Nothing Special   »   [go: up one dir, main page]

Skip to main content

Multilayer Clustering: Biomarker Driven Segmentation of Alzheimer’s Disease Patient Population

  • Conference paper
Bioinformatics and Biomedical Engineering (IWBBIO 2015)

Part of the book series: Lecture Notes in Computer Science ((LNBI,volume 9043))

Included in the following conference series:

Abstract

Identification of biomarkers for the Alzheimer’s disease is a challenge and a very difficult task both for medical research and data analysis. In this work we present results obtained by application of a novel clustering tool. The goal is to identify subpopulations of the Alzheimer’s disease (AD) patients that are homogeneous in respect of available clinical and biological descriptors. The result presents a segmentation of the Alzheimer’s disease patient population and it may be expected that within each subpopulation separately it will be easier to identify connections between clinical and biological descriptors. Through the evaluation of the obtained clusters with AD subpopulations it has been noticed that for two of them relevant biological measurements (whole brain volume and intracerebral volume) change in opposite directions. If this observation is actually true it would mean that the diagnosed severe dementia problems are results of different physiological processes. The observation may have substantial consequences for medical research and clinical trial design. The used clustering methodology may be interesting also for other medical and biological domains.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

Similar content being viewed by others

References

  1. Weiner, M.W., et al.: The Alzheimer’s Disease Neuroimaging Initiative: A review of papers published since its inception. Alzheimer’s & Dementia 9(5), e111–e194 (2013)

    Google Scholar 

  2. Smith, G.E., Bondi, M.W.: Mild Cognitive Impairment and Dementia. Oxford University Press (2013)

    Google Scholar 

  3. Langbaum, J.B., et al.: Categorical and correlational analyses of baseline fluorodeoxyglucose positron emission tomography images from the Alzheimer’s Disease Neuroimaging Initiative (ADNI). Neuroimage 45(4), 1107–1116 (2009)

    Article  Google Scholar 

  4. Doraiswarny, P.M., et al.: Florbetapir F 18 amyloid PET and 36-month cognitive decline: a prospective multicenter study. Molecular Psychiatry 19(9), 1044–1051 (2014)

    Article  Google Scholar 

  5. Hinrichs, C., et al.: Predictive markers for AD in a multi-modality framework: an analysis of MCI progression in the ADNI population. Neuroimage 55(2), 574–589 (2011)

    Article  Google Scholar 

  6. Galili, T., Mitelpunkt, A., Shachar, N., Marcus-Kalish, M., Benjamini, Y.: Categorize, Cluster, and Classify: A 3-C Strategy for Scientific Discovery in the Medical Informatics Platform of the Human Brain Project. In: Džeroski, S., Panov, P., Kocev, D., Todorovski, L. (eds.) DS 2014. LNCS, vol. 8777, pp. 73–86. Springer, Heidelberg (2014)

    Chapter  Google Scholar 

  7. Gamberger, D., Mihelčić, M., Lavrač, N.: Multilayer clustering: A discovery experiment on country level trading data. In: Džeroski, S., Panov, P., Kocev, D., Todorovski, L. (eds.) DS 2014. LNCS, vol. 8777, pp. 87–98. Springer, Heidelberg (2014)

    Chapter  Google Scholar 

  8. Gan, G., Ma, C., Wu, J.: Data Clustering: Theory, Algorithms, and Applications. Society for Industrial and Applied Mathematics (2007)

    Google Scholar 

  9. Parida, L., Ramakrishnan, N.: Redescription mining: Structure theory and algorithms. In: Proc.of the Association for the Advancement of Artificial Intelligence, AAAI 2005, pp. 837–844 (2005)

    Google Scholar 

  10. Ramakrishnan, N., Kumar, D., Mishra, B., Potts, M., Helm, R.F.: Turning cartwheels: an alternating algorithm for mining redescriptions. In: Proc. of the 10th ACM Intern. Conf. on Knowledge Discovery and Data Mining, pp. 266–275 (2004)

    Google Scholar 

  11. Galbrun, E., Miettinen, P.: From black and white to full color: extending redescription mining outside the boolean world. Statistical Analysis and Data Mining, 284–303 (2012)

    Google Scholar 

  12. Zaki, M.J., Ramakrishnan, N.: Reasoning about sets using redescription mining. In: Proc. of the 11th ACM SIGKDD International Conference on Knowledge Discovery in Data Mining, KDD 2005, pp. 364–373 (2005)

    Google Scholar 

  13. Breiman, L.: Random forests. Machine Learning 45(1), 5–32 (2001)

    Article  MATH  Google Scholar 

  14. Pfahringer, B., Holmes, G., Wang, C.: Millions of random rules. In: Proc. of the Workshop on Advances in Inductive Rule Learning, 15th European Conference on Machine Learning, ECML 2004 (2004)

    Google Scholar 

  15. Evans, M.C.: etal. Volume changes in Alzheimer’s disease and mild cognitive impairment: cognitive associations. European Radiology 20(3), 674–680 (2010)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2015 Springer International Publishing Switzerland

About this paper

Cite this paper

Gamberger, D., Ženko, B., Mitelpunkt, A., Lavrač, N. (2015). Multilayer Clustering: Biomarker Driven Segmentation of Alzheimer’s Disease Patient Population. In: Ortuño, F., Rojas, I. (eds) Bioinformatics and Biomedical Engineering. IWBBIO 2015. Lecture Notes in Computer Science(), vol 9043. Springer, Cham. https://doi.org/10.1007/978-3-319-16483-0_13

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-16483-0_13

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-16482-3

  • Online ISBN: 978-3-319-16483-0

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics