The chloroplast genome of Nicotiana sylvestris and Nicotiana tomentosiformis: complete sequencing confirms that the Nicotiana sylvestris progenitor is the maternal genome donor of Nicotiana tabacum

• Clarkson JJ, Lim KY, Kovarik A, Chase MW, Knapp S, Leitch AR (2005) Long-term genome diploidization in allopolyploid Nicotiana section Repandae (Solanaceae). New Phytol 168:241–252

  Article  PubMed  CAS  Google Scholar 

• Fulnecek J, Lim KY, Leitch AR, Kovarik A, Matyasek R (2002) Evolution and structure of 5S rDNA loci in allotetraploid Nicotiana tabacum and its putative parental species. Heredity 88:19–25

  Article  PubMed  CAS  Google Scholar 

• Goulding SE, Olmstead RG, Morden CW, Wolfe KH (1996) Ebb and flow of the chloroplast inverted repeat. Mol Gen Genet 252:195–206

  Article  PubMed  CAS  Google Scholar 

• Gray JC, Kung SD, Wildman SG, Sheen SJ (1974) Origin of Nicotiana tabacum L. detected by polypeptide composition of Fraction 1 proteins. Nature 252:226–227

  Article  PubMed  CAS  Google Scholar 

• Hershberg R, Altuvia S, Margalit H (2003) A survey of small RNA-encoding genes in Escherichia coli. Nucleic Acids Res 31(7):1813–1820

  Article  PubMed  CAS  Google Scholar 

• Hupfer H, Swiatek M, Hornung S, Herrmann RG, Maier RM, Chiu W-L, Sears B (2000) Complete nucleotide sequence of the Oenothera elata plastid chromosome, representing plastome I of the five distinguishable Euoenothera plastomes. Mol Gen Genet 263:581–585

  Article  PubMed  CAS  Google Scholar 

• Kung SD, Zhu YS, Shen GF (1982) Nicotiana chloroplast genome III. Chloroplast DNA evolution. Theor Appl Genet 61:73–79

  Article  CAS  Google Scholar 

• Martin W, Stoebe B, Goremykin V, Hansmann S, Hasegawa M, Kowallik KV (1998) Gene transfer to the nucleus and the evolution of chloroplasts. Nature 393:162–165

  Article  PubMed  CAS  Google Scholar 

• Maul JE, Lilly JW, Cui L, dePamphilis CW, Miller W, Harris EH, Stern DB (2002) The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats. Plant Cell 14:2659–2679

  Article  PubMed  CAS  Google Scholar 

• Okamuro JK, Goldberg RB (1985) Tobacco single-copy DNA is highly homologous to sequences present in the genomes of its diploid progenitors. Mol Gen Genet 198:290–298

  Article  CAS  Google Scholar 

• Olmstead R, Palmer JD (1991) Chloroplast DNA and systematics in the Solanaceae. In: Hawkes JG, Lester RN, Nee M, Estrada N (eds) Solanaceae III taxonomy, chemistry and evolution. Kew, Royal Botanic Gardens, Linnean Society of London, pp 301–320

• Palmer JD (1991) Plastid chromosomes: structure and evolution, In: Bogorad L, Vasil IK (eds) The molecular biology of plastids, Academic, San Diego, pp 5–53

  Google Scholar 

• Rolland N, Dorne A-J, Amoroso G, Sültemeyer DF, Joyard J, Rochaix J-D (1997) Disruption of the plastid ycf10 open reading frame affects uptake of inorganic carbon in the chloroplast of Chlamydomonas. EMBO J 16:6713–6726

  Article  PubMed  CAS  Google Scholar 

• Sasaki T, Yukawa Y, Miyamoto T, Obokata J, Sugiura M (2003) Identification of RNA editing sites in chloroplast transcripts from the maternal and paternal progenitors of tobacco (Nicotiana tabacum): comparative analysis shows the involvement of distinct trans-factors for ndhB editing. Mol Biol Evol 20:1028–1035

  Article  PubMed  CAS  Google Scholar 

• Schmitz-Linneweber C, Tillich M, Herrmann RG, Maier RM (2001) Heterologous, splicing-dependent RNA editing in chloroplasts: allotetraploidy provides trans-factors. EMBO J 20:4874–4883

  Article  PubMed  CAS  Google Scholar 

• Schmitz-Linneweber C, Regel R, Du TG, Hupfer H, Herrmann RG, Maier RM (2002) The plastid chromosome of Atropa belladonna and its comparison with that of Nicotiana tabacum: the role of RNA editing in generating divergence in the process of plant speciation. Mol Biol Evol 19:1602–1612

  PubMed  CAS  Google Scholar 

• Shinozaki K, Ohme M, Tanaka M, et al (1986) The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J 5:2043–2049

  PubMed  CAS  Google Scholar 

• Smith HH (1974) Nicotiana. In: King RC (eds) Handbook of Genetics 2. Plenum Press, New York, pp 281–314

  Google Scholar 

• Sugiura M (1992) The chloroplast genome. Plant Mol Biol 18:149–168

  Article  Google Scholar 

• Sugiyama Y, Watase Y, Nagase M, Makita N, Yagura S, Hirai A, Sugiura M (2005) The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants. Mol Genet Genomics 272:603–615

  Article  PubMed  CAS  Google Scholar 

• Tanaka M, Obokata J, Chunwongse J, Shinozaki K, Sugiura M (1987) Rapid splicing and stepwise processing of a transcript from the psbB operon in tobacco chloroplasts. Mol Gen Genet 209:427–431

  Article  PubMed  CAS  Google Scholar 

• Tsudzuki J, Tsudzuki T, Wakasugi T, Kinoshita K, Kondo T, Ito Y, Sugiura M (2004) Comparative analysis of the whole chloroplast genomes from rice, maize and wheat. Endocytobiosis Cell Res 15:339–344

  Google Scholar 

• Vera A, Sugiura M (1994) A novel RNA gene in the tobacco plastid genome: its possible role in the maturation of 16S rRNA. EMBO J 13:2211–2217

  PubMed  CAS  Google Scholar 

• Wakasugi T, Sugita M, Tsudzuki T, Sugiura M (1998) Updated gene map of tobacco chloroplast DNA. Plant Mol Biol Rep 16:231–241

  Article  CAS  Google Scholar 

• Wakasugi T, Tsudzuki T, Sugiura M (2001) The genomics of land plant chloroplasts: gene content and alteration of genomic information by RNA editing. Photosynth Res 70:107–118

  Article  PubMed  CAS  Google Scholar 

• Wolfe KH, Li W-H, Sharp PM (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci USA 84:9054–9058

  Article  PubMed  CAS  Google Scholar 

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