

    Google Scholar 

  25. Wang, H., et al.: Incremental subgraph feature selection for graph classification. IEEE Trans. Knowl. Data Eng. 29(1), 128–142 (2016)

    Article  Google Scholar 

  26. Yan, X., Han, J.: gSpan: graph-based substructure pattern mining. In: 2002 IEEE International Conference on Data Mining, 2002 Proceedings, pp. 721–724. IEEE (2002)

    Google Scholar 

  27. Huan, J., Wang, W., Prins, J.: Efficient mining of frequent subgraphs in the presence of isomorphism. In: Third IEEE International Conference on Data Mining, pp. 549–552. IEEE (2003)

    Google Scholar 

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Correspondence to Bac Le .

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Huynh, T., Ho, T.T.T., Le, B. (2022). Graph Classification via Graph Structure Learning. In: Nguyen, N.T., Tran, T.K., Tukayev, U., Hong, TP., Trawiński, B., Szczerbicki, E. (eds) Intelligent Information and Database Systems. ACIIDS 2022. Lecture Notes in Computer Science(), vol 13758. Springer, Cham. https://doi.org/10.1007/978-3-031-21967-2_22

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  • DOI: https://doi.org/10.1007/978-3-031-21967-2_22

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  • Publisher Name: Springer, Cham

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  • Online ISBN: 978-3-031-21967-2

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