Recent advances in paleogenomic technologies have enabled an increasingly detailed understanding of the evolutionary relationships of now-extinct mammalian taxa. However, a number of enigmatic Quaternary species have never been characterized with molecular data, often because available fossils are rare or are found in environments that are not optimal for DNA preservation. Here, we analyze paleogenomic data extracted from bones attributed to the late Pleistocene western camel, Camelops cf. hesternus, a species that was distributed across central and western North America until its extinction approximately 13,000 years ago. Despite a modal sequence length of only around 35 base pairs, we reconstructed high-coverage complete mitochondrial genomes and low-coverage partial nuclear genomes for each specimen. We find that Camelops is sister to African and Asian bactrian and dromedary camels, to the exclusion of South American camelids (llamas, guanacos, alpacas, and vicuñas). These results contradict previous morphology-based phylogenetic models for Camelops, which suggest instead a closer relationship between Camelops and the South American camelids. The molecular data imply a Late Miocene divergence of the Camelops clade from lineages that separately gave rise to the extant camels of Eurasia. Our results demonstrate the increasing capacity of modern paleogenomic methods to resolve evolutionary relationships among distantly related lineages.

High-entropy ceramics have potential to improve the mechanical properties and high-temperature stability over traditional ceramics, and high entropy nitrides and carbonitrides (HENs and HECNs) are particularly attractive for high temperature and high hardness applications. The synthesis of 5 bulk HENs and 4 bulk HECNs forming single-phase materials is reported herein among 11 samples prepared. The hardness of HENs and HECNs increased by an average of 22% and 39%, respectively, over the rule-of-mixtures average of their monocarbide and mononitride precursors. Similarly, elastic modulus values increased by an average of 17% in nitrides and 31% in carbonitrides over their rule-of-mixtures values. The enhancement in mechanical properties is tied to an increase in the configurational entropy and a decrease in the valence electron concentration, providing parameters for tuning mechanical properties of high-entropy ceramics.

A realistic wave optics simulation method has been developed to study how wavefront distortions originating from heat load deformations can be corrected using adaptive X-ray optics. Several planned soft X-ray and tender X-ray insertion-device beamlines in the Advanced Light Source upgrade rely on a common design principle. A flat, first mirror intercepts the white beam; vertical focusing is provided by a variable-line-space monochromator; and horizontal focusing comes from a single, pre-figured, adaptive mirror. A variety of scenarios to cope with thermal distortion in the first mirror are studied by finite-element analysis. The degradation of the intensity distribution at the focal plane is analyzed and the adaptive optics that correct it is modeled. The range of correctable wavefront errors across the operating range of the beamlines is reported in terms of mirror curvature and spatial frequencies. The software developed is a one-dimensional wavefront propagation package made available in the OASYS suite, an adaptable, customizable and efficient beamline modeling platform.

A growing awareness of the diversity and ubiquity of microbes (eukaryotes, prokaryotes, and viruses) associated with larger 'host' organisms has led to the realisation that many diseases thought to be caused by one primary agent are the result of interactions between multiple taxa and the host. Even where a primary agent can be identified, its effect is often moderated by other symbionts. Therefore, the one pathogen-one disease paradigm is shifting towards the pathobiome concept, integrating the interaction of multiple symbionts, host, and environment in a new understanding of disease aetiology. Taxonomically, pathobiomes are variable across host species, ecology, tissue type, and time. Therefore, a more functionally driven understanding of pathobiotic systems is necessary, based on gene expression, metabolic interactions, and ecological processes.

Dietary protein provides essential amino acids (EAAs) for the synthesis of new proteins plus an array of other metabolic functions; many of these functions are sensitive to postprandial plasma and intracellular amino acid concentrations. Recent research has focused on amino acids as metabolic signals that influence the rate of protein synthesis, inflammation responses, mitochondrial activity, and satiety, exerting their influence through signaling systems including mammalian/mechanistic target of rapamycin complex 1 (mTORC1), general control nonrepressed 2 (GCN2), glucagon-like peptide 1 (GLP-1), peptide YY (PYY), serotonin, and insulin. These signals represent meal-based responses to dietary protein. The best characterized of these signals is the leucine-induced activation of mTORC1, which leads to the stimulation of skeletal muscle protein synthesis after ingestion of a meal that contains protein. The response of this metabolic pathway to dietary protein (i.e., meal threshold) declines with advancing age or reduced physical activity. Current dietary recommendations for protein are focused on total daily intake of 0.8 g/kg body weight, but new research suggests daily needs for older adults of ≥1.0 g/kg and identifies anabolic and metabolic benefits to consuming at least 20-30 g protein at a given meal. Resistance exercise appears to increase the efficiency of EAA use for muscle anabolism and to lower the meal threshold for stimulation of protein synthesis. Applying this information to a typical 3-meal-a-day dietary plan results in protein intakes that are well within the guidelines of the Dietary Reference Intakes for acceptable macronutrient intakes. The meal threshold concept for dietary protein emphasizes a need for redistribution of dietary protein for optimum metabolic health.

A partial skeleton of a bison was recovered during residential house construction in Whitehorse, Yukon, Canada. The specimen represents a young (estimated 6 year old) bison individual that died, was partially scavenged by carnivores, and subsequently buried by calcareous silt sediment in a pond or small lake during the middle Holocene, ~5400 years ago. Palaeoenvironmental data, including molluscs, pollen, vascular plant, and bryophyte macrofossils demonstrate that the small waterbody was surrounded by white spruce dominated boreal forest. Morphometric analysis of the skeleton reveals that its taxonomic affinity is ambiguous, likely owing to it representing an ontogenetically young individual, though it does share some cranial and horn core characteristics of named species such as Bison occidentalis or Bison priscus. Mitochondrial genomic data confirm that this bison belongs to Clade 2A (northern clade), which represents Pleistocene steppe bison (B. cf. priscus) in Beringia through the Holocene and is not represented in living bison species. These data further demonstrate that northern steppe bison population survived the late Pleistocene extinction event, persisted locally in southern Yukon into the Holocene, and are best characterized as a species with a high degree of morphological variability and ecological flexibility.

Introduction

Older military veterans often present with unique and complex risk factors for Alzheimer's disease (AD) and related dementias. Increasing veteran participation in research studies offers one avenue to advance the field and improve health outcomes.

Methods

To this end, the National Institute on Aging (NIA) and Department of Veterans Affairs (VA) partnered to build infrastructure, improve collaboration, and intensify targeted recruitment of veterans. This initiative, INviting Veterans InTo Enrollment in Alzheimer's Disease Research Centers (INVITE-ADRC), provided funding for five sites and cross-site organizing structure. Diverse and innovative recruitment strategies were used.

Results

Across five sites, 172 veterans entered registries, and 99 were enrolled into ADRC studies. Of the enrolled, 39 were veterans from historically underrepresented racial and ethnic groups.

Conclusions

This initiative laid the groundwork to establish sustainable relationships between the VA and ADRCs. The partnership between both federal agencies demonstrates how mutual interests can accelerate progress. In turn, efforts can help our aging veterans.

The thorough realization of the advantages of the new generation x-ray light sources, such as the Upgraded Advanced Light Source (ALS-U) under construction, requires near-perfect x-ray optics, capable of delivering light without significant degradation of brightness and coherence. The stringent requirements of beamline optics drive the state of the art in ex situ optical metrology. Here, we present the results of the ongoing efforts at the ALS X-Ray Optics Laboratory to develop a new generation long trace profiler, LTP-2020. We discuss the system design that incorporates different types of surface slope sensors. In addition to the classical pencil beam interferometry (PBI) sensor with an improved optical design, we develop a deflectometry sensor based on a customized electronic autocollimator (AC). By applying a new data processing algorithm to the AC raw image data available from the customized AC, we significantly reduce the quasi-periodic systematic error of the AC equipped with a small size aperture. We also treat the possibility to use the AC as a PBI sensor with external light beam sources based on super-luminescent emitting diode (SLED) and single-mode laser diode (SMLD). Operation modes with stationary and/or translated sensors are possible due to the two-carriage gantry system with adjustable vertical position. The variety of the available operation modes allows optimization of the LTP-2020 experimental arrangement for providing the best possible performance in measurements with state-of-the-art aspherical x-ray optics, variable-line-spacing diffraction gratings, and multi-element optical systems.

Molecular targeting of the two receptor interaction domains of the epigenetic repressor silencing mediator of retinoid and thyroid hormone receptors (SMRT(mRID)) produced a transplantable skeletal syndrome that reduced radial bone growth, increased numbers of bone-resorbing periosteal osteoclasts, and increased bone fracture risk. Furthermore, SMRT(mRID) mice develop spontaneous primary myelofibrosis, a chronic, usually idiopathic disorder characterized by progressive bone marrow fibrosis. Frequently linked to polycythemia vera and chronic myeloid leukemia, myelofibrosis displays high patient morbidity and mortality, and current treatment is mostly palliative. To decipher the etiology of this disease, we identified the thrombopoietin (Tpo) gene as a target of the SMRT-retinoic acid receptor signaling pathway in bone marrow stromal cells. Chronic induction of Tpo in SMRT(mRID) mice results in up-regulation of TGF-β and PDGF in megakaryocytes, uncontrolled proliferation of bone marrow reticular cells, and fibrosis of the marrow compartment. Of therapeutic relevance, we show that this syndrome can be rescued by retinoid antagonists, demonstrating that the physical interface between SMRT and retinoic acid receptor can be a potential therapeutic target to block primary myelofibrosis disease progression.

Much has been learned about transcriptional cascades and networks from large-scale systems analyses of high-throughput datasets. However, analysis methods that optimize statistical power through simultaneous evaluation of thousands of ChIP-seq peaks or differentially expressed genes possess substantial limitations in their ability to uncover mechanistic principles of transcriptional control. By examining nascent transcript RNA-seq, ChIP-seq, and binding motif datasets from lipid A-stimulated macrophages with increased attention to the quantitative distribution of signals, we identified unexpected relationships between the in vivo binding properties of inducible transcription factors, motif strength, and transcription. Furthermore, rather than emphasizing common features of large clusters of co-regulated genes, our results highlight the extent to which unique mechanisms regulate individual genes with key biological functions. Our findings demonstrate the mechanistic value of stringent interrogation of well-defined sets of genes as a complement to broader systems analyses of transcriptional cascades and networks.