The multiple RNA structure comparison problem is NP-hard in its general formulation. We introduced a new problem for comparing multiple RNA structures. This ...

Using this substructure search algorithm, we present a fast algorithm that finds the largest common substructure of given multiple RNA structures in rab r a b ...

Jan 20, 2022 · Comparative sequence analysis, support vector machine, centroid method, and other algorithms in RNA secondary structure prediction algorithms ...

SETTER can be used both for the structural alignments of structures that are already known to be homologous, as well as for 3D structure similarity searches and ...

We present a strategy for structural motif-based dynamic alignment, namely, RNA secondary-structural motif-comparing (RNAsmc), to identify structural motifs.

Here we evaluate a number of RNA folding algorithms using reliable RNA data-sets and compare their relative performance.

May 18, 2012 · In this article, a novel pairwise RNA comparison method (SEcondary sTructure-based TERtiary Structure Similarity Algorithm) SETTER is proposed.

Aug 26, 2021 · In this review, we provide a comprehensive overview of RNA secondary structure prediction methods based on ML technologies and a tabularized summary of the ...

In this article a novel algorithm for an RNA structural comparison SETTER (SEcondary sTructure-based TERtiary Structure Similarity Algorithm) is introduced.

Feb 11, 2021 · We can efficiently calculate an optimal secondary structure that has the minimum free energy using a dynamic programming (DP) technique, the ...