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- short-paperOctober 2022
Ligand-receptor-based wireless biological nanonetworks
NANOCOM '22: Proceedings of the 9th ACM International Conference on Nanoscale Computing and CommunicationArticle No.: 30, Pages 1–2https://doi.org/10.1145/3558583.3558870In this work, the Ligand-Receptor model and the way it affects the message exchange process in a biological nanonetwork are under scrutiny. To this aim, a set of efficient simulation schemes for the effects of the number of receptors and the residence ...
- short-paperOctober 2022
Multi-hop relay directional communication based on attractants in molecular communication
NANOCOM '22: Proceedings of the 9th ACM International Conference on Nanoscale Computing and CommunicationArticle No.: 26, Pages 1–3https://doi.org/10.1145/3558583.3558866In this paper, a new multi-hop relay algorithm based on three attractants is proposed for the traditional multi-hop relay model. When the nano-machine encounters different attractants, the algorithm allows the nano-machine to choose the direction with a ...
- short-paperOctober 2022
Two-way chemotaxis-based communication for biological nanonetworks
NANOCOM '22: Proceedings of the 9th ACM International Conference on Nanoscale Computing and CommunicationArticle No.: 22, Pages 1–2https://doi.org/10.1145/3558583.3558861This work proposes a new switching scheme between different chemotactic substances, as a way to affect bacterial movement and to enhance message delivery in biological nanonetworks. By switching between different chemotactic substances release plans, ...
- research-articleSeptember 2023
Finite Element Analysis of the Two-Competing-Species Keller–Segel Chemotaxis Model
Computational Mathematics and Modeling (SPCMM), Volume 33, Issue 4Pages 443–471https://doi.org/10.1007/s10598-023-09586-1This paper analyzes a finite element scheme for the Keller–Segel chemotaxis model of two-competing-species. A regularized problem of the truncated system has been presented. Then, we obtain some a priori estimates of the regularized solutions by obtaining ...
- research-articleAugust 2022
Slow Migration of Brine Inclusions in First-Year Sea Ice
SIAM Journal on Applied Mathematics (SJAM), Volume 82, Issue 4Pages 1470–1494https://doi.org/10.1137/21M1440244We derive a thermodynamically consistent model for liquid-solid phase change in sea ice by incorporating a phase sensitive scalar to a classical framework of liquid-solid phase change. The entropy of the scalar is taken relative to the liquid molar ...
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- research-articleJanuary 2021
Taxis-driven Formation of Singular Hotspots in a May--Nowak Type Model for Virus Infection
SIAM Journal on Mathematical Analysis (SIMA), Volume 53, Issue 2Pages 1411–1433https://doi.org/10.1137/20M1362851A three-component reaction-diffusion system is considered which originates from an extension of the classical May--Nowak model for viral infections to situations in which spatially heterogeneous dynamics need to be accounted for. In accordance with recent ...
- research-articleJanuary 2021
Numerical Scheme for Kinetic Transport Equation with Internal State
Multiscale Modeling and Simulation (MMS), Volume 19, Issue 1Pages 184–207https://doi.org/10.1137/20M134441XWe investigate the numerical discretization of a two-stream kinetic system with an internal state; such a system has been introduced to model the motion of cells by chemotaxis. This internal state models the intracellular methylation level. It adds a ...
- research-articleJanuary 2020
Small-Mass Solutions in the Two-Dimensional Keller--Segel System Coupled to the Navier--Stokes Equations
SIAM Journal on Mathematical Analysis (SIMA), Volume 52, Issue 2Pages 2041–2080https://doi.org/10.1137/19M1264199The fully parabolic Keller--Segel system is coupled to the incompressible Navier--Stokes equations through transport and buoyancy. It is shown that when posed with no-flux/no-flux/Dirichlet boundary conditions in smoothly bounded planar domains and along ...
- short-paperSeptember 2019
Directional transmission in biological nanonetworks via positive Chemotaxis
- Theodoros Nestoridis,
- Konstantinos Kantelis,
- Stathis Mavridopoulos,
- Georgios Papadimitriou,
- Petros Nicopolitidis
NANOCOM '19: Proceedings of the Sixth Annual ACM International Conference on Nanoscale Computing and CommunicationArticle No.: 37, Pages 1–2https://doi.org/10.1145/3345312.3345491Biological nanonetworks have unique properties that can be exploited so as to develop relative communication paradigms. The aim of this work is to examine the use of the chemotaxis phenomenon to speed up the delivery of a message by directing bacteria ...
- research-articleNovember 2019
Preconditioners and Tensor Product Solvers for Optimal Control Problems from Chemotaxis
SIAM Journal on Scientific Computing (SISC), Volume 41, Issue 6Pages B1228–B1253https://doi.org/10.1137/18M1198041In this paper, we consider the fast numerical solution of an optimal control formulation of the Keller--Segel model for bacterial chemotaxis. Upon discretization, this problem requires the solution of huge-scale saddle point systems to guarantee accurate ...
- research-articleJanuary 2019
Occurrence vs. Absence of Taxis-Driven Instabilities in a May--Nowak Model for Virus Infection
SIAM Journal on Applied Mathematics (SJAM), Volume 79, Issue 5Pages 1990–2010https://doi.org/10.1137/19M1250261This work focuses on an extension to the May--Nowak model for virus dynamics, additionally accounting for diffusion in all components and chemotactically directed motion of healthy cells in response to density gradients in the population of infected cells. ...
- research-articleJanuary 2019
Eventual Smoothness and Exponential Stabilization of Global Weak Solutions to Some Chemotaxis Systems
SIAM Journal on Mathematical Analysis (SIMA), Volume 51, Issue 6Pages 4604–4644https://doi.org/10.1137/19M1245025In this paper we develop a unified approach to study the eventual smoothness and exponential stabilization of global weak solutions of two different chemotaxis systems. One is a Keller--Segel system with consumption of chemo-attractants recently studied ...
- research-articleJanuary 2019
On a Cahn--Hilliard--Brinkman Model for Tumor Growth and Its Singular Limits
SIAM Journal on Mathematical Analysis (SIMA), Volume 51, Issue 3Pages 1868–1912https://doi.org/10.1137/18M1228104In this work, we study a model consisting of a Cahn--Hilliard-type equation for the concentration of tumor cells coupled to a reaction-diffusion-type equation for the nutrient density and a Brinkman-type equation for the velocity. We equip the system with a ...
- research-articleJanuary 2019
Generalized Global Supersolutions with Mass Control for Systems with Taxis
SIAM Journal on Mathematical Analysis (SIMA), Volume 51, Issue 3Pages 2425–2443https://doi.org/10.1137/18M1217826The existence of generalized global supersolutions with a control upon the total mass is established for a wide family of parabolic-parabolic chemotaxis systems and general integrable initial data in any space dimension. It is verified that as long as a ...
- articleApril 2018
Fractional Patlak--Keller--Segel Equations for Chemotactic Superdiffusion
SIAM Journal on Applied Mathematics (SJAM), Volume 78, Issue 2Pages 1155–1173https://doi.org/10.1137/17M1142867The long range movement of certain organisms in the presence of a chemoattractant can be governed by long distance runs, according to an approximate Leźvy distribution. This article clarifies the form of biologically relevant model equations. We derive ...
- research-articleJanuary 2018
Global Very Weak Solutions to a Chemotaxis-Fluid System with Nonlinear Diffusion
SIAM Journal on Mathematical Analysis (SIMA), Volume 50, Issue 4Pages 4087–4116https://doi.org/10.1137/17M1159488We consider the chemotaxis-fluid system given by $n_{t}+u\cdot\!\nabla n=\Delta n^m-\nabla\!\cdot(n\nabla c)$, $c_{t}+u\cdot\!\nabla c=\Delta c-c+n$, $u_{t}+(u\cdot\nabla)u=\Delta u+\nabla P+n\nabla\phi$, and $\nabla\cdot u=0$, for $x\in\Omega$ and $t>0$, ...
- research-articleJanuary 2018
Global Cauchy Problem of a System of Parabolic Conservation Laws Arising From a Keller--Segel Type Chemotaxis Model
SIAM Journal on Mathematical Analysis (SIMA), Volume 50, Issue 5Pages 5380–5425https://doi.org/10.1137/17M1135645We study the qualitative behavior of solutions to the Cauchy problem of a coupled system in $(p,q)$ of parabolic conservation laws in one space dimension posed on $\mathbb{R}$. This system arises from a Keller--Segel type repulsive model for chemotaxis ...
- research-articleJanuary 2018
A Stokes Two-Fluid Model for Cell Migration that Can Account for Physical Cues in the Microenvironment
SIAM Journal on Mathematical Analysis (SIMA), Volume 50, Issue 1Pages 86–118https://doi.org/10.1137/16M1078185The purpose of this note is to analyze a two-fluid model which can be understood as a generalization of Keller--Segel type of models for cell migration due to random motion and chemotaxis. A multiphase modelling approach is used to describe how a ...
- research-articleMarch 2017
Lower Bound of Mass in a Chemotactic Model with Advection and Absorbing Reaction
SIAM Journal on Mathematical Analysis (SIMA), Volume 49, Issue 2Pages 723–755https://doi.org/10.1137/16M1071778We consider a mathematical model motivated by the studies of coral broadcast spawning in spatial dimensions two and three. We establish the local and global well-posedness of regular solutions for the model. We also prove that the total mass of the egg (...
- research-articleJanuary 2017
An Effective Model for Biofilm Growth Made by Chemotactical Bacteria in Evolving Porous Media
SIAM Journal on Applied Mathematics (SJAM), Volume 77, Issue 5Pages 1653–1677https://doi.org/10.1137/16M108817XThe article concerns the growth of biofilms made by chemotactical bacteria within a saturated porous media. The increase of a biomass on the surface of the solid matrix changes the porosity and impedes the flow through the pores. By formal periodic ...