latchbio-nfcore
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ampliseq
ampliseq PublicForked from nf-core/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Nextflow 1
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methylseq
methylseq PublicForked from nf-core/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Nextflow 1
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fetchngs
fetchngs PublicForked from nf-core/fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
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sarek
sarek PublicForked from nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow
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chipseq
chipseq PublicForked from nf-core/chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
Nextflow
Repositories
- rnaseq Public Forked from nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
latchbio-nfcore/rnaseq’s past year of commit activity - nanostring Public Forked from nf-core/nanostring
An analysis pipeline for Nanostring nCounter expression data.
latchbio-nfcore/nanostring’s past year of commit activity - fetchngs Public Forked from nf-core/fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
latchbio-nfcore/fetchngs’s past year of commit activity - cutandrun Public Forked from nf-core/cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
latchbio-nfcore/cutandrun’s past year of commit activity - sarek Public Forked from nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
latchbio-nfcore/sarek’s past year of commit activity - funcscan Public Forked from nf-core/funcscan
(Meta-)genome screening for functional and natural product gene sequences
latchbio-nfcore/funcscan’s past year of commit activity - circrna Public Forked from nf-core/circrna
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
latchbio-nfcore/circrna’s past year of commit activity - crisprseq Public Forked from nf-core/crisprseq
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
latchbio-nfcore/crisprseq’s past year of commit activity
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