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Frozen-to-Paraffin: Categorization of Histological Frozen Sections by the Aid of Paraffin Sections and Generative Adversarial Networks

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Simulation and Synthesis in Medical Imaging (SASHIMI 2021)

Abstract

In contrast to paraffin sections, frozen sections can be quickly generated during surgical interventions. This procedure allows surgeons to wait for histological findings during the intervention to base intra-operative decisions on the outcome of the histology. However, compared to paraffin sections, the quality of frozen sections is typically lower, leading to a higher ratio of miss-classification. In this work, we investigated the effect of the section type on automated decision support approaches for classification of thyroid cancer. This was enabled by a data set consisting of pairs of sections for individual patients. Moreover, we investigated, whether a frozen-to-paraffin translation could help to optimize classification scores. Finally, we propose a specific data augmentation strategy to deal with a small amount of training data and to increase classification accuracy even further.

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Change history

  • 21 September 2021

    In an older version of this paper, there was an error in the affiliation of the author Sebastien Couillard-Despres. This has been corrected.

References

  1. Almahairi, A., Rajeshwar, S., Sordoni, A., Bachman, P., Courville, A.C.: Augmented cycleGAN: learning many-to-many mappings from unpaired data. In: Proceedings of International Conference on Machine Learning (ICML 2018) (2018)

    Google Scholar 

  2. Bentaieb, A., Hamarneh, G.: Adversarial stain transfer for histopathology image analysis. IEEE Trans. Med. Imaging 37(3), 792–802 (2018)

    Article  Google Scholar 

  3. Dimitriou, N., Arandjelović, O., Caie, P.D.: Deep learning for whole slide image analysis: an overview. Front. Med. 6 (2019). https://doi.org/10.3389/fmed.2019.00264

  4. Gadermayr, M., Gupta, L., Appel, V., Boor, P., Klinkhammer, B.M., Merhof, D.: Generative adversarial networks for facilitating stain-independent supervised and unsupervised segmentation: a study on kidney histology. IEEE Trans. Med. Imaging 38(10), 2293–2302 (2019)

    Article  Google Scholar 

  5. Gupta, L., Klinkhammer, B.M., Boor, P., Merhof, D., Gadermayr, M.: Stain independent segmentation of whole slide images: a case study in renal histology. In: Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2018) (2018)

    Google Scholar 

  6. Halicek, M., et al.: Head and neck cancer detection in digitized whole-slide histology using convolutional neural networks. Sci. Rep. 9(1) (2019)

    Google Scholar 

  7. Hou, L., Samaras, D., Kurc, T.M., Gao, Y., Davis, J.E., Saltz, J.H.: Patch-based convolutional neural network for whole slide tissue image classification. In: Proceedings of the International Conference on Computer Vision (CVPR 2016) (2016)

    Google Scholar 

  8. Huang, X., Liu, M.Y., Belongie, S., Kautz, J.: Multimodal unsupervised image-to-image translation. In: Proceedings of the European Conference on Computer Vision (ECCV 2018) (2018)

    Google Scholar 

  9. Huber, G.F., et al.: Intraoperative frozen-section analysis for thyroid nodules. Arch. Otolaryngol.-Head Neck Surg. 133(9), 874 (2007)

    Article  Google Scholar 

  10. Isola, P., Zhu, J.Y., Zhou, T., Efros, A.A.: Image-to-image translation with conditional adversarial networks. In: Proceedings of the International Conference on Computer Vision and Pattern Recognition (CVPR 2017) (2017)

    Google Scholar 

  11. Leteurtre, E., et al.: Why do frozen sections have limited value in encapsulated or minimally invasive follicular carcinoma of the thyroid? Am. J. Clin. Pathol. 115(3), 370–374 (2001)

    Article  Google Scholar 

  12. Liu, M.Y., Breuel, T., Kautz, J.: Unsupervised image-to-image translation networks. In: Guyon, I., et al. (eds.) Advances in Neural Information Processing Systems (NIPS), pp. 700–708 (2017)

    Google Scholar 

  13. Najah, H., Tresallet, C.: Role of frozen section in the surgical management of indeterminate thyroid nodules. Gland Surg. 8(S2), 112–117 (2019)

    Article  Google Scholar 

  14. Osamura, R.Y., Hunt, J.L.: Current practices in performing frozen sections for thyroid and parathyroid pathology. Virchows Arch. 453(5), 433–440 (2008)

    Article  Google Scholar 

  15. Park, T., Efros, A.A., Zhang, R., Zhu, J.Y.: Contrastive learning for conditional image synthesis. In: Proceedings of the European Conference on Computer Vision (ECCV 2020) (2020)

    Google Scholar 

  16. Udelsman, R., Westra, W.H., Donovan, P.I., Sohn, T.A., Cameron, J.L.: Randomized prospective evaluation of frozen-section analysis for follicular neoplasms of the thyroid. Ann. Surg. 233(5), 716–722 (2001)

    Article  Google Scholar 

  17. Wang, S., Yang, D.M., Rong, R., Zhan, X., Xiao, G.: Pathology image analysis using segmentation deep learning algorithms. Am. J. Pathol. 189(9), 1686–1698 (2019)

    Article  Google Scholar 

  18. Wolterink, J.M., Dinkla, A.M., Savenije, M.H.F., Seevinck, P.R., van den Berg, C.A.T., Išgum, I.: Deep MR to CT synthesis using unpaired data. In: Tsaftaris, S.A., Gooya, A., Frangi, A.F., Prince, J.L. (eds.) SASHIMI 2017. LNCS, vol. 10557, pp. 14–23. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-68127-6_2

    Chapter  Google Scholar 

  19. Yi, Z., Zhang, H., Tan, P., Gong, M.: DualGAN: unsupervised dual learning for image-to-image translation. In: Proceedings of the IEEE International Conference on Computer Vision (ICCV 2017) (2017)

    Google Scholar 

  20. Zhu, J.Y., Park, T., Isola, P., Efros, A.A.: Unpaired image-to-image translation using cycle-consistent adversarial networks. In: Proceedings of the International Conference on Computer Vision (ICCV 2017) (2017)

    Google Scholar 

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Acknowledgement

This work was partially funded by the County of Salzburg under grant number FHS-2019-10-KIAMed.

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Correspondence to Michael Gadermayr .

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Gadermayr, M. et al. (2021). Frozen-to-Paraffin: Categorization of Histological Frozen Sections by the Aid of Paraffin Sections and Generative Adversarial Networks. In: Svoboda, D., Burgos, N., Wolterink, J.M., Zhao, C. (eds) Simulation and Synthesis in Medical Imaging. SASHIMI 2021. Lecture Notes in Computer Science(), vol 12965. Springer, Cham. https://doi.org/10.1007/978-3-030-87592-3_10

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  • DOI: https://doi.org/10.1007/978-3-030-87592-3_10

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