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Faculty of Biology and Medicine at University of Lausanne & Lausanne University Hospital

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Published May 31, 2022 | Version v1.0
Dataset Open

Dataset A Fetal Brain magnetic resonance Acquisition Numerical phantom (FaBiAN)

Creators

  • 1. Department of Radiology, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland & CIBM Center for Biomedical Imaging, Switzerland
  • 2. Advanced Clinical Imaging Technology (ACIT), Siemens Healthcare, Lausanne, Switzerland & Department of Radiology, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland & Signal Processing Laboratory 5 (LTS5), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
  • 3. Department of Radiology, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland
  • 4. CIBM Center for Biomedical Imaging, Switzerland & Department of Radiology, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland

Description

This dataset gathers synthetic T2-weighted magnetic resonance (MR) images generated using FaBiAN, a Fetal Brain magnetic resonance Acquisition Numerical phantom that simulates fast spin echo (FSE) sequences of the developing fetal brain throughout gestation.
This dataset is associated with the following paper:
      Lajous H. et al. (2022) A Fetal Brain magnetic resonance Acquisition Numerical phantom (FaBiAN). Scientific Reports. https://doi.org/10.1038/s41598-022-10335-4

This dataset provides images simulated by FaBiAN based on the specific implementation of FSE sequences by two MR vendors (Half-Fourier Acquisition Single-shot Turbo spin Echo (HASTE), Siemens Healthcare, and Single-Shot Fast Spin Echo (SS-FSE), GE Healthcare) at 1.5 T or 3 T.
Automated brain tissue annotations of the low-resolution series and super-resolution (SR) reconstructions are also included.

Works using any of these data should cite the following references:
- Lajous, H. et al. A Fetal Brain magnetic resonance Acquisition Numerical phantom (FaBiAN). Scientific Reports (2022). https://doi.org/10.1038/s41598-022-10335-4
- Lajous, H., Roy, C. W., Yerly, J. & Bach Cuadra, M. Medical-Image-Analysis-Laboratory/FaBiAN: FaBiAN v1.2 (1.2). Zenodo (2022). https://doi.org/10.5281/zenodo.5471094
- Lajous, H. et al. Dataset A Fetal Brain magnetic resonance Acquisition Numerical phantom (FaBiAN). Zenodo (2022). https://doi.org/10.5281/zenodo.6477946


Copyright (c) - All rights reserved. Medical Image Analysis Laboratory - Department of Radiology, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), Lausanne, Switzerland & CIBM Center for Biomedical Imaging. 2022.

Notes

Some users reported issues when downloading the Simulated_HASTE_images.zip archive on Linux/Ubuntu systems (damaged zip archive). Please use the updated version 1.1 if you encounter the same difficulties. The data are exactly the same, but the folder was compressed using 7-Zip on a Windows machine.

Files

Dataset_FaBiAN_Graphical_abstract.pdf

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Additional details

Related works

Is derived from
Software: 10.5281/zenodo.5471094 (DOI)
Is supplement to
Journal article: 10.1038/s41598-022-10335-4 (DOI)
Other: https://arxiv.org/abs/2109.03624 (URL)
Conference paper: 10.1007/978-3-030-87735-4_15 (DOI)
Conference paper: https://arxiv.org/abs/2111.04737 (URL)

Funding

Swiss National Science Foundation
Advanced super-resolution reconstruction methods for quantitative magnetic resonance imaging of the developing fetal brain 205321_182602