Abstract
Full-length and 5′ deletion fragments of three constitutively expressed gene promoters identified from the Citrus sinensis L. genome (cyclophilin (CsCYP), glyceraldehyde-3-phosphate dehydrogenase C2 (CsGAPC2), and elongation factor 1-alpha (CsEF1)) were evaluated for their ability to express the uidA gene in leaf, stem, and root tissues of transgenic N. benthamiana plants. According to the fluorometric GUS assays, the CsGAPC2 promoter activity was significantly reduced in the leaves when the sequence between position − 1090 and − 497 was removed, while the activity remained unchanged in the roots. The CsCYP promoter activity was not affected by the different deletions, and even the smallest evaluated fragment was sufficient to maintain the expression of the uidA gene in N. benthamiana leaves and roots. Truncated promoter fragments of CsEF1 conferred higher GUS activity in leaves compared with the full-length promoter, while GUS activity was not affected in the roots. The removal of the intron in the 5′ UTR of the CsEF1 promoter reduced gene expression in the roots, although it did not cause any reduction in the gene expression level in the leaves. These results indicate that any of the three deletions of the CsCYP promoter can be utilized for efficient gene expression. In addition, the full-length CsGAPC2 promoter and two of the truncated CsEF1 promoter fragments were sufficient for efficient uidA gene expression.
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References
Argüello-Astorga G, Herrera-Estrella L (1998) Evolution of light-regulated plant promoters. Annu Rev Plant Physiol Plant Mol Biol 49:525–555
Banerjee J, Sahoo DK, Raha S et al (2015) A region containing an as-1 element of dahlia mosaic virus (DaMV) subgenomic transcript promoter plays a key role in green tissue and root-specific expression in plants. Plant Mol Biol Rep 33:532–556
Bang SW, Park SH, Kim YS, Choi YD, Kim JK et al (2015) The activities of four constitutively expressed promoters in single-copy transgenic rice plants for two homozygous generations. Planta 241:1529–1541
Barrett LW, Fletcher S, Wilton SD (2012) Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements. Cell Mol Life Sci 69:3613–3634
Benfey PN, Chua NH (1990) The cauliflower mosaic virus 35S promoter: combinatorial regulation of transcription in plants. Science 250:959–966
Biłas R, Szafran K, Hnatuszko-konka K (2016) Cis-regulatory elements used to control gene expression in plants. Plant Cell Tissue Organ Cult 127:269–287
Brasileiro MCA, Carneiro CTV (1998) Manual de transformação genética de plantas. Embrapa, Brasília
Butler JEF, Kadonaga JT (2002) The RNA polymerase II core promoter: a key component in the regulation of gene expression. Genes Dev 16:2583–2592
Chen L, Jiang B, Wu C et al (2015) The characterization of GmTIP, a root-specific gene from soybean, and the expression analysis of its promoter. Plant Cell Tissue Organ Cult 121:259–274
Chiera JM, Bouchard RA, Dorsey SL, Park E, Buenrostro-Nava MT, Ling PP, Finer JJ et al (2007) Isolation of two highly active soybean (Glycine max (L.) Merr.) promoters and their characterization using a new automated image collection and analysis system. Plant Cell Rep 26:1501–1509
Curie C, Liboz T, Bardet C, Gander E, Médale C, Axelos M, Lescure B et al (1991) Cis and trans-acting elements involved in the activation of Arabidopsis thaliana A1 gene encoding the translation elongation factor EF-1 alpha. Nucleic Acids Res 19:1305–1310
De La Torre CM, Finer JJ (2015) The intron and 5′ distal region of the soybean Gmubi promoter contribute to very high levels of gene expression in transiently and stably transformed tissues. Plant Cell Rep 34:111–120
Donald RG, Cashmore AR (1990) Mutation of either G box or I box sequences profoundly affects expression from the Arabidopsis rbcS-1A promoter. EMBO J 9:1717–1726
Elmayan T, Tepfer M (1995) Evaluation in tobacco of the organ specificity and strength of the rolD promoter, domain A of the 35S promoter and the 35S2 promoter. Transgenic Res 4:388–396
Erpen L, Tavano ECR, Harakava R, Dutt M, Grosser JW, Piedade SMS, Mendes BMJ, Mourão Filho FAA (2018) Isolation, characterization, and evaluation of three Citrus sinensis-derived constitutive gene promoters. Plant Cell Rep 37:1113–1125
Gallegos JE, Rose AB (2015) The enduring mystery of intron-mediated enhancement. Plant Sci 237:8–15
Gidekel M, Jimenez B, Herrera-Estrella L (1996) The first intron of the Arabidopsis thaliana gene coding for elongation factor 1B contains an enhancer-like element. Gene 170:201–206
Han YJ, Kim YM, Hwang OJ, Kim J-II (2015) Characterization of a small constitutive promoter from Arabidopsis translationally controlled tumor protein (AtTCTP) gene for plant transformation. Plant Cell Rep 34:265–275
Hernandez-Garcia CM, Finer JJ (2014) Identification and validation of promoters and cis-acting regulatory elements. Plant Sci 217–218:109–119
Hernandez-Garcia CM, Martinelli AP, Bouchard RA, Finer JJ et al (2009) A soybean (Glycine max) polyubiquitin promoter gives strong constitutive expression in transgenic soybean. Plant Cell Rep 28:837–849
Higo K, Ugawa Y, Iwamoto M, Korenaga (1999) Plant cis-acting regulatory DNA elements (PLACE) database. Nucleic Acids Res 27:297–300
Hou J, Jiang P, Qi S et al (2016) Isolation and functional validation of salinity and osmotic stress inducible promoter from the maize type-II H+-pyrophosphatase gene by deletion analysis in transgenic tobacco plants. PLoS One 11:1–23
Jeong MJ, Shih MC (2003) Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Biochem Biophys Res Comm 300:555–562
Kumar D, Patro S, Ghosh J, Das A, Maiti IB, Dey N et al (2012) Development of a salicylic acid inducible minimal sub-genomic transcript promoter from figwort mosaic virus with enhanced root- and leaf-activity using TGACG motif rearrangement. Gene 503:36–47
Lam E, Benfey PN, Chua NH (1989) Characterization of AS1: a factor binding site on the 35S promoter of cauliflower mosaic virus. UCLA symposia on molecular and cellular biology 129:71–79
Le Hir H, Nott A, Moore MJ (2003) How introns influence and enhance eukaryotic gene expression. Trends Biochem Sci 28:215–220
Leach F, Aoyagi K (1991) Promoter analysis of the highly expressed rolC and rolD root-inducing genes of Agrobacterium rhizogenes: enhancer and tissue-specific DNA determinants are dissociated. Plant Sci 79:69–76
Li ZT, Kim KH, Jasinski JR, Creech MR, Gray DJ et al (2012) Large-scale characterization of promoters from grapevine (Vitis spp.) using quantitative anthocyanin and GUS assay systems. Plant Sci 196:132–142
Li J, Xu RF, Qin RY, Ma H, Li H, Zhang YP, Li L, Wei PC, Yang JB et al (2014) Isolation and functional characterization of a novel rice constitutive promoter. Plant Cell Rep 33:1651–1660
López-Ochoa L, Acevedo-Hernández G, Martínez-Hernández A, Argüello-Astorga G, Herrera-Estrella L et al (2007) Structural relationships between diverse cis-acting elements are critical for the functional properties of a rbcS minimal light regulatory unit. J Exp Bot 58:4397–4406
Lu J, Sivamani E, Azhakanandam K, Samadder P, Li X, Qu R et al (2008) Gene expression enhancement mediated by the 5′ UTR intron of the rice rubi3 gene varied remarkably among tissues in transgenic rice plants. Mol Gen Genomics 279:563–572
Meyer P, Saedler H (1996) Homology-dependent gene silencing in plants. Annu Rev Plant Physiol Plant Mol Biol 47:23–48
Mukherjee S, Stasolla C, Brûlé-Babel A, Ayele BT (2015) Isolation and characterization of rubisco small subunit gene promoter from common wheat (Triticum aestivum L .). Plant Signal Behav 10:e989033
Murashige T, Skoog F (1962) A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol Plant 15:473–497
Park SH, Yi N, Kim YS, Jeong MH, Bang SW, Choi YD, Kim JK et al (2010) Analysis of five novel putative constitutive gene promoters in transgenic rice plants. J Exp Bot 61:2459–2467
Porto MS, Pinheiro MPN, Batista VGL, dos Santos R, Filho Pde A, de Lima LM et al (2014) Plant promoters: an approach of structure and function. Mol Biotechnol 56:38–49
Potenza C, Aleman L, Sengupta-Gopalan C (2004) Targeting transgene expression in research, agricultural, and environmental applications: promoters used in plant transformation. In Vitro Cell Dev Biol – Plant 40:1–22
Shewmaker CK, Ridge NP, Pokalsky AR et al (1990) Nucleotide sequence of an EF-1 genomic clone from tomato. Nucleic Acids Res 18:4276
Sivamani E, Qu R (2006) Expression enhancement of a rice polyubiquitin gene promoter. Plant Mol Biol 60:225–239
Stark K, Kirk DL, Schmitt R (2001) Two enhancers and one silencer located in the introns of regA control somatic cell differentiation in Volvox carteri. Genes Dev 15:1449–1460
Suhandono S, Hughes J, Brown K, Hughes MA (2001) Expression and structure of an elongation factor-1a gene (MeEF1) from cassava (Manihot esculenta Crantz). Euphytica 120:49–58
Verdaguer B, De Kochko A, Fux CI et al (1998) Functional organization of the cassava vein mosaic virus (CsVMV) promoter. Plant Mol Biol 37:1055–1067
Viana AA, Fragoso RR, Guimarães LM et al (2011) Isolation and functional characterization of a cotton ubiquitination-related promoter and 5′UTR that drives high levels of expression in root and flower tissues. BMC Biotechnol 11:115
Vijaybhaskar V, Subbiah V, Kaur J, Vijayakumari P, Siddiqi I et al (2008) Identification of a root-specific glycosyltransferase from Arabidopsis and characterization of its promoter. J Biosci 33:185–193
Wray GA, Hahn MW, Abouheif E, Balhoff JP, Pizer M, Rockman MV, Romano LA et al (2003) The evolution of transcriptional regulation in eukaryotes. Mol Biol Evol 20:1377–1419
Yamamoto YY, Yoshioka Y, Hyakumachi M et al (2011) Characteristics of core promoter types with respect to gene structure and expression in Arabidopsis thaliana. DNA Res 18:333–342
Zhang N, McHale LK, Finer JJ (2015) Isolation and characterization of “GmScream” promoters that regulate highly expressing soybean (Glycine max Merr.) genes. Plant Sci 241:189–198
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LE received financial support in the form of a fellowship from Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP). Financial support was also provided by Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq).
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Editor: Jianxin Chen
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Corte, L.ED., Mendes, B.M.J., Filho, F.A.A.M. et al. Functional characterization of full-length and 5′ deletion fragments of Citrus sinensis-derived constitutive promoters in Nicotiana benthamiana. In Vitro Cell.Dev.Biol.-Plant 56, 280–289 (2020). https://doi.org/10.1007/s11627-019-10044-0
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DOI: https://doi.org/10.1007/s11627-019-10044-0