Most current approaches to automatic pathway generation are based on a reverse engineering approach in which pathway plausibility is solely derived from ...
Aug 3, 2009 · In this paper, we present a novel pathway generation approach which combines insights from the reverse engineering and knowledge-based ...
Enhancing Automatic Biological Pathway Generation with GO ...
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In this paper, we present a novel pathway generation approach that combines insights from the reverse engineering and knowledge-based approaches to increase the ...
Enhancing automatic biological pathway generation with GO-based gene similarity. A Sanfilippo, B Baddeley, N Beagley, R Riensche, B Gopalan. 2009 ...
May 10, 2023 · We present a novel algorithm-aided protocol that overcomes these limitations and facilitates the continuous updating of highly curated GEMs.
Dec 12, 2022 · We propose an efficient pruning and post-processing technique that integrates both semantic similarity and hierarchical relations between the GO terms.
Enhancing automatic biological pathway generation with GO-based gene similarity. A Sanfilippo, B Baddeley, N Beagley, R Riensche, B Gopalan. 2009 ...
Mar 5, 2021 · Currently, gene set enrichment analysis (GSEA) is used to interpret which biological processes are associated with the phenotype of interest.
Enhancing Automatic Biological Pathway Generation with GO-Based Gene Similarity. Conference Paper. Jan 2009. Antonio Sanfilippo · Bob Baddeley ...
Aug 2, 2010 · We show how new relevant links between genes can be iteratively derived using a gene similarity measure based on the Gene Ontology that is ...