Verify latest release

• I verified that the issue exists in the latest pnpm release

pnpm version

v10.6.1

Which area(s) of pnpm are affected? (leave empty if unsure)

No response

Link to the code that reproduces this issue or a replay of the bug

https://github.com/ntnyq-dev/repro-pnpm-ignore-peer-deps-missing

Reproduction steps

Steps

• run pnpm install

There is no error message about missing dependency vuepress

• migrate pnpm field content in package.json to pnpm-workspace.yaml
• cleanup node_modules and re-run pnpm install

You will get

 WARN  Issues with peer dependencies found
.
└─┬ vuepress-plugin-iconify 0.7.0
  └── ✕ missing peer vuepress@^2.0.0-rc.15
Peer dependencies that should be installed:
  vuepress@^2.0.0-rc.15

Describe the Bug

peerDependencyRules.ignoreMissing in pnpm-workspace.yaml not works

Expected Behavior

peerDependencyRules.ignoreMissing in pnpm-workspace.yaml works as defined in package.json

Which Node.js version are you using?

v22.14.0

Which operating systems have you used?

• macOS
• Windows
• Linux

If your OS is a Linux based, which one it is? (Include the version if relevant)

No response