Repositories list

• reichlab.github.io

  Public
  The website for the Reich Lab @ UMass-Amherst.

  HTML

  •

  Apache License 2.0

  •48•17•6•0•Updated Oct 22, 2025Oct 22, 2025

• idmodels

  Public
  Infectious disease models in Python

  Python

  •

  MIT License

  •0•4•1•2•Updated Oct 21, 2025Oct 21, 2025

• variant-nowcast-hub

  Public
  A repository to store COVID-19 variant nowcasts collected as a modeling hub.

  R

  •

  MIT License

  •14•19•7•8•Updated Oct 21, 2025Oct 21, 2025

• iddata

  Public
  Python module for accessing infectious disease data

  Python

  •

  MIT License

  •0•1•4•0•Updated Oct 20, 2025Oct 20, 2025

• reporule

  Public
  CLI for standardizing repo rulesets for a GitHub org or user

  Python

  •

  MIT License

  •0•2•0•4•Updated Oct 20, 2025Oct 20, 2025

• cladetime

  Public
  Python interface for accessing Nextstrain SARS-CoV-2 sequence and clade data

  Python

  •

  MIT License

  •2•6•5•3•Updated Oct 20, 2025Oct 20, 2025

• sarix

  Public
  Seasonal Auto-Regressive Integrated models with eXogenous predictors

  Jupyter Notebook

  •

  MIT License

  •2•0•1•0•Updated Oct 16, 2025Oct 16, 2025

• flusight-dashboard

  Public
  Dashboard for CDC's FluSight prediction exercise.

  Creative Commons Zero v1.0 Universal

  •4•1•0•0•Updated Oct 16, 2025Oct 16, 2025

• sismid-ili-forecasting-dashboard

  Public
  The dashboard repo for SISMID ILI forecasting project

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Oct 16, 2025Oct 16, 2025

• forecast-sandbox-2025-2026-dashboard

  Public
  Dashboard repo for 2025/2026 forecast sandbox

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Oct 16, 2025Oct 16, 2025

• metrocast-dashboard

  Public
  Dashboard website for the epiENGAGE Flu Metrocast Hub.

  Creative Commons Zero v1.0 Universal

  •2•0•0•0•Updated Oct 16, 2025Oct 16, 2025

• variant-nowcast-hub-dashboard

  Public
  Dashboard pages and analyses for the US SARS-CoV-2 Variant Nowcast Hub

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •0•0•4•0•Updated Oct 16, 2025Oct 16, 2025

• decisions

  Public
  A public record of decisions made for lab projects

  HTML

  •

  The Unlicense

  •0•1•1•0•Updated Oct 15, 2025Oct 15, 2025

• cdcgov-covid19-forecast-hub

  Public
  A repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions.

  R

  •

  Apache License 2.0

  •26•0•0•0•Updated Oct 15, 2025Oct 15, 2025

• forecast-sandbox-2025-2026

  Public
  Sandbox for models and forecasts for the 2025/2026 forecasting season

  Python

  •

  MIT License

  •0•1•1•1•Updated Oct 15, 2025Oct 15, 2025

• operational-models

  Public
  Repository for automating runs of operational disease forecasting models.

  R

  •

  MIT License

  •1•1•3•0•Updated Oct 8, 2025Oct 8, 2025

• flusight-dashboard-staging

  Public
  Staging version of flusight-dashboard -- used to demo updates

  Creative Commons Zero v1.0 Universal

  •4•0•0•0•Updated Sep 25, 2025Sep 25, 2025

• covidhub-dashboard

  Public
  Dashboard for the CDC's COVID-19 Forecast Hub

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

• rsv-forecast-hub

  Public
  A repository run by the Centers for Disease Control and Prevention (CDC) to collect forecasts of weekly incident respiratory syncytial virus (RSV) hospitalizations.

  Apache License 2.0

  •3•0•0•0•Updated Sep 9, 2025Sep 9, 2025

• predtimechart

  Public
  JavaScript

  •

  MIT License

  •1•1•25•0•Updated Sep 8, 2025Sep 8, 2025

• variant-nowcast-model-dev-retro

  Public
  Retrospective model dev for UMass models for variant-nowcast-hub

  R

  •

  MIT License

  •0•2•3•1•Updated Aug 27, 2025Aug 27, 2025

• covid19-forecast-hub-web-1

  Public
  Source for the COVID 19 forecast hub website

  HTML

  •

  Other

  •11•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• sismid-ili-forecasting-sandbox

  Public
  A hubverse-style repository for collecting forecasts of influenza-like illness

  R

  •

  MIT License

  •18•0•0•2•Updated Jul 21, 2025Jul 21, 2025

• FluSight-ILI-template-dashboard

  Public template
  A template dashboard repo to support the FluSight ILI sandbox hub

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jul 12, 2025Jul 12, 2025

• FluSight-ILI-template-hub

  Public template
  Template repository containing a subset of FluSight ILI forecasts and target data, set up in the hubverse format. Can be cloned for usage as a sandbox hub that accepts retrospective forecasts for any of the provided seasons.

  R

  •

  MIT License

  •0•0•2•0•Updated Jul 12, 2025Jul 12, 2025

• predictability

  Public
  MIT License

  •0•1•0•1•Updated Jun 20, 2025Jun 20, 2025

• flu-metrocast

  Public
  Short-term forecasts for influenza at the city- and county-level

  R

  •

  MIT License

  •4•3•4•1•Updated May 29, 2025May 29, 2025

• FluSight-forecast-hub

  Public
  FluSight-forecast-hub fork for cloud onboarding

  R

  •

  MIT License

  •86•0•0•0•Updated May 28, 2025May 28, 2025

• reichlab-utils

  Public archive
  Script to standardize permissions and branch settings for Reichlab repos

  Python

  •

  MIT License

  •1•0•0•0•Updated May 1, 2025May 1, 2025

• get-covid-clade-counts

  Public
  Create virus clade count data and save to an S3 Bucket using functionality from virus-clade-utils

  Python

  •

  MIT License

  •0•0•5•1•Updated Apr 14, 2025Apr 14, 2025