Abstract
Tuning the regularization hyperparameter \(\alpha \) in inverse problems has been a longstanding problem. This is particularly true in the case of fetal brain magnetic resonance imaging, where an isotropic high-resolution volume is reconstructed from motion-corrupted low-resolution series of two-dimensional thick slices. Indeed, the lack of ground truth images makes challenging the adaptation of \(\alpha \) to a given setting of interest in a quantitative manner. In this work, we propose a simulation-based approach to tune \(\alpha \) for a given acquisition setting. We focus on the influence of the magnetic field strength and availability of input low-resolution images on the ill-posedness of the problem. Our results show that the optimal \(\alpha \), chosen as the one maximizing the similarity with the simulated reference image, significantly improves the super-resolution reconstruction accuracy compared to the generally adopted default regularization values, independently of the selected reconstruction pipeline. Qualitative validation on clinical data confirms the importance of tuning this parameter to the targeted clinical image setting. The simulated data and their reconstructions are available at https://zenodo.org/record/8123677.
This work is supported by the Swiss National Science Foundation through grants 182602 and 141283, and by the Eranet Neuron MULTIFACT project (SNSF 31NE30_203977). We acknowledge access to the facilities and expertise of the CIBM Center for Biomedical Imaging, a Swiss research center of excellence founded and supported by CHUV, UNIL, EPFL, UNIGE and HUG.
Priscille de Dumast and Thomas Sanchez contributed equally to this work. Hélène Lajous and Mertixell Bach Cuadra share senior authroship.
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References
Griffiths, P., et al.: Use of MRI in the diagnosis of fetal brain abnormalities in utero (MERIDIAN): a multicentre, prospective cohort study. The Lancet 389(10068), 538–546 (2017)
E. W. Group: Role of prenatal magnetic resonance imaging in fetuses with isolated mild or moderate ventriculomegaly in the era of neurosonography: international multicenter study. Ultrasound in Obstet. Gynecol. 56(3), 340–347 (2020)
Gholipour, A., et al.: Fetal MRI: a technical update with educational aspirations. Concepts Magn. Reson. Part A 43(6), 237–266 (2014)
Saleem, S.N.: Fetal MRI: an approach to practice: a review. J. Adv. Res. 5(5), 507–523 (2014)
Kuklisova-Murgasova, M., Quaghebeur, G., Rutherford, M.A., Hajnal, J.V., Schnabel, J.A.: Reconstruction of fetal brain MRI with intensity matching and complete outlier removal. Med. Image Anal. 16(8), 1550–1564 (2012). https://doi.org/10.1016/j.media.2012.07.004
Tourbier, S., Bresson, X., Hagmann, P., Thiran, J.-P., Meuli, R., Cuadra, M.B.: An efficient total variation algorithm for super-resolution in fetal brain MRI with adaptive regularization. NeuroImage 118, 584–597 (2015). https://doi.org/10.1016/j.neuroimage.2015.06.018
Ebner, M., et al.: An automated framework for localization, segmentation and super-resolution reconstruction of fetal brain MRI, NeuroImage 206, 116324 (2020)
Uus, A., et al.: Retrospective motion correction in foetal MRI for clinical applications: existing methods, applications and integration into clinical practice. Br. J. Radiol. 95, 20220071 (2022)
Galatsanos, N.P., Katsaggelos, A.K.: Methods for choosing the regularization parameter and estimating the noise variance in image restoration and their relation. IEEE Trans. on Image Process. 1(3), 322–336 (1992). https://doi.org/10.1109/83.148606
Afkham, B.M., et al.: Learning regularization parameters of inverse problems via deep neural networks. Inverse Prob. 37(10), 105017 (2021)
Payette, K., et al.: An automatic multi-tissue human fetal brain segmentation benchmark using the fetal tissue annotation dataset. Sci. Data 8(1), 167 (2021). https://doi.org/10.1038/s41597-021-00946-3
Lajous, H., et al.: A fetal brain magnetic resonance acquisition numerical phantom (FaBiAN). Sci. Rep. 12(1), 8682 (2022)
Medical-Image-Analysis-Laboratory/FaBiAN: FaBiAN v2.0, Jul. (2023). https://doi.org/10.5281/zenodo.5471094
Gholipour, A., et al.: A normative spatiotemporal MRI atlas of the fetal brain for automatic segmentation and analysis of early brain growth. Sci. Rep. 7(1), 476 (2017)
Weigel, M.: Extended phase graphs: dephasing, RF pulses, and echoes-pure and simple. J. Magn. Reson. Imaging 41(2), 266–295 (2015)
Rousseau, F., et al.: Registration-based approach for reconstruction of high-resolution in utero fetal MR brain images. Acad. Radiol. 13(9), 1072–1081 (2006)
Oubel, E., Koob, M., Studholme, C., Dietemann, J.-L., Rousseau, F.: Reconstruction of scattered data in fetal diffusion MRI. Med. Image Anal. 16(1), 28–37 (2012)
Wang, Z., et al.: Image quality assessment: from error visibility to structural similarity. IEEE Trans. Image Process. 13(4), 600–612 (2004)
Khawam, M., et al.: Fetal brain biometric measurements on 3D super-resolution reconstructed t2-weighted MRI: an intra-and inter-observer agreement study. Front. Pediatr. 9, 639746 (2021)
Tierney, A., et al.: Brain development and the role of experience in the early years. Zero to three 30(2), 9 (2009)
Payette, K., Kottke, R., Jakab, A.: Efficient multi-class fetal brain segmentation in high resolution MRI reconstructions with noisy labels. In: Hu, Y., et al. (eds.) Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis: First International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4-8, 2020, Proceedings, pp. 295–304. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-60334-2_29
de Dumast, P., et al.: Synthetic magnetic resonance images for domain adaptation: application to fetal brain tissue segmentation. In: 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI) (2022)
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de Dumast, P., Sanchez, T., Lajous, H., Bach Cuadra, M. (2023). Simulation-Based Parameter Optimization for Fetal Brain MRI Super-Resolution Reconstruction. In: Greenspan, H., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023. MICCAI 2023. Lecture Notes in Computer Science, vol 14226. Springer, Cham. https://doi.org/10.1007/978-3-031-43990-2_32
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