For indexing similar strings whose alignment includes gaps, we first transform the given alignment ϒ into its right-justified form so that the characters in each α ˜ i + Δ i j ( 1 ≤ i ≤ r , 1 ≤ j ≤ m ) are right-justified.
Feb 1, 2018
Jun 13, 2016 · In this paper we propose the FM-index of alignment with gaps, a realistic index for similar strings, which allows gaps in their alignment. For ...
In this paper we propose the FM-index of alignment with gaps, a realistic index for similar strings, which allows gaps in their alignment. For this, we ...
The new suffix array of alignment enables us to support the LF-mapping and backward search, the key functionalities of the FM-index, regardless of gap existence ...
In this paper we propose the FM-index of alignment with gaps, a realistic index for similar strings, which allows gaps in their alignment. For this, we ...
FM-index of Alignment with Gaps · J. Na, Hyunjoon Kim, +5 authors. Kunsoo Park · Published in Theoretical Computer Science 13 June 2016 · Computer Science.
Recently, a compressed index for similar strings, called the FM-index of alignment (FMA), has been proposed with the functionalities of pattern search and ...
The new suffix array of alignment enables us to support the LF-mapping and backward search, the key functionalities of the FM-index, regardless of gap existence ...
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FM-index of Alignment with Gaps Joong Chae Naa , Hyunjoon Kimb , Seunghwan Minb , Heejin Parkc , Thierry Lecroqd,e , Martine Léonardd, Laurent Mouchardd,f, ...
Sep 3, 2024 · FM-index of alignment with gaps · Joong Chae Na · Hyunjoon Kim · Seunghwan Min · Heejin Park · Martine Léonard · Kunsoo Park. Fonction : Auteur.