Abstract
We propose in this work a novel variational method for computing maps between surfaces by combining informative geometric features and regularizing forces including inverse consistency and harmonic energy. To tackle the ambiguity in defining homologous points on smooth surfaces, we design feature functions in the data term based on the Reeb graph of the Laplace-Beltrami eigenfunctions to quantitatively describe the global geometry of elongated anatomical structures. For inverse consistency and robustness, our method computes simultaneously the forward and backward map by iteratively solving partial differential equations (PDEs) on the surfaces. In our experiments, we successfully mapped 890 hippocampal surfaces and report statistically significant maps of atrophy rates between normal controls and patients with mild cognitive impairment (MCI) and Alzheimer’s disease (AD).
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Thompson, P.M., Hayashi, K.M., de Zubicaray, G.I., Janke, A.L., Rose, S.E., Semple, J., Hong, M.S., Herman, D.H., Gravano, D., Doddrell, D.M., Toga, A.W.: Mapping hippocampal and ventricular change in Alzheimer disease. NeuroImage 22(4), 1754–1766 (2004)
Cootes, T., Taylor, C., Cooper, D., Graham, J.: Active shape models-their training and application. Computer Vision and Image Understanding 61(1), 38–59 (1995)
Christensen, G.E., Rabbitt, R.D., Miller, M.I.: Deformable templates using large deformation kinematics. IEEE Trans. Imag. Process. 5(10), 1435–1447 (1996)
Joshi, S., Miller, M.I.: Landmark matching via large deformation diffeomorphisms. IEEE Trans. Imag. Process. 9(8), 1357–1370 (2000)
Gerig, G., Styner, M., Jones, D., Weinberger, D., Lieberman, J.: Shape analysis of brain ventricles using SPHARM. In: Proc. Workshop on Mathematical Methods in Biomedical Image Analysis, pp. 171–178 (2001)
Davies, R.H., Twining, C.J., Allen, P.D., Cootes, T.F., Taylor, C.J.: Shape discrimination in the hippocampus using an MDL model. In: Taylor, C.J., Noble, J.A. (eds.) IPMI 2003. LNCS, vol. 2732, pp. 38–50. Springer, Heidelberg (2003)
Gu, X., Wang, Y., Chan, T.F., Thompson, P.M., Yau, S.T.: Genus zero surface conformal mapping and its application to brain surface mapping. IEEE Trans. Med. Imag. 23(8), 949–958 (2004)
Wang, L., Miller, J.P., Gado, M.H., McKeel, D.W., Rothermich, M., Miller, M.I., Morris, J.C., Csernansky, J.G.: Abnormalities of hippocampal surface structure in very mild dementia of the alzheimer type. NeuroImage 30(1), 52–60 (2006)
Yeo, B., Sabuncu, M., Vercauteren, T., Ayache, N., Fischl, B., Golland, P.: Spherical demons: Fast surface registration. In: Metaxas, D., Axel, L., Fichtinger, G., Székely, G. (eds.) MICCAI 2008, Part I. LNCS, vol. 5241, pp. 745–753. Springer, Heidelberg (2008)
Shi, Y., Thompson, P.M., de Zubicaray, G., Rose, S.E., Tu, Z., Dinov, I., Toga, A.W.: Direct mapping of hippocampal surfaces with intrinsic shape context. NeuroImage 37(3), 792–807 (2007)
Pizer, S.M., Fritsch, D.S., Yushkevich, P.A., Johnson, V.E., Chaney, E.L.: Segmentation, registration, and measurement of shape variation via image object shape. IEEE Trans. Med. Imag. 18(10), 851–865 (1999)
Styner, M., Gerig, G., Lieberman, J., Jones, D., Weinberger, D.: Statistical shape analysis of neuroanatomical structures based on medial models. Med. Image. Anal. 7(3), 207–220 (2003)
Yushkevich, P.A., Zhang, H., Gee, J.C.: Continuous medial representation for anatomical structures. IEEE Trans. Med. Imag. 25(12), 1547–1564 (2006)
Christensen, G., Johnson, H.: Consistent image registration. IEEE Trans. Med. Imag. 20(7), 568–582 (2001)
Eells, J., Lemaire, L.: Two reports on harmonic maps. World Scientific, Singapore (1995)
Mémoli, F., Sapiro, G., Osher, S.: Solving variational problems and partial differential equations mapping into general target manifolds. Journal of Computational Physics 195(1), 263–292 (2004)
Osher, S., Sethian, J.: Fronts propagation with curvature-dependent speed: algorithms based on Hamilton-Jacobi formulations. Journal of computational physics 79(1), 12–49 (1988)
Bertalmío, M., Cheng, L., Osher, S., Sapiro, G.: Variational problems and partial differential equations on implicit surfaces. Journal of Computational Physics 174(2), 759–780 (2001)
Reuter, M., Wolter, F., Peinecke, N.: Laplace-Beltrami spectra as Shape-DNA of surfaces and solids. Computer-Aided Design 38, 342–366 (2006)
Qiu, A., Bitouk, D., Miller, M.I.: Smooth functional and structural maps on the neocortex via orthonormal bases of the Laplace-Beltrami operator. IEEE Trans. Med. Imag. 25(10), 1296–1306 (2006)
Niethammer, M., Reuter, M., Wolter, F.E., Bouix, S., Koo, N.P.M.S., Shenton, M.: Global medical shape analysis using the laplace-beltrami spectrum. In: Ayache, N., Ourselin, S., Maeder, A. (eds.) MICCAI 2007, Part I. LNCS, vol. 4791, pp. 850–857. Springer, Heidelberg (2007)
Shi, Y., Lai, R., Krishna, S., Sicotte, N., Dinov, I., Toga, A.W.: Anisotropic Laplace-Beltrami eigenmaps: Bridging Reeb graphs and skeletons. In: Proc. MMBIA, pp. 1–7 (2008)
Shi, Y., Lai, R., Kern, K., Sicotte, N., Dinov, I., Toga, A.W.: Harmonic surface mapping with Laplace-Beltrami eigenmaps. In: Metaxas, D., Axel, L., Fichtinger, G., Székely, G. (eds.) MICCAI 2008, Part II. LNCS, vol. 5242, pp. 147–154. Springer, Heidelberg (2008)
Belkin, M., Niyogi, P.: Laplacian eigenmaps for dimensionality reduction and data representation. Neural Computation 15(6), 1373–1396 (2003)
Reeb, G.: Sur les points singuliers d’une forme de Pfaff completement integrable ou d’une fonction nemérique. Comptes Rendus Acad. Sciences 222, 847–849 (1946)
Uhlenbeck, K.: Generic properties of eigenfunctions. Amer. J. of Math. 98(4), 1059–1078 (1976)
Shewchuk, J.R.: Delaunay refinement algorithms for triangular mesh generation. Comput. Geom. Theory & Applications 22(1–3), 21–74 (2002)
Morra, J., Tu, Z., Apostolova, L., Green, A., Avedissian, C., Madsen, S., Parikshak, N., Hua, N., Toga, A., Jack, C., Weiner, M., Weiner, M., Thompson, P.: The ADNI: Validation of a fully automated 3D hippocampal segmentation method using subjects with Alzheimer’s disease, mild cognitive impairment, and elderly controls. NeuroImage (in press)
Mueller, S., Weiner, M., Thal, L., Petersen, R., Jack, C., Jagust, W., Trojanowski, J., Toga, A., Beckett, L.: The Alzheimer’s disease neuroimaging initiative. Clin. North Am. 15, 869–877, xi–xii (2005)
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Shi, Y., Morra, J.H., Thompson, P.M., Toga, A.W. (2009). Inverse-Consistent Surface Mapping with Laplace-Beltrami Eigen-Features. In: Prince, J.L., Pham, D.L., Myers, K.J. (eds) Information Processing in Medical Imaging. IPMI 2009. Lecture Notes in Computer Science, vol 5636. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-02498-6_39
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DOI: https://doi.org/10.1007/978-3-642-02498-6_39
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