Investigating the Landscape of Ontologies for Catalysis Research Data Management
DOI:
https://doi.org/10.52825/cordi.v1i.232Keywords:
Ontology Collection, Catalysis, Semantic Web, ClassificationAbstract
This work provides a survey of ontologies for catalysis research to improve the findability, accessibility, interoperability, and reusability (FAIRness) of research data. Applying tools that are commonly used by lab scientists, ontologies relevant to catalysis research are classified in a simple, well formatted spreadsheet template (Excel). This enables a scientist and domain expert without programming skills to evaluate a certain ontology. The entries of this template are then processed and visualized through automated creation of markdown files on GitHub using Python scripts. Furthermore, ontology mapping by searching for similar pairs of classes across different ontologies is performed, using the outcome of the ontology classification. This work contributes to the development of ontologies for catalysis research, facilitating better data integration and knowledge sharing while reusing existing semantic artefacts.
Downloads
References
T. R. Gruber, “A translation approach to portable ontology specifications,” Knowl.Acquis., vol. 5, no. 2, pp. 199–220, 1993, doi: https://doi.org/10.1006/knac.1993.1008
C. Wulf et al., “A Unified Research Data Infrastructure for Catalysis Research – Chal-lenges and Concepts,” ChemCatChem 2021, 13, 3223 doi: https://doi.org/10.1002/cctc.202001974
M. Horsch et al., “Interoperability and Architecture Requirements Analysis and Metadata Standardization for a Research Data Infrastructure in Catalysis,” In: Pozanenko, A., Stupnikov, S., Thalheim, B., Mendez, E., Kiselyova, N. (eds) Data Analytics and Management in Data Intensive Domains. DAMDID/RCDL 2021. Com-munications in Computer and Information Science, vol 1620. Springer, Cham., 2022, doi: https://doi.org/10.1007/978-3-031-12285-9_10
S. Jupp et al., “A new Ontology Lookup Service at EMBL-EBI,” In: Malone, J. et al. (eds.) Proceedings of SWAT4LS International Conference 2015, URL: https://www.ebi.ac.uk/ols/index
N.F. Noy et al., “BioPortal: ontologies and integrated data resources at the click of a mouse,” Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W170-3. Epub 2009, URL: https://bioportal.bioontology.org/
P. Strömert et al., “Ontologies4Chem: the landscape of ontologies in chemistry,” Pure and Applied Chemistry, vol. 94, no. 6, 2022, pp. 605-622. https://doi.org/10.1515/pac-2021-2007
Downloads
Published
How to Cite
Conference Proceedings Volume
Section
License
Copyright (c) 2023 Alexander S. Behr, Hendrik Borgelt, Taras Petrenko, Mark Dörr, Norbert Kockmann
This work is licensed under a Creative Commons Attribution 4.0 International License.
Accepted 2023-06-29
Published 2023-09-07
Funding data
-
Deutsche Forschungsgemeinschaft
Grant numbers NFDI/2-1 - 2021