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- research-articleJanuary 2025
QGIS Shoreline Change Analysis Tool (QSCAT): A fast, open-source shoreline change analysis plugin for QGIS
- Louis Philippe Facun,
- Ma. Yvainne Sta Maria,
- Rodel Ducao,
- Jamela Jirah Clemente,
- Ellen Mae Carmelo,
- Angelo Maon,
- Ara Rivina Malaya,
- Floribeth Cuison,
- Fernando Siringan
Environmental Modelling & Software (ENMS), Volume 184, Issue Chttps://doi.org/10.1016/j.envsoft.2024.106263AbstractCoastal erosion poses a significant threat to most coastal communities. This necessitates a better understanding of coastal erosion dynamics, and thus, shoreline change analysis (SCA) tools would be handy. However, many available tools require ...
Highlights- For SCA, QSCAT is an equally reliable but relatively faster alternative to DSAS.
- QSCAT can perform both transect-based and area-based analyses.
- Development as a QGIS plugin enhances accessibility and adoption of QSCAT.
- research-articleJanuary 2025
Avoid backtracking and burn your inputs: CONUS-scale watershed delineation using OpenMP
Environmental Modelling & Software (ENMS), Volume 183, Issue Chttps://doi.org/10.1016/j.envsoft.2024.106244AbstractThe Memory-Efficient Watershed Delineation (MESHED) parallel algorithm is introduced for Contiguous United States (CONUS)-scale hydrologic modeling. Delineating tens of thousands of watersheds for a continental-scale study can not only be ...
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Highlights- A memory-efficient watershed delineation algorithm was introduced.
- The new algorithm uses a node-skipping depth-first search to save memory.
- Both input and output data are stored in a shared matrix to reduce required memory.
- It ...
- research-articleJanuary 2025
SlicerCineTrack: An open-source research toolkit for target tracking verification in 3D Slicer
- HaPhan Tran,
- Teo Mesrkhani,
- Jacqueline Banh,
- Nicholas Caro Lopez,
- Venkat Guru Prasad,
- Sayeed Jalil,
- Mubariz Afzal,
- Elodie Lugez
Computer Methods and Programs in Biomedicine (CBIO), Volume 258, Issue Chttps://doi.org/10.1016/j.cmpb.2024.108497Abstract Purpose:Target motion monitoring plays a significant role in several computer-assisted interventions. However, ensuring the reliability of tracking algorithms can be challenging without adequate tools. We introduce SlicerCineTrack, a free open-...
Highlights- Open-source toolkit for target tracking verification in 3D Slicer.
- Enables visualization of tracking results with cine images and segmentation overlays.
- Evaluated by experts; found effective and user-friendly for tracking ...
- research-articleOctober 2024
Pywr-DRB: An open-source Python model for water availability and drought risk assessment in the Delaware River Basin
Environmental Modelling & Software (ENMS), Volume 181, Issue Chttps://doi.org/10.1016/j.envsoft.2024.106185AbstractThe Delaware River Basin (DRB) in the Mid-Atlantic region of the United States is an institutionally complex water resources system that provides drinking water for 13.5 million people, plus water for energy, industry, recreation, and ecosystems. ...
Highlights- Pywr-DRB enables open science & drought risk planning for the Delaware River Basin.
- Pywr-DRB bridges hydrologic model data, observations & water management modeling.
- Reservoirs, diversions & minimum flow targets shape low-flow ...
- ArticleJuly 2024
The Reformation of Sage
AbstractThe monolithic open-source mathematical software system Sage, developed since 2005, is being transformed into a modular system of Python libraries with a renewed focus on collaboration and vertical integration. This paper is the author’s personal ...
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- research-articleJuly 2024
An interoperable software system to store, associate, visualize, and publish global open science data of earth surface system
Environmental Modelling & Software (ENMS), Volume 178, Issue Chttps://doi.org/10.1016/j.envsoft.2024.106070AbstractMulti-source heterogeneous, multi-modal, and multi-type open scientific data (e.g., thematic sharing sites, metadata, journal articles, etc.) on earth surface systems (EES) provide important data sources for knowledge mining, discovery, and ...
Highlights- Developed a novel tool for constructing a scientific data association network.
- Presented an interoperable software system.
- Proposed a ‘time-space-topic’ model for building associative networks.
- research-articleJune 2024
Exploring ChatGPT for identifying sexism in the communication of software developers
PETRA '24: Proceedings of the 17th International Conference on PErvasive Technologies Related to Assistive EnvironmentsPages 400–403https://doi.org/10.1145/3652037.3663918The software development community, largely dominated by male developers, frequently exhibits instances of sexism and misogyny. While efforts have been made to automatically detect toxic and misogynistic language within this community, existing tools ...
- research-articleMarch 2024
PyRefra – Refraction seismic data treatment and inversion
AbstractOpen-source software in the geophysical community has been increasingly taking importance since more than a decade. Following this spirit, this study presents an open-source Python software for display, processing, picking of near-surface ...
Highlights- Development of a platform-independent code: PyRefra.
- PyRefra allows visualisation and treatment of refraction seismic data.
- Different picking methods are available.
- Pygimli is used for tomographic inversion.
- An example for ...
- research-articleFebruary 2024
Quality evaluation meta-model for open-source software: multi-method validation study
Software Quality Journal (KLU-SQJO), Volume 32, Issue 2Pages 487–541https://doi.org/10.1007/s11219-023-09658-wAbstractIn recent years, open-source software (OSS) has attracted increasing attention due to its easy accessibility via cloud repositories, voluntary community, no vendor lock-in, and low total cost of ownership. In turn, specifying and evaluating OSS ...
- research-articleDecember 2023
GeoFabrics 1.0.0: An open-source Python package for automatic hydrological conditioning of digital elevation models for flood modelling
- Rose A. Pearson,
- Graeme Smart,
- Matt Wilkins,
- Emily Lane,
- Alice Harang,
- Cyprien Bosserelle,
- Céline Cattoën,
- Richard Measures
Environmental Modelling & Software (ENMS), Volume 170, Issue Chttps://doi.org/10.1016/j.envsoft.2023.105842AbstractDigital Elevation Models (DEMs) are essential for two-dimensional flood modelling. Remote sensing provides ever-increasing coverage and quality of elevation and other data for DEM generation, but we lack standalone tools for integrating this ...
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Highlights- GeoFabrics provides a fully automated process for producing hydrologically conditioned digital elevation models.
- GeoFabrics can assimilate a wide range of elevation, infrastructure and natural feature data into digital elevation ...
- research-articleNovember 2023
PPPH-VA: an open‑source software for real-time multi-GNSS variometric approach using single- and dual-frequency observations
AbstractVariometric approach (VA) technique has been introduced as an alternative to real-time kinematics and real-time precise point positioning techniques. As the ability of the variometric approach to detect short-term dynamic behaviors in real-time ...
- research-articleNovember 2023
DRR: An open-source multi-platform package for the damped rank-reduction method and its applications in seismology
AbstractWe present an open-source multi-platform package for the damped rank-reduction (DRR) method, that has been widely used in various problems in seismology. The DRR method is an optimally improved rank-reduction (RR) method by damping the singular ...
Highlights- We present an open-source multi-platform package, DRR, for various applications in seismology.
- The DRR method can separate the useful signal and unwanted noise in multi-channel seismic data.
- The DRR package is composed of two parts:...
- ArticleOctober 2023
SlicerSALT: From Medical Images to Quantitative Insights of Anatomy
- Jared Vicory,
- Ye Han,
- Juan Carlos Prieto,
- David Allemang,
- Mathieu Leclercq,
- Connor Bowley,
- Harald Scheirich,
- Jean-Christophe Fillion-Robin,
- Steve Pizer,
- James Fishbaugh,
- Guido Gerig,
- Martin Styner,
- Beatriz Paniagua
AbstractThree-dimensional (3D) shape lies at the core of understanding the physical objects that surround us. In the biomedical field, shape analysis has been shown to be powerful in quantifying how anatomy changes with time and disease. The Shape ...
- research-articleOctober 2023
Investigating Developers' Contributions to Test Smell Survivability: A Study of Open-Source Projects
SAST '23: Proceedings of the 8th Brazilian Symposium on Systematic and Automated Software TestingPages 86–95https://doi.org/10.1145/3624032.3624044Open-source software (OSS) projects rely on core and peripheral developers to develop, release, and maintain software. The former group plays a crucial role in initiating the project and making key decisions, while the latter contributes less ...
- research-articleAugust 2023
Identifying refactoring opportunities for large packages by analyzing maintainability characteristics in Java OSS
Journal of Systems and Software (JSSO), Volume 202, Issue Chttps://doi.org/10.1016/j.jss.2023.111717AbstractThe source code of a Java-based software system is often structured into packages. When packages are large, they often carry maintainability quality issues. In the literature, there is a lack of empirical evidence on the specific maintainability ...
Highlights
- Large packages have significantly higher coupling, cohesion, and complexity issues.
- A package cohesion metric could be used for refactoring large packages.
- A package complexity metric could be used for refactoring large packages.
- research-articleJuly 2023
OPS-ITO: Development of Isogeometric Analysis and Topology Optimization in OpenSEES for Free-Form Structural Design
AbstractUnlike the current design routine manually defining geometries for computational analyses, a future-oriented computer-aided design tool can generate a structural model through automated model optimization and iterative analyses. The ...
Highlights- Isogeometric analysis elements have been developed in OpenSees using NUBRS based shape function.
- research-articleMay 2023
Computational framework for complex flow and transport in heterogeneous porous media
Engineering with Computers (ENGC), Volume 39, Issue 6Pages 3927–3940https://doi.org/10.1007/s00366-023-01825-8AbstractWe present a flexible scalable open-source computational framework, named SECUReFoam, based on the finite-volume library OpenFOAM®, for flow and transport problems in highly heterogeneous geological media and other porous materials. The framework ...
- research-articleApril 2023
pystorms: A simulation sandbox for the development and evaluation of stormwater control algorithms
- Sara P. Rimer,
- Abhiram Mullapudi,
- Sara C. Troutman,
- Gregory Ewing,
- Benjamin D. Bowes,
- Aaron A. Akin,
- Jeffrey Sadler,
- Ruben Kertesz,
- Bryant McDonnell,
- Luis Montestruque,
- Jon Hathaway,
- Jonathan L. Goodall,
- John Norton,
- Branko Kerkez
Environmental Modelling & Software (ENMS), Volume 162, Issue Chttps://doi.org/10.1016/j.envsoft.2023.105635AbstractAdvances in cyber–physical technologies have enabled real-time sensing and adaptive control of stormwater infrastructure. These smart stormwater systems allow for inexpensive, minimally-invasive stormwater control interventions in lieu ...
- research-articleApril 2023
Interactive data-driven multiobjective optimization of metallurgical properties of microalloyed steels using the DESDEO framework
Engineering Applications of Artificial Intelligence (EAAI), Volume 120, Issue Chttps://doi.org/10.1016/j.engappai.2023.105918AbstractSolving real-life data-driven multiobjective optimization problems involves many complicated challenges. These challenges include preprocessing the data, modelling the objective functions, getting a meaningful formulation of the ...
- case-reportMarch 2023
Open-source software for multi-GNSS inter-frequency clock bias estimation
AbstractAs one of the key issues in multi-frequency Global Navigation Satellite System (GNSS) applications, the inter-frequency clock bias (IFCB) has been well studied in recent years. However, the lack of publicly available IFCB products prevents users ...