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SHARE: A Semantic Web Query Engine for Bioinformatics

  • Conference paper
The Semantic Web (ASWC 2009)

Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 5926))

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Abstract

Driven by the goal of automating data analyses in the field of bioinformatics, SHARE (Semantic Health and Research Environment) is a specialized SPARQL engine that resolves queries against Web Services and SPARQL endpoints. Developed in conjunction with SHARE, SADI (Semantic Automated Discovery and Integration) is a standard for native-RDF services that facilitates the automated assembly of services into workflows, thereby eliminating the need for ad hoc scripting in the construction of a bioinformatics analysis pipeline.

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References

  1. Stein, L.: Creating a Bioinformatics Nation. Nature 417, 119–120 (2002)

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  2. The SADI Web Service Framework, http://sadiframework.org

  3. Quilitz, B., Leser, U.: Querying Distributed RDF Data Sources with SPARQL. In: Bechhofer, S., Hauswirth, M., Hoffmann, J., Koubarakis, M. (eds.) ESWC 2008. LNCS, vol. 5021, pp. 524–538. Springer, Heidelberg (2008)

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  4. SHARE demonstration, http://biordf.net/cardioSHARE/query

  5. SHARE predicates page, http://biordf.net/cardioSHARE/predicates.html

  6. Langegger, A., Wöß, W., Blöchl, M.: A Semantic Web Middleware for Virtual Data Integration on the Web. In: Bechhofer, S., Hauswirth, M., Hoffmann, J., Koubarakis, M. (eds.) ESWC 2008. LNCS, vol. 5021, pp. 493–507. Springer, Heidelberg (2008)

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  7. Martin, D., Paolucci, M., McIlraith, S., et al.: Bringing Semantics to Web Services: The OWL-S Approach. In: Cardoso, J., Sheth, A.P. (eds.) SWSWPC 2004. LNCS, vol. 3387, pp. 26–42. Springer, Heidelberg (2005)

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  8. Roman, D., Keller, U., Lausen, H., et al.: Web Service Modeling Ontology. Applied Ontology 1(1), 77–106 (2005)

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Author information

Authors and Affiliations

  1. Department of Medical Genetics, The Providence Heart + Lung Research Institute at St. Paul’s Hospital, University of British Columbia, Vancouver, BC, Canada

    Ben P. Vandervalk, E. Luke McCarthy & Mark D. Wilkinson

Authors
  1. Ben P. Vandervalk
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  2. E. Luke McCarthy
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  3. Mark D. Wilkinson
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Editor information

Editors and Affiliations

  1. Facultad de Informática, Dpto. de Inteligencia Artificial, Ontology Engineering Group, Universidad Politécnica de Madrid, Campus de Montegancedo s/n, 28660, Boadilla del Monte, Madrid

    Asunción Gómez-Pérez

  2. Shanghai Jiao Tong University, 200030, Shanghai, China

    Yong Yu

  3. Indiana University, USA

    Ying Ding

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© 2009 Springer-Verlag Berlin Heidelberg

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Cite this paper

Vandervalk, B.P., McCarthy, E.L., Wilkinson, M.D. (2009). SHARE: A Semantic Web Query Engine for Bioinformatics. In: Gómez-Pérez, A., Yu, Y., Ding, Y. (eds) The Semantic Web. ASWC 2009. Lecture Notes in Computer Science, vol 5926. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-10871-6_27

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  • DOI: https://doi.org/10.1007/978-3-642-10871-6_27

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-10870-9

  • Online ISBN: 978-3-642-10871-6

  • eBook Packages: Computer ScienceComputer Science (R0)

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