Abstract
Patlak model is widely used in 18F-FDG dynamic positron emission tomography (PET) imaging, where the estimated parametric images reveal important biochemical and physiology information. Because of better noise modeling and more information extracted from raw sinogram, direct Patlak reconstruction gains its popularity over the indirect approach which utilizes reconstructed dynamic PET images alone. As the prerequisite of direct Patlak methods, raw data from dynamic PET are rarely stored in clinics and difficult to obtain. In addition, the direct reconstruction is time-consuming due to the bottleneck of multiple-frame reconstruction. All of these impede the clinical adoption of direct Patlak reconstruction. In this work, we proposed a data-driven framework which maps the dynamic PET images to the high-quality motion-corrected direct Patlak images through a convolutional neural network. For the patient’s motion during the long period of dynamic PET scan, we combined the correction with the backward/forward projection in direct reconstruction to better fit the statistical model. Results based on fifteen clinical 18F-FDG dynamic brain PET datasets demonstrates the superiority of the proposed framework over Gaussian, nonlocal mean and BM4D denoising, regarding the image bias and contrast-to-noise ratio.
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References
Nordberg, A., et al.: The use of PET in Alzheimer disease. Nat. Rev. Neurol. 6(2), 78 (2010)
Machac, J.: Cardiac positron emission tomography imaging. In: Seminars in Nuclear Medicine, pp. 17–36. Elsevier (2005)
Beyer, T., et al.: A combined PET/CT scanner for clinical oncology. J. Nucl. Med. 41, 1369–1379 (2000)
Matthews, J.C., Angelis, G.I., Kotasidis, F.A., Markiewicz, P.J., Reader, A.J.: Direct reconstruction of parametric images using any spatiotemporal 4D image based model and maximum likelihood expectation maximisation. In: IEEE Nuclear Science Symposuim & Medical Imaging Conference, pp. 2435–2441. IEEE (2010)
Rahmim, A., Zhou, Y., Tang, J., Lu, L., Sossi, V., Wong, D.F.: Direct 4D parametric imaging for linearized models of reversibly binding PET tracers using generalized AB-EM reconstruction. Phys. Med. Biol. 57, 733 (2012)
Yan, J., Planeta-Wilson, B., Carson, R.E.: Direct 4-D PET list mode parametric reconstruction with a novel EM algorithm. IEEE Trans. Med. Imaging 31, 2213–2223 (2012)
Angelis, G.I., Gillam, J.E., Ryder, W.J., Fulton, R.R., Meikle, S.R.: Direct estimation of voxel-wise neurotransmitter response maps from dynamic pet data. IEEE Trans. Med. Imaging 38, 1371–1383 (2018)
Dimitrakopoulou-Strauss, A., et al.: Dynamic PET 18F-FDG studies in patients with primary and recurrent soft-tissue sarcomas: impact on diagnosis and correlation with grading. J. Nucl. Med. 42(5), 713–720 (2001)
Weber, W.A.: Use of PET for monitoring cancer therapy and for predicting outcome. J. Nucl. Med. 46(6), 983–995 (2005)
Patlak, C.S., Blasberg, R.G.: Graphical evaluation of blood-to-brain transfer constants from multiple-time uptake data. Generalizations. J. Cereb. Blood Flow Metab. 5(4), 584–590 (1985)
Gong, K., Cheng-Liao, J., Wang, G., Chen, K.T., Catana, C., Qi, J.: Direct Patlak reconstruction from dynamic PET data using the kernel method with MRI information based on structural similarity. IEEE Trans. Med. Imaging 37, 955–965 (2018)
Zhu, W., Li, Q., Bai, B., Conti, P.S., Leahy, R.M.: Patlak image estimation from dual time-point list-mode PET data. IEEE Trans. Med. Imaging 33, 913–924 (2014)
Karakatsanis, N.A., Casey, M.E., Lodge, M.A., Rahmim, A., Zaidi, H.: Whole-body direct 4D parametric PET imaging employing nested generalized Patlak expectation-maximization reconstruction. Phys. Med. Biol. 61, 5456–5485 (2016)
Wang, G., Qi, J.: Acceleration of the direct reconstruction of linear parametric images using nested algorithms. Phys. Med. Biol. 55(5), 1505–1517 (2010)
Tsoumpas, C., et al.: A survey of approaches for direct parametric image reconstruction in emission tomography. Med. Phys. 35(9), 3963–3971 (2008)
Ronneberger, O., et al.: U-net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28
Gong, K., et al.: Iterative PET image reconstruction using convolutional neural network representation. IEEE Trans. Med. Imaging 38(3), 675–685 (2018)
Jenkinson, M., et al.: Fsl. Neuroimage 62(2), 782–790 (2012)
Jiao, J., et al.: Direct parametric reconstruction with joint motion estimation/correction for dynamic brain PET data. IEEE Trans. Med. Imaging 36(1), 203–213 (2017)
Kingma, D.P., Ba, J.: Adam: a method for stochastic optimization. arXiv Prepr. arXiv1412.6980. (2014)
Xie, N., et al.: 3D tensor based nonlocal low rank approximation in dynamic PET reconstruction. Sensors (Switz.) 19(23), 1–20 (2019)
Buades, A., Coll, B., Morel, J.-M.: Non-local means denoising. Image Process. Line 1, 208–212 (2011)
Maggioni, M., Katkovnik, V., Egiazarian, K., Foi, A.: Nonlocal transform-domain filter for volumetric data denoising and reconstruction. IEEE Trans. Image Process. 22, 119–133 (2012)
Lempitsky, V., Vedaldi, A., Ulyanov, D.: Deep image prior. In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, pp. 9446–9454 (2018)
Gong, K., Catana, C., Qi, J., Li, Q.: PET image reconstruction using deep image prior. IEEE Trans. Med. Imaging 38, 1655–1665 (2019)
Cui, J., et al.: PET image denoising using unsupervised deep learning. Eur. J. Nucl. Med. Mol. Imaging 46(13), 2780–2789 (2019). https://doi.org/10.1007/s00259-019-04468-4
Acknowledgements
This work is supported in part by the National Natural Science Foundation of China (No: 61525106, 61427807, U1809204), by the National Key Technology Research and Development Program of China (No: 2017YFE0104000, 2016YFC1300302).
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Xie, N. et al. (2020). Clinically Translatable Direct Patlak Reconstruction from Dynamic PET with Motion Correction Using Convolutional Neural Network. In: Martel, A.L., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. MICCAI 2020. Lecture Notes in Computer Science(), vol 12267. Springer, Cham. https://doi.org/10.1007/978-3-030-59728-3_77
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