Europe PMC
Nothing Special   »   [go: up one dir, main page]

Europe PMC requires Javascript to function effectively.

Either your web browser doesn't support Javascript or it is currently turned off. In the latter case, please turn on Javascript support in your web browser and reload this page.

This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our privacy notice and cookie policy.

Abstract 


Sulfolobus solfataricus is a hyperthermophilic archaeon growing optimally at 80-85 degrees C. It metabolizes glucose via a novel non-phosphorylated Entner-Doudoroff pathway, in which the reversible C(6) to C(3) aldol cleavage is catalysed by 2-keto-3-deoxygluconate aldolase (KDG-aldolase), generating pyruvate and glyceraldehyde. Given the ability of such a hyperstable enzyme to catalyse carbon-carbon-bond synthesis with non-phosphorylated metabolites, we report here the cloning and sequencing of the S. solfataricus gene encoding KDG-aldolase, and its expression in Escherichia coli to give fully active enzyme. The recombinant enzyme was purified in a simple two-step procedure, and shown to possess kinetic properties indistinguishable from the enzyme purified from S. solfataricus cells. The KDG-aldolase is a thermostable tetrameric protein with a half-life at 100 degrees C of 2.5 h, and is equally active with both d- and l-glyceraldehyde. It exhibits sequence similarity to the N-acetylneuraminate lyase superfamily of Schiff-base-dependent aldolases, dehydratases and decarboxylases, and evidence is presented for a similar catalytic mechanism for the archaeal enzyme by substrate-dependent inactivation by reduction with NaBH(4).

Free full text 


Logo of biochemjLink to Publisher's site
Biochem J. 1999 Nov 1; 343(Pt 3): 563–570.
PMCID: PMC1220587
PMID: 10527934

An extremely thermostable aldolase from Sulfolobus solfataricus with specificity for non-phosphorylated substrates.

Abstract

Sulfolobus solfataricus is a hyperthermophilic archaeon growing optimally at 80-85 degrees C. It metabolizes glucose via a novel non-phosphorylated Entner-Doudoroff pathway, in which the reversible C(6) to C(3) aldol cleavage is catalysed by 2-keto-3-deoxygluconate aldolase (KDG-aldolase), generating pyruvate and glyceraldehyde. Given the ability of such a hyperstable enzyme to catalyse carbon-carbon-bond synthesis with non-phosphorylated metabolites, we report here the cloning and sequencing of the S. solfataricus gene encoding KDG-aldolase, and its expression in Escherichia coli to give fully active enzyme. The recombinant enzyme was purified in a simple two-step procedure, and shown to possess kinetic properties indistinguishable from the enzyme purified from S. solfataricus cells. The KDG-aldolase is a thermostable tetrameric protein with a half-life at 100 degrees C of 2.5 h, and is equally active with both d- and l-glyceraldehyde. It exhibits sequence similarity to the N-acetylneuraminate lyase superfamily of Schiff-base-dependent aldolases, dehydratases and decarboxylases, and evidence is presented for a similar catalytic mechanism for the archaeal enzyme by substrate-dependent inactivation by reduction with NaBH(4).

Full Text
The Full Text of this article is available as a PDF (173K).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
  • Grogan DW. Phenotypic characterization of the archaebacterial genus Sulfolobus: comparison of five wild-type strains. J Bacteriol. 1989 Dec;171(12):6710–6719. [Europe PMC free article] [Abstract] [Google Scholar]
  • De Rosa M, Gambacorta A, Nicolaus B, Giardina P, Poerio E, Buonocore V. Glucose metabolism in the extreme thermoacidophilic archaebacterium Sulfolobus solfataricus. Biochem J. 1984 Dec 1;224(2):407–414. [Europe PMC free article] [Abstract] [Google Scholar]
  • Selig M, Xavier KB, Santos H, Schönheit P. Comparative analysis of Embden-Meyerhof and Entner-Doudoroff glycolytic pathways in hyperthermophilic archaea and the bacterium Thermotoga. Arch Microbiol. 1997 Apr;167(4):217–232. [Abstract] [Google Scholar]
  • Laemmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. [Abstract] [Google Scholar]
  • Skoza L, Mohos S. Stable thiobarbituric acid chromophore with dimethyl sulphoxide. Application to sialic acid assay in analytical de-O-acetylation. Biochem J. 1976 Dec 1;159(3):457–462. [Europe PMC free article] [Abstract] [Google Scholar]
  • Gottschalk G, Bender R. D-Gluconate dehydratase from Clostridium pasteurianum. Methods Enzymol. 1982;90(Pt E):283–287. [Abstract] [Google Scholar]
  • Connaris H, West SM, Hough DW, Danson MJ. Cloning and overexpression in Escherichia coli of the gene encoding citrate synthase from the hyperthermophilic Archaeon Sulfolobus solfataricus. Extremophiles. 1998 May;2(2):61–66. [Abstract] [Google Scholar]
  • Sanger F, Nicklen S, Coulson AR. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. [Europe PMC free article] [Abstract] [Google Scholar]
  • Johnson ML, Correia JJ, Yphantis DA, Halvorson HR. Analysis of data from the analytical ultracentrifuge by nonlinear least-squares techniques. Biophys J. 1981 Dec;36(3):575–588. [Europe PMC free article] [Abstract] [Google Scholar]
  • Aisaka K, Igarashi A, Yamaguchi K, Uwajima T. Purification, crystallization and characterization of N-acetylneuraminate lyase from Escherichia coli. Biochem J. 1991 Jun 1;276(Pt 2):541–546. [Europe PMC free article] [Abstract] [Google Scholar]
  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990 Oct 5;215(3):403–410. [Abstract] [Google Scholar]
  • Izard T, Lawrence MC, Malby RL, Lilley GG, Colman PM. The three-dimensional structure of N-acetylneuraminate lyase from Escherichia coli. Structure. 1994 May 15;2(5):361–369. [Abstract] [Google Scholar]
  • Babbitt PC, Gerlt JA. Understanding enzyme superfamilies. Chemistry As the fundamental determinant in the evolution of new catalytic activities. J Biol Chem. 1997 Dec 5;272(49):30591–30594. [Abstract] [Google Scholar]
  • Lawrence MC, Barbosa JA, Smith BJ, Hall NE, Pilling PA, Ooi HC, Marcuccio SM. Structure and mechanism of a sub-family of enzymes related to N-acetylneuraminate lyase. J Mol Biol. 1997 Feb 21;266(2):381–399. [Abstract] [Google Scholar]
  • Takayama S, McGarvey GJ, Wong CH. Microbial aldolases and transketolases: new biocatalytic approaches to simple and complex sugars. Annu Rev Microbiol. 1997;51:285–310. [Abstract] [Google Scholar]
  • Fessner WD. Enzyme mediated C-C bond formation. Curr Opin Chem Biol. 1998 Feb;2(1):85–97. [Abstract] [Google Scholar]
  • Uchida Y, Tsukada Y, Sugimori T. Purification and properties of N-acetylneuraminate lyase from Escherichia coli. J Biochem. 1984 Aug;96(2):507–522. [Abstract] [Google Scholar]
  • Mahmoudian M, Noble D, Drake CS, Middleton RF, Montgomery DS, Piercey JE, Ramlakhan D, Todd M, Dawson MJ. An efficient process for production of N-acetylneuraminic acid using N-acetylneuraminic acid aldolase. Enzyme Microb Technol. 1997 Apr;20(5):393–400. [Abstract] [Google Scholar]
  • Hough DW, Danson MJ. Extremozymes. Curr Opin Chem Biol. 1999 Feb;3(1):39–46. [Abstract] [Google Scholar]
  • Thomas TM, Scopes RK. The effects of temperature on the kinetics and stability of mesophilic and thermophilic 3-phosphoglycerate kinases. Biochem J. 1998 Mar 15;330(Pt 3):1087–1095. [Europe PMC free article] [Abstract] [Google Scholar]
  • Mavridis IM, Hatada MH, Tulinsky A, Lebioda L. Structure of 2-keto-3-deoxy-6-phosphogluconate aldolase at 2 . 8 A resolution. J Mol Biol. 1982 Dec 5;162(2):419–444. [Abstract] [Google Scholar]
  • Higgins DG, Sharp PM. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene. 1988 Dec 15;73(1):237–244. [Abstract] [Google Scholar]
  • Eisenthal R, Cornish-Bowden A. The direct linear plot. A new graphical procedure for estimating enzyme kinetic parameters. Biochem J. 1974 Jun;139(3):715–720. [Europe PMC free article] [Abstract] [Google Scholar]

Articles from Biochemical Journal are provided here courtesy of The Biochemical Society

Citations & impact 


Impact metrics

Jump to Citations
Jump to Data

Citations of article over time

Alternative metrics

Altmetric item for https://www.altmetric.com/details/5645485
Altmetric
Discover the attention surrounding your research
https://www.altmetric.com/details/5645485

Article citations


Go to all (67) article citations

Data 


Data behind the article

This data has been text mined from the article, or deposited into data resources.