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Incompatible numpy & tensorflow & miscnn #26

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sensiang705 opened this issue Jun 23, 2021 · 3 comments
Open

Incompatible numpy & tensorflow & miscnn #26

sensiang705 opened this issue Jun 23, 2021 · 3 comments
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@muellerdo
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@sensiang705
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The contradictory required version of numpy & miscnn, numpy & tensorflow made it impossible to run the code. Furthermore, NIFTI_interface is not defined. I managed to get into the source code but can't debug it due to lack of software coding knowledge.
@muellerdo
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muellerdo commented Jun 23, 2021 •
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Hey @sensiang705,

could you elaborate a little bit what exactly is not working.

The current version of this repository should be fully reproducible with the provided MIScnn & Tensorflow version defined in requirements.txt as well as the training/inference with any newer version of MIScnn & Tensorflow.
MIScnn or Tensorflow should also be able to run with any newer NumPy version.

The NIfTI Interface is provided in the MIScnn package.

I highly suspect that your installation process of MIScnn, Tensorflow or NumPy was not correctly performed.

Please validate your installation and elaborate a bit more on the issues on your side for more efficient support.

Cheers,
Dominik

@muellerdo muellerdo self-assigned this Jun 23, 2021
@muellerdo muellerdo added the bug Something isn't working label Jun 23, 2021
@Saqueeb
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Saqueeb commented Jul 13, 2021

Hey there,
I am facing the same problem, the requirements.txt file is not running the way it supposed to.

ERROR: Cannot install -r requirements.txt (line 4) and tensorflow==2.3.0 because these package versions have conflicting dependencies.

The conflict is caused by:
The user requested tensorflow==2.3.0
miscnn 1.1.9 depends on tensorflow==2.4.0

How to resolve this?

@muellerdo
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Hey @Saqueeb,

thanks for pointing this out. I incremented the Tensorflow version to avoid dependency conflicts.
But you should be able to use any tensorflow version over 2.1 to get it running.

Fix: 8a7c9d6

Cheers,
Dominik

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@muellerdo @Saqueeb @sensiang705