Based on a dataset of experimentally confirmed interactions, we show that RNAplex in its present form is an useful tool to predict new sRNA targets. We further ...

Jul 15, 2011 · While accurate, these methods are too slow and memory-hungry to be employed in genome-wide RNA target scans.

A new approach for RNA-RNA interaction was developed, with a prediction accuracy that is similar to that of algorithms that explicitly consider intramolecular ...

Jun 14, 2011 · RNApredator is a freely available web server that facilitates the search for putative sRNA targets in bacterial genomes.

This is achieved by using a combination of precomputed accessibility profiles with an approximate energy model. This approach is implemented in the new version ...

In this paper we present a novel algorithm to accurately predict the minimum free energy structure of RNA-RNA interaction under the most general type of ...

This is achieved by using a combination of precomputed accessibility profiles with an approximate energy model. This approach is implemented in the new version ...

In this study, we developed DeepRaccess, which predicts RNA accessibility based on deep learning methods.

Sep 23, 2016 · The first experiment in interaction site prediction shows that RactIPAce achieves the best predictive performance on the newly compiled dataset ...

Jun 3, 2021 · We conclude that the accessibility concept to the minimum free energy approach to predicting novel RNA-RNA interactions has conceptual limitations.