We propose a shift from the traditional view of protein ortholog groups as hard-clusters to soft-clusters and we study the MinDRPGT problem under this ...
Current gene phylogeny reconstruction methods make use of a single protein product per gene, ignoring information on alternative protein isoforms. These methods ...
Protein2GeneTree is a gene tree correction method that takes as input a protein tree and a species tree, and build an optimal gene tree.
Oct 30, 2016 · Here, we propose a new approach for the reconstruction of accurate gene trees and protein trees accounting for the production of alternative ...
Missing: soft- clustering.
Reconstructing protein and gene phylogenies using reconciliation and soft-clustering. E Kuitche, M Lafond, A Ouangraoua. Journal of bioinformatics and ...
SuperProteinTree computes a super protein tree given a set of protein clusters. ####Reconstructing protein and gene phylogenies using reconciliation and ...
Reconstructing protein and gene phylogenies using reconciliation and soft-clustering. December 01, 2017. [ MEDLINE Abstract ]. Robustness versus evolvability ...
Reconstructing ancestral gene content using phylogenetic reconciliation. By “drawing” the gene tree into the species tree, phylogenetic reconciliation ...
DoubleRecViz: a web-based tool for visualizing transcript–gene–species ...
academic.oup.com › article
Oct 14, 2020 · We present DoubleRecViz, a web-based tool for visualizing double reconciliations between phylogenetic trees at three levels: transcript, gene and species.
Jul 3, 2017 · algorithms for the reconstruction of gene phylogenies and full sets of proteins phylogenies using reconciliation [4]. We present a model of ...