Nov 21, 2021 · The push-forward method is an approximate method, and its accuracy relies on the careful choice of the temporal and spatial step densities, ...

Sep 14, 2020 · In this paper we provide a more general simulation algorithm that works also for non-integrable systems. The method can be used for biochemical ...

Nov 21, 2021 · In this paper we provide a more general simulation algorithm that works also for non-integrable systems. The method can be used for biochemical simulations.

Dec 20, 2022 · Abstract. A biochemical network can be simulated by a set of ordinary differential equa- tions (ODE) under well stirred reactor conditions, ...

Abstract. A biochemical network can be simulated by a set of ordinary differential equa- tions (ODE) under well stirred reactor conditions, ...

Sep 14, 2020 · This work proposes several improved methods for computing time dependent multivariate probability distributions (MPD) of PDMP models of gene ...

•Extended the approach from gene network to general biochemical networks and piecewise deterministic Markov processes models.

A biochemical network can be simulated by a set of ordinary differential equations (ODE) under well stirred reactor conditions, for large numbers of molecules, ...

Time dependent stochastic mRNA and protein synthesis in piecewise-deterministic ... 2019. Push-forward method for piecewise deterministic biochemical simulations.

Apr 25, 2024 · Push-forward method for piecewise deterministic biochemical simulations. ... Effective Computational Methods for Hybrid Stochastic Gene Networks.