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Using the Genetic Regulatory Evolving Artificial Networks (GReaNs) Platform for Signal Processing, Animat Control, and Artificial Multicellular Development

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Growing Adaptive Machines

Part of the book series: Studies in Computational Intelligence ((SCI,volume 557))

Abstract

Building a system that allows for pattern formation and morphogenesis is a first step towards a biologically-inspired developmental-evolutionary approach to generate complex neural networks. In this chapter we present one such system, for Genetic Regulatory evolving artificial Networks (GReaNs). We review the results of previous experiments in which we investigated the evolvability of the encoding used in GReaNs in problems which involved: (i) controlling development of multicellular 2-dimensional (2D) soft-bodied animats; (ii) controlling development of 3-dimensional (3D) multicellular artificial bodies with asymmetrical shapes and patterning; (iii) directed movement of unicellular animats in 2D; and (iv) processing signals at the level of single cells. We also report a recent introduction of spiking neuron models in GReaNs. We then present a road map towards using this system for evolution and development of neural networks.

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References

  1. J.C. Bongard, R. Pfeifer, Evolving complete agents using artificial ontogeny, in Morpho-functional Machines: The New Species, ed. by F. Hara, R. Pfeifer (Springer, Japan, 2003), pp. 237–258

    Google Scholar 

  2. R. Brette, W. Gerstner, Adaptive exponential integrate-and-fire model as an effective description of neuronal activity. J. Neurophysiol. 94(5), 3637–3642 (2005)

    Article  Google Scholar 

  3. A. Chavoya, I.R. Andalon-Garcia, C. Lopez-Martin, M.E. Meda-Campaña, Use of evolved artificial regulatory networks to simulate 3D cell differentiation. Biosystems 102(1), 41–48 (2010)

    Article  Google Scholar 

  4. S. Cussat-Blanc, H. Luga, Y. Duthen, From single cell to simple creature morphology and metabolism, in Artificial Life XI: Proceedings of the 11th International Conference on the Simulation and Synthesis of Living Systems (MIT Press, 2008), pp. 134–141

    Google Scholar 

  5. P. Dayan, L.F. Abbott, Theoretical Neuroscience: Computational and Mathematical Modeling of Neural Systems (The MIT Press, 1st edition, Cambridge, 2001)

    Google Scholar 

  6. F. Dellaert, R.D. Beer, A developmental model for the evolution of complete autonomous agents, in From Animals to Animats 4: Proceedings of the 4th International Conference on Simulation of Adaptive Behavior (SAB 1996) (MIT Press, 1996), pp. 393–401

    Google Scholar 

  7. P. Eggenberger Hotz, Evolving morphologies of simulated 3D organisms based on differential gene expression, in Proceedings of the 4th European Conference on Artificial Life (ECAL 1997) (MIT Press, 1997), pp. 205–213

    Google Scholar 

  8. N. Jakobi, Harnessing morphogenesis, in Proceedings of Information Processing in Cells and Tissues (1995), pp. 29–41

    Google Scholar 

  9. M. Joachimczak, T. Kowaliw, R. Doursat, B. Wróbel, Brainless bodies: controlling the development and behavior of multicellular animats by gene regulation and diffusive signals, in Artificial Life XIII: Proceedings of the 13th International Conference on the Simulation and Synthesis of Living Systems (MIT Press, 2012), pp. 349–356

    Google Scholar 

  10. M. Joachimczak, B. Wróbel, Evo-devo in silico: a model of a gene network regulating multicellular development in 3D space with artificial physics, in Artificial Life XI: Proceedings of the 11th International Conference on the Simulation and Synthesis of Living Systems (MIT Press, 2008), pp. 297–304

    Google Scholar 

  11. M. Joachimczak, B. Wróbel, Complexity of the search space in a model of artificial evolution of gene regulatory networks controlling 3D multicellular morphogenesis. Adv. Complex Syst. 12(03), 347–369 (2009)

    Article  MathSciNet  Google Scholar 

  12. M. Joachimczak, B. Wróbel, Evolving gene regulatory networks for real time control of foraging behaviours, in Artificial Life XII: Proceedings of the 12th International Conference on the Simulation and Synthesis of Living Systems (MIT Press, 2010), pp. 348–355

    Google Scholar 

  13. M. Joachimczak, B. Wróbel, Processing signals with evolving artificial gene regulatory networks, in Artificial Life XII: Proceedings of the 12th International Conference on the Simulation and Synthesis of Living Systems (MIT Press, 2010), pp. 203–210

    Google Scholar 

  14. M. Joachimczak, B. Wróbel, Evolution of the morphology and patterning of artificial embryos: scaling the tricolour problem to the third dimension, in Advances in Artificial Life. Darwin Meets von Neumann: Proceedings of the 10th European Conference on Artificial Life (ECAL 2009), vol. 5777, Lecture Notes in Computer Science (Springer, 2011), pp. 35–43

    Google Scholar 

  15. M. Joachimczak, B. Wróbel, Co-evolution of morphology and control of soft-bodied multicellular animats, in Proceedings of the 14th International Conference on Genetic and Evolutionary Computation, GECCO ’12 (ACM, 2012), pp. 561–568

    Google Scholar 

  16. M. Joachimczak, B. Wróbel, Evolution of robustness to damage in artificial 3-dimensional development. Biosystems 109(3), 498–505 (2012)

    Article  Google Scholar 

  17. M. Joachimczak, B. Wróbel, Open ended evolution of 3D multicellular development controlled by gene regulatory networks, in Artificial Life XIII: Proceedings of the 13th International Conference on the Simulation and Synthesis of Living Systems (MIT Press, 2012), pp. 67–74

    Google Scholar 

  18. J.F. Knabe, C.L. Nehaniv, M.J. Schilstra, Evolution and morphogenesis of differentiated multicellular organisms: autonomously generated diffusion gradients for positional information, in Artificial Life XI: Proceedings of the 11th International Conference on the Simulation and Synthesis of Living Systems (MIT Press, 20080, pp. 321–328

    Google Scholar 

  19. S. Kumar, P.J. Bentley, Biologically inspired evolutionary development, in Proceedings of the 5th International Conference on Evolvable Systems: From Biology to Hardware (ICES 2003), vol. 2606, Lecture Notes in Computer Science (Springer, 2003), pp. 57–68

    Google Scholar 

  20. L. Schramm, B. Sendhoff, An animat’s cell doctrine, in ECAL 2011: Proceedings of the 11th European Conference on the Synthesis and Simulation of Living Systems (MIT Press, 2011), pp. 739–746

    Google Scholar 

  21. J. Touboul, Bifurcation analysis of a general class of nonlinear integrate-and-fire neurons. SIAM J. Appl. Math 68(4), 1045–1079 (2008)

    Article  MATH  MathSciNet  Google Scholar 

  22. A. Wagner, Robustness and evolvability: a paradox resolved. Proc. R. Soc. B: Biol. Sci. 275(1630), 91–100 (2008)

    Article  Google Scholar 

  23. M.J. West-Eberhard, Developmental Plasticity and Evolution (Oxford University Press, 1st edition, USA, 2003)

    Google Scholar 

  24. L. Wolpert, The French Flag problem: a contribution to the discussion on pattern development and regulation, in The Origin of Life: Toward a Theoretical Biology ed. by C.H. Waddington (Edinburgh University Press, Edinburgh, 1968), pp. 125–133

    Google Scholar 

  25. B. Wróbel, A. Abdelmotaleb, M. Joachimczak, Evolving spiking neural networks in the GReaNs (gene regulatory evolving artificial networks) platform, in EvoNet2012: Evolving Networks, from Systems/Synthetic Biology to Computational Neuroscience Workshop at Artificial Life XIII (2012) pp. 19–22

    Google Scholar 

  26. B. Wróbel, M. Joachimczak, A. Montebelli, R. Lowe, The search for beauty: evolution of minimal cognition in an animat controlled by a gene regulatory network and powered by a metabolic system, vol. 7426 (Springer, Berlin Heidelberg, 2012), pp. 198–208

    Google Scholar 

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Acknowledgments

The work in BW’s lab is supported by the Polish National Science Centre (Project 2011/03/B/ST6/00399), with computational resources provided by the Tri-city Academic Computer Centre (TASK) and the Interdisciplinary Centre for Molecular and Mathematical Modeling (ICM, University of Warsaw; Project G33-8). We are grateful to Rene Doursat, Taras Kowaliw and Volker Steuber for discussions, and to Ahmed Abdelmotaleb for technical assistance in preparing Fig. 6.

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Correspondence to Borys Wróbel .

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Wróbel , B., Joachimczak, M. (2014). Using the Genetic Regulatory Evolving Artificial Networks (GReaNs) Platform for Signal Processing, Animat Control, and Artificial Multicellular Development. In: Kowaliw, T., Bredeche, N., Doursat, R. (eds) Growing Adaptive Machines. Studies in Computational Intelligence, vol 557. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-55337-0_6

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  • DOI: https://doi.org/10.1007/978-3-642-55337-0_6

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