Abstract
Distributed computing gives medical services organizations significant examination and monetary advantages. Cloud administrations guarantee that enormous amounts of such delicate information will be put away and overseen safely. The quality succession labs send crude or gathered data through the Internet to a few arrangement libraries under conventional progression of quality data. Cloud service use will reduce DNA sequencing storage costs to a minimum. In this work, we demonstrated a new genomic bioinformatic system, using Amazon Cloud Services, that stores and processes genomic sequence information. A critical assignment in bio-informatics, which helps in the recognizable proof and plan of sickness drug, is the genuine ID of exon locales in deoxyribonucleic corrosive (DNA) arrangement. All exon recognizable proof procedures depend on three fundamental periodicity (TBP) properties of exons. In contrast with a few different strategies, versatile sign preparing procedures have been promising. This paper utilizes the most extreme blunder standardized least logarithmic outright distinction (MENLLAD) calculation likewise its marked variations to build up various Adaptive Exon Predictors (AEPs) with less computational multifaceted nature. At last, a presentation assessment is performed for various AEPs utilizing different standard quality information successions got from National Biotechnology Information Center (NBI) genomic grouping data set, for example, Sensitivity (Sn), Specificity (Sp) and Precision (Pr) estimations.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Kathleen, Ch., Nocle, P., Maria Kmoppers, B.: The adoption of cloud computing in the field of genomics research: the influence of ethical and legal issues. PLoS ONE 11, 1–33 (2016)
Nic Lincoln Stein, D.: The case for cloud computing in genome informatics. Genome Biol. 11, 1–7 (2010)
Ning, L.W., Lin, H., Ding, H., Huang, J., Rao, N., Guo, F.B.: Predicting bacterial essential genes using on sequence composition information. Genet. Mol. Res. 13, 4564–4572 (2014)
Dickerson, J.E., Zhu, A., Robertson, D.L., Hentges, K.E.: Defining the role of essential genes in human disease. PloS ONE 6, 1–10 (2011)
Singh, A.K., Kumar Srivastava, V.: The three base periodicity of protein coding sequences and its application in exon prediction. In: 2020 7th International Conference on Signal Processing and Integrated Networks (SPIN), Noida, India, pp. 1089–1094 (2020). https://doi.org/10.1109/SPIN48934.2020.9071068
Ahmad, M., Jung, L.T., Bhuiyan, A.: From DNA to protein: why genetic code context of nucleotides for DNA signal processing? A review. Biomed. Signal Process. Control 34, 44–63 (2017)
Sun, T.M., Wang, Y.C., Wang, F., Du, J.Z., Mao, C.Q.: Cancer stem cell therapy using doxorubicin conjugated to gold nanoparticles via hydrazone bonds. Biomaterials 35, 836–845 (2014)
Massadeh, S., et al.: Nano-materials for gene therapy: an efficient way in overcoming challenges of gene delivery. J. Biosens. Bioelectron. 7(1), 1–12 (2016)
Li, M., Li, Q., Gamage Upeksha, G., Wang, J., Wu, F., Pan, Y.: Prioritization of orphan disease-causing genes using topological feature and go similarity between proteins in interaction networks. Sci. China Life Sci. 57, 1064–1071 (2014)
Scalzitti, N., Jeannin-Girardon, A., Collet, P., et al.: A benchmark study of ab initio gene prediction methods in diverse eukaryotic organisms. BMC Genomics 21, 293 (2020). https://doi.org/10.1186/s12864-020-6707-9
Maji, S., Garg, D.: Progress in gene prediction: principles and challenges. Curr. Bioinform. 8, 226–243 (2013)
Saberkari, H., Shamsi, M., Heravi, H., Sedaaghi, M.H.: A novel fast algorithm for exon prediction in eukaryotes genes using linear predictive coding model and goertzel algorithm based on the Z-curve. Int. J. Comput. Appl. 67, 25–38 (2013)
Tiwari, S., Ramachandran, S., Bhattacharya, A., Bhattacharya, S., Ramaswamy, R.: Prediction of probable genes by Fourier analysis of genomic sequences. Comput. Appl. Biosci. 13(3), 263–270 (1997)
Ismail, Md.A., Ye, Y., Tang, H.: Gene finding in metatranscriptomic sequences. BMC Bioinform. 15, 01–08 (2014)
Voss, R.F.: Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. Phys. Rev. Lett. 68(25), 3805–3808 (1992)
Liu, G., Luan, Y.: Identification of protein coding regions in the eukaryotic DNA sequences based on Marple algorithm and wavelet packets transform. Abstr. Appl. Anal. 2014, 1–14 (2014)
Mahin, G., Hamed, K.: Bioinformatics approaches for gene finding. Int. J. Sci. Res. Sci. Technol. 1, 12–15 (2015)
Putluri, S.R., Rahman, Md.Z.U.: Identification of protein coding region in DNA sequence using novel adaptive exon predictor. J. Sci. Ind. Res. 77, 1–5 (2018)
Azuma, Y., Onami, S.: Automatic cell identification in the unique system of invariant embryogenesis in caenorhabditis elegans. Biomed. Eng. Lett. 4. 328–337 (2014)
Putluri, S., Rahman, Md.Z.U.: Computer based genomic sequences analysis using least mean forth adaptive algorithms. J. Theor. Appl. Inf. Technol. 95(9), 2006–2014 (2017)
Putluri, S., Rahman, Md.Z.U.: New adaptive exon predictors for identifying protein coding regions in DNA sequence. ARPN J. Eng. Appl. Sci. 11, 13540–13549 (2016)
Putluri, S., Rahman, Md.Z.U., Fathima, S.Y.: Cloud based adaptive exon prediction for DNA analysis. IET Healthc. Technol. Lett. 5(1), 1–6 (2018)
Rahman, Md.Z.U., Karthik, G.V.K.S., Fathima, S.Y., L-Ekukaille, A.: An efficient cardiac signal enhancement using time-frequency realization of leaky adaptive noise cancelers for remote health monitoring systems. Measurements 46, 3815–3835 (2013)
Rahman, Md.Z.U., Ahmed Shaik, R., Rama Koti Reddy, D.V.: Efficient and simplified adaptive noise cancelers for ECG sensor based remote health monitoring. IEEE Sens. J. 91(3), 566–573 (2012)
Haykin, S.O.: Adaptive Filter Theory, 5th edn. Pearson Education Ltd., London (2014)
Sayin, Md.O., Denizcan Vanli, N. , Serdar Kozat, S.: A novel family of adaptive filtering algorithms based on the logarithmic cost. IEEE Trans. Signal Process. 62(17), 4411–4424 (2014)
National Center for Biotechnology Information. www.ncbi.nlm.nih.gov/
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2021 Springer Nature Switzerland AG
About this paper
Cite this paper
Rahman, M.Z.U., Haneesh, A.C., Reddy, B.S.S., Surekha, S., Srinivasareddy, P. (2021). Cloud Based Exon Prediction Using Maximum Error Normalized Logarithmic Algorithms. In: Singh, M., Tyagi, V., Gupta, P.K., Flusser, J., Ören, T., Sonawane, V.R. (eds) Advances in Computing and Data Sciences. ICACDS 2021. Communications in Computer and Information Science, vol 1440. Springer, Cham. https://doi.org/10.1007/978-3-030-81462-5_60
Download citation
DOI: https://doi.org/10.1007/978-3-030-81462-5_60
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-81461-8
Online ISBN: 978-3-030-81462-5
eBook Packages: Computer ScienceComputer Science (R0)