Abstract
Accurate and rapid clinical confirmation of psychiatric disorders based on imaging, symptom and scale data has long been difficult. Graph neural networks have received increasing attention in recent years due to their advantages in processing unstructured relational data, especially functional magnetic resonance imaging data. However, all existing methods have certain drawbacks. Individual graph methods are able to provide important biomarkers based on functional connectivity modelling, but their accuracy is low. Population graph methods, which improve the prediction performance by considering the similarity between patients, lack clinical interpretability. In this study, we propose a functional connectivity-based population graph (FCP-GNN) approach that possesses excellent classification capabilities while also providing significant biomarkers for clinical reference. The proposed method is divided into two phases. In the first phase, brain region features are learned hemispherically and used to identify biomarkers through a local-global dual-channel pooling layer. In the second phase, a heterogeneous population map is constructed based on gender. The feature information of same-sex and opposite-sex neighbours is learned separately using a hierarchical feature aggregation module to obtain the final embedding representation. The experiment results show that FCP-GNN achieves state-of-the-art performance in classification prediction work on two public datasets.
This work was supported by Ningbo Municipal Public Welfare Technology Research Project(2023S023) and Natural Science Foundation of Ningbo (2023J114).
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References
Almuqhim, F., Saeed, F.: ASD-Saenet: a sparse autoencoder, and deep-neural network model for detecting autism spectrum disorder (ASD) using FMRI data. Front. Comput. Neurosci. 15, 654315 (2021)
Bellani, M., Baiano, M., Brambilla, P.: Brain anatomy of major depression ii. focus on amygdala. Epidemiol. Psychiatr. Sci. 20(1), 33–36 (2011)
Cao, M., Yang, M., Qin, C., et al.: Using deepGCN to identify the autism spectrum disorder from multi-site resting-state data. Biomed. Signal Process. Control 70, 103015 (2021)
Craddock, C., Sikka, S., et al.: Towards automated analysis of connectomes: the configurable pipeline for the analysis of connectomes (C-PAC). Front. Neuroinform. 42(10.3389) (2013)
Desikan, R.S., Ségonne, F., Fischl, B., et al.: An automated labeling system for subdividing the human cerebral cortex on MRI scans into GYRAL based regions of interest. Neuroimage 31(3), 968–980 (2006)
Di Martino, A., Yan, C.G., Li, Q., et al.: The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism. Mol. Psychiatr. 19(6), 659–667 (2014)
Gazzaniga, M.S.: Forty-five years of split-brain research and still going strong. Nat. Rev. Neurosci. 6(8), 653–659 (2005)
Huang, Y., Chung, A.C.S.: Edge-variational graph convolutional networks for uncertainty-aware disease prediction. In: Martel, A.L., et al. (eds.) MICCAI 2020. LNCS, vol. 12267, pp. 562–572. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59728-3_55
Ingalhalikar, M., Smith, A., Parker, D., et al.: Sex differences in the structural connectome of the human brain. Proc. Natl. Acad. Sci. 111(2), 823–828 (2014)
Jiang, H., Cao, P., Xu, M., Yang, J., Zaiane, O.: Hi-GCN: a hierarchical graph convolution network for graph embedding learning of brain network and brain disorders prediction. Comput. Biol. Med. 127, 104096 (2020)
Kim, D., Lee, J.Y., Jeong, B.C., et al.: Overconnectivity of the right Heschl’s and inferior temporal gyrus correlates with symptom severity in preschoolers with autism spectrum disorder. Autism Res. 14(11), 2314–2329 (2021)
Kipf, T.N., Welling, M.: Semi-supervised classification with graph convolutional networks. arXiv preprint arXiv:1609.02907 (2016)
Korgaonkar, M.S., Fornito, A., Williams, L.M., Grieve, S.M.: Abnormal structural networks characterize major depressive disorder: a connectome analysis. Biol. Psychiat. 76(7), 567–574 (2014)
Li, D., Karnath, H.O., Xu, X.: Candidate biomarkers in children with autism spectrum disorder: a review of MRI studies. Neurosci. Bull. 33, 219–237 (2017)
Li, X., Zhou, Y., Dvornek, N., Zhang, M., et al.: BrainGNN: interpretable brain graph neural network for fMRI analysis. Med. Image Anal. 74, 102233 (2021)
Liang, Y., Xu, G.: Multi-level functional connectivity fusion classification framework for brain disease diagnosis. IEEE J. Biomed. Health Inform. 26(6), 2714–2725 (2022)
MacQueen, G., Frodl, T.: The hippocampus in major depression: evidence for the convergence of the bench and bedside in psychiatric research? Mol. Psychiatry 16(3), 252–264 (2011)
Monk, C.S., Peltier, S.J., Wiggins, J.L., et al.: Abnormalities of intrinsic functional connectivity in autism spectrum disorders. Neuroimage 47(2), 764–772 (2009)
Pan, J., Lin, H., Dong, Y., Wang, Y., Ji, Y.: MAMF-GCN: multi-scale adaptive multi-channel fusion deep graph convolutional network for predicting mental disorder. Comput. Biol. Med. 148, 105823 (2022)
Papakostas, G.I.: Managing partial response or nonresponse: switching, augmentation, and combination strategies for major depressive disorder. J. Clin. Psychiatry 70(suppl 6), 11183 (2009)
Parisot, S., Ktena, S.I., Ferrante, E., Lee, M., Moreno, R.G., Glocker, B., Rueckert, D.: Spectral graph convolutions for population-based disease prediction. In: Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (eds.) MICCAI 2017. LNCS, vol. 10435, pp. 177–185. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-66179-7_21
Rakhimberdina, Z., Murata, T.: Linear graph convolutional model for diagnosing brain disorders. In: Cherifi, H., Gaito, S., Mendes, J., Moro, E., Rocha, L. (eds.) Complex Networks and Their Applications VIII. COMPLEX NETWORKS 2019. Studies in Computational Intelligence, vol. 882, pp. 815–826. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-36683-4_65
Shi, Y., Huang, Z., et al.: Masked label prediction: Unified message passing model for semi-supervised classification. arXiv preprint arXiv:2009.03509 (2020)
Vigo, D., Thornicroft, G., Atun, R.: Estimating the true global burden of mental illness. The Lancet Psychiatry 3(2), 171–178 (2016)
Wen, G., Cao, P., Bao, H., et al.: MVS-GCN: a prior brain structure learning-guided multi-view graph convolution network for autism spectrum disorder diagnosis. Comput. Biol. Med. 142, 105239 (2022)
Yahata, N., Morimoto, J., Hashimoto, R., Lisi, G., et al.: A small number of abnormal brain connections predicts adult autism spectrum disorder. Nat. Commun. 7(1), 11254 (2016)
Yan, C.G., Chen, X., Li, L., et al.: Reduced default mode network functional connectivity in patients with recurrent major depressive disorder. Proc. Natl. Acad. Sci. 116(18), 9078–9083 (2019)
Yan, C.G., Wang, X.D., Zuo, X.N., Zang, Y.F.: DPABI: data processing & analysis for (resting-state) brain imaging. Neuroinformatics 14, 339–351 (2016)
Zhang, H., et al.: Classification of brain disorders in RS-fMRI via local-to-global graph neural networks. IEEE Trans. Med. Imaging 42(2), 444–455 (2023)
Zheng, S., Zhu, Z., Liu, Z., et al.: Multi-modal graph learning for disease prediction. IEEE Trans. Med. Imaging 41(9), 2207–2216 (2022)
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Gu, Y., Peng, S., Li, Y., Gao, L., Dong, Y. (2024). A Novel Population Graph Neural Network Based on Functional Connectivity for Mental Disorders Detection. In: Yang, DN., Xie, X., Tseng, V.S., Pei, J., Huang, JW., Lin, J.CW. (eds) Advances in Knowledge Discovery and Data Mining. PAKDD 2024. Lecture Notes in Computer Science(), vol 14648. Springer, Singapore. https://doi.org/10.1007/978-981-97-2238-9_17
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