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1. WSITools WSITools Public

   Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.

   Python 56 16

2. TumorStromaReaction TumorStromaReaction Public

   Quantitatively evaluate tumor stroma reaction within ovarian cancers, and establish assocaitaions to prognosis, molecular signatures.

   Python 2

3. CellularComposition CellularComposition Public

   Interactive modules to digitally annotate H&E whole slide images, construct cell and tissue level features and classify cell types. Specifically for a case study of differentiating borderline and h…

   Python 5 1

4. WSIPenMarkingRemoval WSIPenMarkingRemoval Public

   Remove pen-marking annotations on whole slide images(WSIs) for data achiving.

   Python 18 1

5. Re-stained_WSIs_Registration Re-stained_WSIs_Registration Public

   Re-stained whole slide image alignment

   Python 35 10

6. MxIF_DAPI_ref_QC MxIF_DAPI_ref_QC Public

   MxIF image quality checking

   Python 2