Parallel Megabase DNA Sequence Comparison with OpenCL
Abstract
- Parallel Megabase DNA Sequence Comparison with OpenCL
Recommendations
Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs
PPoPP '14: Proceedings of the 19th ACM SIGPLAN symposium on Principles and practice of parallel programmingThis paper proposes and evaluates a parallel strategy to execute the exact Smith-Waterman (SW) algorithm for megabase DNA sequences in heterogeneous multi-GPU platforms. In our strategy, the computation of a single huge SW matrix is spread over multiple ...
From CUDA to OpenCL: Towards a performance-portable solution for multi-platform GPU programming
In this work, we evaluate OpenCL as a programming tool for developing performance-portable applications for GPGPU. While the Khronos group developed OpenCL with programming portability in mind, performance is not necessarily portable. OpenCL has ...
Scalable multicore architectures for long DNA sequence comparison
Biological sequence comparison is one of the most important tasks in Bioinformatics. Owing to the fast growth of databases that contain biological information, sequence comparison represents an important challenge for high-performance computing, ...
Comments
Please enable JavaScript to view thecomments powered by Disqus.Information & Contributors
Information
Published In
Publisher
IEEE Computer Society
United States
Publication History
Qualifiers
- Article
Contributors
Other Metrics
Bibliometrics & Citations
Bibliometrics
Article Metrics
- 0Total Citations
- 0Total Downloads
- Downloads (Last 12 months)0
- Downloads (Last 6 weeks)0
Other Metrics
Citations
View Options
View options
Login options
Check if you have access through your login credentials or your institution to get full access on this article.
Sign in