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- short-paperAugust 2017
TRuML: A Translator for Rule-Based Modeling Languages
ACM-BCB '17: Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health InformaticsPages 372–377https://doi.org/10.1145/3107411.3107471Rule-based modeling languages, such as the Kappa and BioNetGen languages (BNGL), are powerful frameworks for modeling the dynamics of complex biochemical reaction networks. Each language is distributed with a distinct software suite and modelers may ...
- ArticleJune 2013
A computationally and cognitively plausible model of supervised and unsupervised learning
BICS'13: Proceedings of the 6th international conference on Advances in Brain Inspired Cognitive SystemsPages 145–156https://doi.org/10.1007/978-3-642-38786-9_17Both empirical and mathematical demonstrations of the importance of chance-corrected measures are discussed, and a new model of learning is proposed based on empirical psychological results on association learning. Two forms of this model are developed, ...
- research-articleJune 2012
Formal Cellular Machinery
Various calculi have been proposed to model different levels of abstraction of cell signaling and molecular interactions. In this paper we propose a framework inspired by some of these calculi that structures interactions and agents from the most basic ...
- ArticleJune 2010
An examination on emergence from social behavior: a case in information retrieval
ICSI'10: Proceedings of the First international conference on Advances in Swarm Intelligence - Volume Part IIPages 523–530https://doi.org/10.1007/978-3-642-13498-2_68The swarm intelligence has been applied to enhancing web search. But few researches investigate the emergence from the behaviors of users when they forage information through web search engine. In this paper we study the emergence in users' click ...
- research-articleOctober 2008
A3: a coding guideline for HCI+autism research using video annotation
Assets '08: Proceedings of the 10th international ACM SIGACCESS conference on Computers and accessibilityPages 11–18https://doi.org/10.1145/1414471.1414476Due to the profile of strengths and weaknesses indicative of autism spectrum disorders (ASD), technology may play a key role in ameliorating communication difficulties with this population. This paper documents coding guidelines established through ...
- invited-talkJanuary 2008
Systems biology, models, and concurrency
POPL '08: Proceedings of the 35th annual ACM SIGPLAN-SIGACT symposium on Principles of programming languagesPages 1–2https://doi.org/10.1145/1328438.1328439Models will play a central role in the representation, storage, manipulation, and communication of knowledge in systems biology. Models capable of fulfilling such a role will likely differ from the all familiar styles deployed with great success in the ...
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ACM SIGPLAN Notices: Volume 43 Issue 1 - articleApril 2002
Measuring agreement in medical informatics reliability studies
Agreement measures are used frequently in reliability studies that involve categorical data. Simple measures like observed agreement and specific agreement can reveal a good deal about the sample. Chance-corrected agreement in the form of the kappa ...
- articleApril 2002
Measuring agreement in medical informatics reliability studies
Journal of Biomedical Informatics (JOBI), Volume 35, Issue 2Pages 99–110https://doi.org/10.1016/S1532-0464(02)00500-2Agreement measures are used frequently in reliability studies that involve categorical data. Simple measures like observed agreement and specific agreement can reveal a good deal about the sample. Chance-corrected agreement in the form of the kappa ...
- articleFebruary 2001
Classification of Procedures in the Domain of Thoracic Surgery—A Study of Reliability in Coding
Journal of Medical Systems (JMSY), Volume 25, Issue 1Pages 47–61https://doi.org/10.1023/A:1005636432502This paper relates a study of reliability of coding of surgical procedures in the domain of thoracic surgery. The reliability measured is inter-coder variability in form of agreement. Four classifications were used by four physicians on 100 patient ...
- articleJanuary 1989
Mathematical and computer modelling reports: A model for agreement between ratings on an ordinal scale
Mathematical and Computer Modelling: An International Journal (MATHCM), Volume 12, Issue 9Page 1188https://doi.org/10.1016/0895-7177(89)90272-0A class of models is proposed for describing agreement between raters who classify a sample on a subjective ordinal scale. The class is obtained by adding to the independence model a component describing baseline association between ratings and a main-...