Repositories list

• fieldtrip

  Public
  The MATLAB toolbox for MEG, EEG and iEEG analysis

  MATLAB

  •

  GNU General Public License v3.0

  •756•0•0•0•Updated Oct 23, 2025Oct 23, 2025

• PALM

  Public
  PALM: Permutation Analysis of Linear Models

  MATLAB

  •30•0•0•0•Updated Oct 20, 2025Oct 20, 2025

• conn

  Public
  CONN toolbox, development version (conn-toolbox.org)

  MATLAB

  •18•0•0•0•Updated Oct 4, 2025Oct 4, 2025

• rsHRF

  Public
  rsHRF: A Toolbox for Resting State HRF Deconvolution and Connectivity Analysis (MATLAB)

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •15•0•0•0•Updated Sep 15, 2025Sep 15, 2025

• BrainNet-Viewer

  Public
  BrainNet Viewer is a brain network visualization tool, which can help researchers to visualize structural and functional connectivity patterns from different levels in a quick, easy, and flexible way.

  MATLAB

  •

  GNU General Public License v3.0

  •16•0•0•0•Updated Sep 15, 2025Sep 15, 2025

• hMRI-toolbox

  Public
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)

  MATLAB

  •

  GNU General Public License v2.0

  •44•0•0•0•Updated Aug 25, 2025Aug 25, 2025

• tapas

  Public
  TAPAS - Translational Algorithms for Psychiatry-Advancing Science

  MATLAB

  •

  GNU General Public License v3.0

  •95•0•0•0•Updated Jun 5, 2025Jun 5, 2025

• gift

  Public
  Group ICA/IVA software (MATLAB)

  MATLAB

  •45•0•0•1•Updated May 28, 2025May 28, 2025

• DPABI

  Public
  DPABI: a toolbox for Data Processing & Analysis of Brain Imaging

  MATLAB

  •

  GNU Lesser General Public License v2.1

  •45•0•0•0•Updated Apr 29, 2025Apr 29, 2025

• cat12

  Public
  Computational Anatomy Toolbox for SPM12

  MATLAB

  •

  GNU General Public License v2.0

  •8•0•0•0•Updated Apr 10, 2025Apr 10, 2025

• marsbar

  Public
  MarsBaR region of interest toolbox for SPM

  MATLAB

  •7•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• automaticanalysis

  Public
  Automatic Analysis (aa)

  MATLAB

  •

  MIT License

  •37•0•0•0•Updated Nov 16, 2024Nov 16, 2024

• CTseg

  Public
  Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.

  MATLAB

  •

  GNU General Public License v3.0

  •16•0•0•0•Updated Jul 28, 2024Jul 28, 2024

• leaddbs

  Public
  Lead-DBS is a scientific toolbox facilitating deep brain stimulation electrode locations and connectomic imaging.

  MATLAB

  •

  Other

  •108•0•0•1•Updated Feb 13, 2024Feb 13, 2024

• suit

  Public
  Toolbox for the analysis of cerebellar imaging data

  MATLAB

  •13•0•0•0•Updated Jan 14, 2024Jan 14, 2024

• ExploreASL

  Public
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.mutsaerts@amsterdamumc.nl. Development details can be found under the wiki tab. Code documentation can be found on the documentation website https://exploreasl.github.io/Documentation

  MATLAB

  •

  Other

  •13•0•0•0•Updated Sep 7, 2023Sep 7, 2023

• .github

  Public
  SPM Toolboxes organisation's profile

  toolboxspm

  0•0•0•0•Updated May 3, 2023May 3, 2023

• SnPM-devel

  Public
  Statistical NonParametric Mapping, development version

  MATLAB

  •

  GNU General Public License v3.0

  •10•0•0•0•Updated Mar 10, 2022Mar 10, 2022

• SPMd

  Public
  SPMd: Statistical Parametric Mapping Diagnosis

  MATLAB

  •

  GNU General Public License v2.0

  •2•0•0•0•Updated Nov 17, 2021Nov 17, 2021

• SwE-toolbox

  Public
  SwE toolbox

  MATLAB

  •

  GNU General Public License v2.0

  •7•0•0•0•Updated Jun 14, 2021Jun 14, 2021

• Clinical

  Public
  Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)

  MATLAB

  •

  BSD 2-Clause "Simplified" License

  •12•0•0•0•Updated May 19, 2021May 19, 2021

• ArtRepair

  Public
  ArtRepair for robust fMRI

  MATLAB

  •2•0•0•0•Updated Nov 12, 2019Nov 12, 2019

• jubrain-anatomy-toolbox

  Public
  JuBrain Anatomy Toolbox

  MATLAB

  •6•0•0•0•Updated Jun 17, 2019Jun 17, 2019

• MRM

  Public
  Multivariate and Repeated Measures for Neuroimaging

  MATLAB

  •6•0•0•0•Updated May 21, 2019May 21, 2019

• spmmouse

  Public
  SPMMouse ongoing maintenance effort

  MATLAB

  •2•0•0•0•Updated May 13, 2015May 13, 2015