Nothing Special   »   [go: up one dir, main page]

Skip to main content

Cloud Based Exon Prediction Using Maximum Error Normalized Logarithmic Algorithms

  • Conference paper
  • First Online:
Advances in Computing and Data Sciences (ICACDS 2021)

Abstract

Distributed computing gives medical services organizations significant examination and monetary advantages. Cloud administrations guarantee that enormous amounts of such delicate information will be put away and overseen safely. The quality succession labs send crude or gathered data through the Internet to a few arrangement libraries under conventional progression of quality data. Cloud service use will reduce DNA sequencing storage costs to a minimum. In this work, we demonstrated a new genomic bioinformatic system, using Amazon Cloud Services, that stores and processes genomic sequence information. A critical assignment in bio-informatics, which helps in the recognizable proof and plan of sickness drug, is the genuine ID of exon locales in deoxyribonucleic corrosive (DNA) arrangement. All exon recognizable proof procedures depend on three fundamental periodicity (TBP) properties of exons. In contrast with a few different strategies, versatile sign preparing procedures have been promising. This paper utilizes the most extreme blunder standardized least logarithmic outright distinction (MENLLAD) calculation likewise its marked variations to build up various Adaptive Exon Predictors (AEPs) with less computational multifaceted nature. At last, a presentation assessment is performed for various AEPs utilizing different standard quality information successions got from National Biotechnology Information Center (NBI) genomic grouping data set, for example, Sensitivity (Sn), Specificity (Sp) and Precision (Pr) estimations.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 99.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 129.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Kathleen, Ch., Nocle, P., Maria Kmoppers, B.: The adoption of cloud computing in the field of genomics research: the influence of ethical and legal issues. PLoS ONE 11, 1–33 (2016)

    Google Scholar 

  2. Nic Lincoln Stein, D.: The case for cloud computing in genome informatics. Genome Biol. 11, 1–7 (2010)

    Google Scholar 

  3. Ning, L.W., Lin, H., Ding, H., Huang, J., Rao, N., Guo, F.B.: Predicting bacterial essential genes using on sequence composition information. Genet. Mol. Res. 13, 4564–4572 (2014)

    Article  Google Scholar 

  4. Dickerson, J.E., Zhu, A., Robertson, D.L., Hentges, K.E.: Defining the role of essential genes in human disease. PloS ONE 6, 1–10 (2011)

    Google Scholar 

  5. Singh, A.K., Kumar Srivastava, V.: The three base periodicity of protein coding sequences and its application in exon prediction. In: 2020 7th International Conference on Signal Processing and Integrated Networks (SPIN), Noida, India, pp. 1089–1094 (2020). https://doi.org/10.1109/SPIN48934.2020.9071068

  6. Ahmad, M., Jung, L.T., Bhuiyan, A.: From DNA to protein: why genetic code context of nucleotides for DNA signal processing? A review. Biomed. Signal Process. Control 34, 44–63 (2017)

    Article  Google Scholar 

  7. Sun, T.M., Wang, Y.C., Wang, F., Du, J.Z., Mao, C.Q.: Cancer stem cell therapy using doxorubicin conjugated to gold nanoparticles via hydrazone bonds. Biomaterials 35, 836–845 (2014)

    Article  Google Scholar 

  8. Massadeh, S., et al.: Nano-materials for gene therapy: an efficient way in overcoming challenges of gene delivery. J. Biosens. Bioelectron. 7(1), 1–12 (2016)

    Google Scholar 

  9. Li, M., Li, Q., Gamage Upeksha, G., Wang, J., Wu, F., Pan, Y.: Prioritization of orphan disease-causing genes using topological feature and go similarity between proteins in interaction networks. Sci. China Life Sci. 57, 1064–1071 (2014)

    Google Scholar 

  10. Scalzitti, N., Jeannin-Girardon, A., Collet, P., et al.: A benchmark study of ab initio gene prediction methods in diverse eukaryotic organisms. BMC Genomics 21, 293 (2020). https://doi.org/10.1186/s12864-020-6707-9

    Article  Google Scholar 

  11. Maji, S., Garg, D.: Progress in gene prediction: principles and challenges. Curr. Bioinform. 8, 226–243 (2013)

    Article  Google Scholar 

  12. Saberkari, H., Shamsi, M., Heravi, H., Sedaaghi, M.H.: A novel fast algorithm for exon prediction in eukaryotes genes using linear predictive coding model and goertzel algorithm based on the Z-curve. Int. J. Comput. Appl. 67, 25–38 (2013)

    Google Scholar 

  13. Tiwari, S., Ramachandran, S., Bhattacharya, A., Bhattacharya, S., Ramaswamy, R.: Prediction of probable genes by Fourier analysis of genomic sequences. Comput. Appl. Biosci. 13(3), 263–270 (1997)

    Google Scholar 

  14. Ismail, Md.A., Ye, Y., Tang, H.: Gene finding in metatranscriptomic sequences. BMC Bioinform. 15, 01–08 (2014)

    Google Scholar 

  15. Voss, R.F.: Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. Phys. Rev. Lett. 68(25), 3805–3808 (1992)

    Google Scholar 

  16. Liu, G., Luan, Y.: Identification of protein coding regions in the eukaryotic DNA sequences based on Marple algorithm and wavelet packets transform. Abstr. Appl. Anal. 2014, 1–14 (2014)

    Google Scholar 

  17. Mahin, G., Hamed, K.: Bioinformatics approaches for gene finding. Int. J. Sci. Res. Sci. Technol. 1, 12–15 (2015)

    Google Scholar 

  18. Putluri, S.R., Rahman, Md.Z.U.: Identification of protein coding region in DNA sequence using novel adaptive exon predictor. J. Sci. Ind. Res. 77, 1–5 (2018)

    Google Scholar 

  19. Azuma, Y., Onami, S.: Automatic cell identification in the unique system of invariant embryogenesis in caenorhabditis elegans. Biomed. Eng. Lett. 4. 328–337 (2014)

    Google Scholar 

  20. Putluri, S., Rahman, Md.Z.U.: Computer based genomic sequences analysis using least mean forth adaptive algorithms. J. Theor. Appl. Inf. Technol. 95(9), 2006–2014 (2017)

    Google Scholar 

  21. Putluri, S., Rahman, Md.Z.U.: New adaptive exon predictors for identifying protein coding regions in DNA sequence. ARPN J. Eng. Appl. Sci. 11, 13540–13549 (2016)

    Google Scholar 

  22. Putluri, S., Rahman, Md.Z.U., Fathima, S.Y.: Cloud based adaptive exon prediction for DNA analysis. IET Healthc. Technol. Lett. 5(1), 1–6 (2018)

    Google Scholar 

  23. Rahman, Md.Z.U., Karthik, G.V.K.S., Fathima, S.Y., L-Ekukaille, A.: An efficient cardiac signal enhancement using time-frequency realization of leaky adaptive noise cancelers for remote health monitoring systems. Measurements 46, 3815–3835 (2013)

    Google Scholar 

  24. Rahman, Md.Z.U., Ahmed Shaik, R., Rama Koti Reddy, D.V.: Efficient and simplified adaptive noise cancelers for ECG sensor based remote health monitoring. IEEE Sens. J. 91(3), 566–573 (2012)

    Google Scholar 

  25. Haykin, S.O.: Adaptive Filter Theory, 5th edn. Pearson Education Ltd., London (2014)

    Google Scholar 

  26. Sayin, Md.O., Denizcan Vanli, N. , Serdar Kozat, S.: A novel family of adaptive filtering algorithms based on the logarithmic cost. IEEE Trans. Signal Process. 62(17), 4411–4424 (2014)

    Google Scholar 

  27. National Center for Biotechnology Information. www.ncbi.nlm.nih.gov/

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Rahman, M.Z.U., Haneesh, A.C., Reddy, B.S.S., Surekha, S., Srinivasareddy, P. (2021). Cloud Based Exon Prediction Using Maximum Error Normalized Logarithmic Algorithms. In: Singh, M., Tyagi, V., Gupta, P.K., Flusser, J., Ören, T., Sonawane, V.R. (eds) Advances in Computing and Data Sciences. ICACDS 2021. Communications in Computer and Information Science, vol 1440. Springer, Cham. https://doi.org/10.1007/978-3-030-81462-5_60

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-81462-5_60

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-81461-8

  • Online ISBN: 978-3-030-81462-5

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics