[PDF] From gene trees to species trees through a supertree approach
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Inferring a species tree from gene trees is mostly done in a two-step approach. ... Supertree methods combine source trees whose leaves are labeled with in-.
We propose a novel approach to tackle this problem, mainly to transform a collection of MUL trees into a collection of evolutionary trees, each containing ...
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This paper studies various algorithmic issues in reconstructing a species tree from gene trees under the duplication and the mutation costmodel.
This article reviews the various models that have been used to describe the relationships between gene trees and species trees.
We describe the use of reconciled trees to reconstruct the history of a gene tree with respect to a species tree.
Missing: Supertree Approach.
Aug 4, 2023 · You can measure the normalised Robinson-Foulds distance between the gene trees and the species tree. This is a standard metric for the topological distance ...
Missing: Supertree | Show results with:Supertree
In this paper, we propose a Bayesian hierarchical model to estimate the phylogeny of a group of species using multiple estimated gene tree distributions.
Missing: Supertree | Show results with:Supertree
Our Bayesian supertree method was also very successful in obtaining better estimates of gene trees, by reducing the uncertainty in their distributions. In ...
May 8, 2018 · ASTRAL is one of the leading methods for inferring species trees from gene trees while accounting for gene tree discordance. ASTRAL uses dynamic ...
We do this by extending the idea of Maximum Likelihood (ML) supertrees to a hierarchical Bayesian model where several sources of gene tree/species tree ...