ABSTRACT. De novo genome assembly is one of the most important and chal- lenging computational problems in modern genomics; further, it.
In this work, we introduce MerBench, a compact set of PGAS benchmarks that capture the communication patterns of the parallel algorithms throughout HipMer, a ...
In this work, we introduce MerBench, a compact set of PGAS benchmarks that capture the communication patterns of the parallel algorithms throughout HipMer, a ...
Bibliographic details on MerBench: PGAS Benchmarks for High Performance Genome Assembly.
A compact set of PGAS benchmarks that capture the communication patterns of the parallel algorithms throughout HipMer, a parallel genome assembler pipeline.
These microbenchmarks were originally developed by Evangelos Georganas to analyze the communication patterns in a high-performance de novo genome assembly ...
"MerBench: PGAS Benchmarks for High Performance Genome Assembly". Evangelos Georganas, Marquita Ellis, Rob Egan, Steven Hofmeyr, Aydın Buluç, Brandon Cook ...
2014. Miscellaneous. K. A. Yelick and M. Ellis, "merBench: PGAS Benchmarks for High Performance Genome Assembly," 2017.
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Nov 12, 2017 · MerBench: PGAS Benchmarks for High Performance Genome Assembly · Abstract · View online with eReader · PDF.
This work focuses on the highly scalable HipMer assembler and identifies the dominant algorithms and communication patterns, also using microbenchmarks to ...