Nothing Special   »   [go: up one dir, main page]

Skip to main content

Advertisement

Log in

Deep learning approaches for lyme disease detection: leveraging progressive resizing and self-supervised learning models

  • Published:
Multimedia Tools and Applications Aims and scope Submit manuscript

Abstract

Lyme disease diagnosis poses a significant challenge, with blood tests exhibiting an alarming inaccuracy rate of nearly 60% in detecting early-stage infections. As a result, there is an urgent need for improved diagnostic methods that can offer more accurate detection outcomes. To address this pressing issue, our study focuses on harnessing the potential of deep learning approaches, specifically by employing model pipelining through progressive resizing and multiple self-supervised learning models. In this paper, we present a comprehensive exploration of self-supervised learning models, including SimCLR, SwAV, MoCo, and BYOL, tailored to the context of Lyme disease detection using medical imaging. The effectiveness and performance of these models are evaluated using standard metrics such as F1 score, precision, recall, and accuracy. Furthermore, we emphasize the significance of progressive resizing and its implications when dealing with convolutional neural networks (CNNs) for medical image analysis. By leveraging deep learning approaches, progressive resizing, and self-supervised learning models, the challenges associated with Lyme disease detection are effectively addressed in this study. The application of our novel methodology and the execution of a comprehensive evaluation framework contribute invaluable insights, fostering the development of more efficient and accurate diagnostic methods for Lyme disease. It is firmly believed that our research will serve as a catalyst, inspiring interdisciplinary collaborations that accelerate progress at the convergence of medicine, computing, and technology, ultimately benefiting public health.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8
Fig. 9
Fig. 10
Fig. 11
Fig. 12
Fig. 13
Fig. 14
Fig. 15
Fig. 16
Fig. 17
Fig. 18
Fig. 19
Fig. 20

Similar content being viewed by others

Explore related subjects

Discover the latest articles, news and stories from top researchers in related subjects.

Data availability

This study uses an open source Lyme Disease Rashes dataset that can be accessed via https://www.kaggle.com/datasets/sshikamaru/lyme-disease-rashes, an open-source online data repository hosted at Kaggle (www.kaggle.com).

References

  1. Alam M, Munia TTK, Tavakolian K, Vasefi F, MacKinnon N, Fazel-Rezai R (2016) Automatic detection and severity measurement of eczema using image processing. Proceedings of the 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Orlando, FL, USA, pp 1365–1368

  2. Asha GPH, Anitha J, Jacinth PJ (2018) Identification of melanoma in dermoscopy images using image processing algorithms. Proceedings of the 2018 IEEE International Conference on Control, Power, Communication and Computing Technologies (ICCPCCT), pp 553–557

  3. Awad M, Khanna R (2015) Support vector machines for classification. Efficient Learning Machines. Apress, Berkeley, pp 39–66

    Chapter  Google Scholar 

  4. Azizi S, Mustafa B, Ryan F, Beaver Z, Freyberg J, Deaton J, Loh A, Karthikesalingam A, Kornblith S, Chen T, Natarajan V, Norouzi M (2021) Big self-supervised models advance medical image classification. In: Proceedings of the 2021 IEEE/CVF International Conference on Computer Vision (ICCV), 2021, pp 3458–3468.  https://doi.org/10.1109/ICCV48922.2021.00346

  5. Bhatt AR, Ganatra A, Kotecha K (2021) Cervical cancer detection in pap smear whole slide images using convNet with transfer learning and progressive resizing. PeerJ Computer Sci 7:e348

    Article  Google Scholar 

  6. Burlina PM, Joshi NJ, Ng E, Billings SD, Rebman AW, Aucott JN (2019) Automated detection of Erythema Migrans and other confounding skin lesions via deep learning. Comput Biol Med 105:151–156

    Article  PubMed  Google Scholar 

  7. Burlina PM, Joshi NJ, Mathew PA, Paul W, Rebman AW, Aucott JN (2020) AI-based detection of Erythema Migrans and disambiguation against other skin lesions. Comput Biol Med 125:103977

    Article  PubMed  Google Scholar 

  8. Caron M, Misra I, Mairal J, Goyal P, Bojanowski P, Joulin A (2020) Unsupervised learning of visual features by contrasting cluster assignments. In: Proceedings of the 34th International Conference on Neural Information Processing Systems (NIPS'20), 831, pp 9912–9924

  9. Caron M, Touvron H, Misra I, Jégou H, Mairal J, Bojanowski P, Joulin A (2021) Emerging properties in self-supervised vision transformers. In: Proceedings of the 2021 IEEE/CVF International Conference on Computer Vision (ICCV), October 2021, pp 9630–9640.  https://doi.org/10.1109/ICCV48922.2021.00951

  10. Chaves L, Bissoto A, Valle E, Avila S (2023) An evaluation of self-supervised pre-training for skin-lesion analysis. In: Karlinsky, L., Michaeli, T., Nishino, K. (eds) Computer Vision – ECCV 2022 Workshops, ECCV 2022. Lecture Notes in Computer Science, vol 13804. Springer, Cham. https://doi.org/10.1007/978-3-031-25069-9_11

  11. Chen T, Kornblith S, Norouzi M, Hinton G (2020) A simple framework for contrastive learning of visual representations. In: Proceedings of the 37th International Conference on Machine Learning (ICML'20), 149, pp 1597–1607

  12. Chung M, Lee J, Park S, Lee CE, Lee J, Shin Y-G (2021) Liver segmentation in abdominal CT images via auto-context neural network and self-supervised contour attention. Artif Intell Med 113:102023

    Article  PubMed  Google Scholar 

  13. Čuk E, Gams M, Možek M, Strle F, Čarman VM, Tasič JF (2014) Supervised visual system for recognition of Erythema Migrans, an early skin manifestation of Lyme Borreliosis. Strojniški vestnik - J Mech Eng 60(2):115–123. https://doi.org/10.5545/sv-jme.2013.1046

    Article  Google Scholar 

  14. Dang Y, Jiang N, Hu H, Ji Z, Zhang W (2018) Image classification based on quantum K-Nearest-Neighbor algorithm. Quantum Inf Process 17:239

    Article  ADS  Google Scholar 

  15. Dosovitskiy A, Fischer P, Springenberg JT, Riedmiller M, Brox T (2016) Discriminative unsupervised feature learning with exemplar convolutional neural networks. IEEE Trans Pattern Anal Mach Intell 38(9):1734–1747

    Article  PubMed  Google Scholar 

  16. Grill JB, Strub F, Altché F, Tallec C, Richemond PH, Buchatskaya E, Doersch C, Pires BA, Guo ZD, Azar MG, Piot B, Kavukcuoglu K, Munos R, Valko M (2020) Bootstrap your own latent: A new approach to self-supervised learning. In: Proceedings of the 34th International Conference on Neural Information Processing Systems (NIPS'20), 1786, 21271–21284

  17. Hamad MA, Zeki AM (2018) Accuracy vs cost in decision trees: A survey. In: Proceedings of the 2018 International Conference on Innovation and Intelligence for Informatics, Computing, and Technologies (3ICT), Sakhier, Bahrain, 18–20 November 2018, pp 1–4

  18. Harangi B (2018) Skin lesion classification with ensembles of deep convolutional neural networks. J Biomed Inform 86:25–32

    Article  PubMed  Google Scholar 

  19. Horn EJ, Dempsey G, Schotthoefer AM, Prisco UL, McArdle M, Gervasi SS, Golightly M, De Luca C, Evans M, Pritt BS, Theel ES, Iyer R, Liveris D, Wang G, Goldstein D, Schwartz I (2020) The Lyme disease biobank: Characterization of 550 patient and control samples from the east coast and upper Midwest of the United States. J Clin Microbiol 58:6

    Article  Google Scholar 

  20. Hossain SkI, de Goër de Herve J, Hassan MS, Martineau D, Petrosyan E, Corbin V, Beytout J, Lebert I, Durand J, Carravieri I, Brun-Jacob A, Frey-Klett P, Baux E, Cazorla C, Eldin C, Hansmann Y, Patrat-Delon S, Prazuck T, Raffetin A, Tattevin P, Vourc’h G, Lesens O, Nguifo EM (2022) Exploring convolutional neural networks with transfer learning for diagnosing Lyme disease from skin lesion images. Comput Methods Progr Biomed 215:106624

    Article  Google Scholar 

  21. Immagulate I, Vijaya MS (2015) Categorization of non-melanoma skin lesion diseases using support vector machine and its variants. Int J Med Imaging 3(2):34–40

    Article  Google Scholar 

  22. Jang S, Park S, Lee H (2019) Progressive image resizing for deep learning: applications to whole slide images in pathology and biology. Sci Rep 9(1):1–11

    Google Scholar 

  23. Kwasigroch A, Grochowski M, Mikołajczyk A (2020) Self-supervised learning to increase the performance of skin lesion classification. Electronics 9(11):1930

    Article  Google Scholar 

  24. Kwon JH, Lee JK (2019) Progressive resizing using deep learning for pulmonary nodule detection in chest CT scans. Med Phys 46(7):3111–3120

    Google Scholar 

  25. Li X, Chen H, Qi X, Dou Q, Fu CW (2020) Efficient 3D deep learning for image-guided breast cancer surgery using progressive resizing convolutional neural network. Med Phys 47(5):2127–2138

    Google Scholar 

  26. Liu X, Zhang F, Hou Z, Mian L, Wang Z, Zhang J, Tang J (2021) Self-supervised learning: Generative or contrastive. IEEE Trans Knowl Data Eng. https://doi.org/10.1109/TKDE.2021.3090866

    Article  Google Scholar 

  27. Liu T, Wang Y, Yang Y, Sun M, Fan W, Bunger C, Wu C (2022) A multi-scale keypoint estimation network with self-supervision for spinal curvature assessment of idiopathic scoliosis from the imperfect dataset. Artif Intell Med 125:102235

    Article  PubMed  Google Scholar 

  28. Livieris IE, Iliadis L, Pintelas P (2021) On ensemble techniques of weight-constrained neural networks. Evol Syst 12:155–167

    Article  CAS  Google Scholar 

  29. Lyme Disease Rashes dataset, Kaggle. Retrieved from: https://www.kaggle.com/sshikamaru/lyme-disease-rashes

  30. Manjusha KK, Sankaranarayanan K, Seena P (2014) Prediction of different dermatological conditions using Naïve Bayesian classification. Int J Adv Res Comput Sci Software Eng 4(1):864–868

    Google Scholar 

  31. Masood A, Al- Jumaily A, Anam K (2015) Self-supervised learning model for skin cancer diagnosis. In: Proceedings of the 2015 7th International IEEE/EMBS Conference on Neural Engineering (NER), 2015, pp 1012–1015.  https://doi.org/10.1109/NER.2015.7146798

  32. Mehdy MM, Ng PY, Shair EF, Saleh Md, N.I. & Gomes, C. (2017) Artificial neural networks in image processing for early detection of breast cancer. Comput Math Methods Med 2017:2610628

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  33. Oren O, Gersh BJ, Bhatt DL (2020) Artificial intelligence in medical imaging: switching from radiographic pathological data to clinically meaningful endpoints. Lancet Digital Health 2(9):e486–e488

    Article  PubMed  Google Scholar 

  34. Rathod J, Waghmode V, Sodha A, Bhavathankar P (2018) Diagnosis of skin diseases using convolutional neural networks. Proceedings of the 2018 Second International Conference on Electronics, Communication and Aerospace Technology (ICECA), Coimbatore, India, pp 1048–1051

  35. Roy K, Chaudhuri SS, Ghosh S, Dutta SK, Chakraborty P, Sarkar R (2019) Skin disease detection based on different segmentation techniques. Proceedings of the 2019 International Conference on Opto-Electronics and Applied Optics (Optronix), Kolkata, India, 18–20 March 2019, pp 1–5,  https://doi.org/10.1109/OPTRONIX.2019.8862403

  36. Sarker AH, Nafi NSI, Islam MZ, Akhand MAH (2019) Progressive convolutional neural networks for skin lesion classification. Proceedings of the 2019 22nd IEEE International Conference on Computer and Information Technology (ICCIT), pp 1–6

  37. Seixas JL, Mantovani RG (2017) Decision trees for the detection of skin lesion patterns in lower limbs ulcers. In: Proceedings of the 2016 International Conference on Computational Science and Computational Intelligence (CSCI), Las Vegas, Nevada, USA, 15–17 December 2016, pp 677–681

  38. Shurrab S, Duwairi R (2022) Self-supervised learning methods and applications in medical imaging analysis: A survey. PeerJ Computer Science 8:e1045

    Article  PubMed  PubMed Central  Google Scholar 

  39. Sowrirajan H, Yang J, Ng AY, Rajpurkar P (2021) MoCo pretraining improves representation and transferability of chest X-ray models. In: Proceedings of the Fourth Conference on Medical Imaging with Deep Learning, Proceedings of Machine Learning Research, 143, 728-744

  40. Tan M, Le Q (2021) Efficientnetv2: Smaller models and faster training. Proceedings of the 38th International Conference on Machine Learning, PMLR, 139, pp 10096–10106

  41. Sumithra R, Suhil M, Guru DS (2015) Segmentation and classification of skin lesions for disease diagnosis. Procedia Comput Sci 45:76–85

    Article  Google Scholar 

  42. Verma AK, Pal S, Kumar S (2019) Classification of skin disease using ensemble data mining techniques. Asian Pac J Cancer Prev 20(6):1887–1894

    Article  PubMed  PubMed Central  Google Scholar 

  43. Zhang X, Wang S, Liu J, Tao C (2018) Towards improving diagnosis of skin diseases by combining deep neural network and human knowledge. BMC Med Inform Decis Mak 18:59

    Article  PubMed  PubMed Central  Google Scholar 

  44. Zhang N, Cai YX, Wang YY, Tian YT, Wang XL, Badami B (2020) Skin cancer diagnosis based on optimized convolutional neural network. Artif Intell Med 102:101756. Accessed 1 March 2022

  45. Zhang J, Zhang Y, Wang Y (2021) Progressive resizing ensemble network for skin lesion classification. Comput Methods Programs Biomed 210:106322

    Google Scholar 

Download references

Acknowledgements

The authors would like to thank the Editors and the anonymous reviewers for their valuable comments and suggestions which has helped to improve the quality and clarity of the paper.

Funding

The authors received no funding from an external source.

Author information

Authors and Affiliations

Authors

Contributions

All authors contributed to the conception and design of the study. Material preparation, data collection, data visualization and data analysis were performed by Daryl Jacob Jerrish, Om Nankar, and Shruti Patil. Advanced data analysis and validation were done by Ketan Kotecha, Ganeshsree Selvachandran and Ajith Abraham. Shilpa Gite and Shruti Patil supervised the project, Ketan Kotecha oversaw project administration. The first draft of the manuscript was written by Daryl Jacob Jerrish, Om Nankar, Shilpa Gite and Shruti Patil. The second draft was prepared and edited by Ketan Kotecha, Ganeshsree Selvachandran and Ajith Abraham. The final draft was edited and proof-read by Ganeshsree Selvachandran and Ajith Abraham. All authors commented on previous versions of the manuscript. All authors have read and approved the final manuscript.

Corresponding authors

Correspondence to Shilpa Gite or Ganeshsree Selvachandran.

Ethics declarations

Competing interests

The authors have no relevant financial or non-financial interests to disclose.

Authors’ declaration

This manuscript is the authors' original work and has not been published elsewhere. All authors have checked the manuscript and have agreed to this submission.

Ethical approval

This article does not contain any studies with human participants or animals performed by any of the authors.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Jerrish, D.J., Nankar, O., Gite, S. et al. Deep learning approaches for lyme disease detection: leveraging progressive resizing and self-supervised learning models. Multimed Tools Appl 83, 21281–21318 (2024). https://doi.org/10.1007/s11042-023-16306-9

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11042-023-16306-9

Keywords

Navigation