Abstract
Studies have shown that the expansion of the lateral ventricle is closely related to many neurodegenerative diseases, so the segmentation of the lateral ventricle plays an important role in the diagnosis of related diseases. However, traditional segmentation methods are subjective, laborious, and time-consuming. Furthermore, due to the uneven magnetic field, irregular, small, and discontinuous shape of every single slice, the segmentation of the lateral ventricle is still a great challenge. In this paper, we propose an efficient and automatic lateral ventricle segmentation method in magnetic resonance (MR) images using a multi-scale feature fusion convolutional neural network (MFF-Net). First, we create a multi-center clinical dataset with a total of 117 patient MR scans. This dataset comes from two different hospitals and the images have different sampling intervals, different ages, and distinct image dimensions. Second, we present a new multi-scale feature fusion module (MSM) to capture different levels of feature information of lateral ventricles through various receptive fields. In particular, MSM can also extract the multi-scale lateral ventricle region feature information to solve the problem of insufficient feature extraction of small object regions with the deepening of network structure. Finally, extensive experiments have been conducted to evaluate the performance of the proposed MFF-Net. In addition, to verify the performance of the proposed method, we compare MFF-Net with seven state-of-the-art segmentation models. Both quantitative results and visual effects show that our MFF-Net outperforms other models and can achieve more accurate segmentation performance. The results also indicate that our model can be applied in clinical practice and is a feasible method for lateral ventricle segmentation.
F. Ye and Z. Wang—Co-first authors, contributed equally to this work.
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References
Alom, M.Z., Hasan, M., Yakopcic, C., Taha, T.M., Asari, V.K.: Recurrent residual convolutional neural network based on U-Net (R2U-Net) for medical image segmentation. arXiv preprint arXiv:1802.06955 (2018)
Baaré, W.F., et al.: Volumes of brain structures in twins discordant for schizophrenia. Arch. Gen. Psychiatry 58(1), 33–40 (2001)
Badrinarayanan, V., Kendall, A., Cipolla, R.: SegNet: a deep convolutional encoder-decoder architecture for image segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 39(12), 2481–2495 (2017)
Biswas, A., Bhattacharya, P., Maity, S.: An efficient volumetric segmentation of cerebral lateral ventricles. Procedia Comput. Sci. 133, 561–568 (2018)
Chen, L.-C., Zhu, Y., Papandreou, G., Schroff, F., Adam, H.: Encoder-decoder with Atrous separable convolution for semantic image segmentation. In: Ferrari, V., Hebert, M., Sminchisescu, C., Weiss, Y. (eds.) ECCV 2018. LNCS, vol. 11211, pp. 833–851. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-01234-2_49
Chen, W., Smith, R., Ji, S.Y., Najarian, K.: Automated segmentation of lateral ventricles in brain CT images. In: 2008 IEEE International Conference on Bioinformatics and Biomeidcine Workshops, pp. 48–55. IEEE (2008)
Gan, K.: Automated segmentation of the lateral ventricle in MR images of human brain. In: 2015 IEEE International Conference on Digital Signal Processing (DSP), pp. 139–142. IEEE (2015)
Gu, R., et al.: CA-Net: comprehensive attention convolutional neural networks for explainable medical image segmentation. arXiv preprint arXiv:2009.10549 (2020)
Hu, K., et al.: Retinal vessel segmentation of color fundus images using multiscale convolutional neural network with an improved cross-entropy loss function. Neurocomputing 309, 179–191 (2018)
Long, J., Shelhamer, E., Darrell, T.: Fully convolutional networks for semantic segmentation. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 3431–3440 (2015)
Ng, H.F., Chuang, C.H., Hsu, C.H.: Extraction and analysis of structural features of lateral ventricle in brain medical images. In: 2012 Sixth International Conference on Genetic and Evolutionary Computing, pp. 35–38. IEEE (2012)
Oktay, O., et al.: Attention U-Net: learning where to look for the pancreas. arXiv preprint arXiv:1804.03999 (2018)
Qiu, W., et al.: Automatic segmentation approach to extracting neonatal cerebral ventricles from 3D ultrasound images. Med. Image Anal. 35, 181–191 (2017)
Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28
Schnack, H., Pol, H.H., Baaré, W.F.C., Viergever, M., Kahn, R.: Automatic segmentation of the ventricular system from MR images of the human brain. Neuroimage 14(1), 95–104 (2001)
Shao, M., et al.: Shortcomings of ventricle segmentation using deep convolutional networks. In: Stoyanov, D., et al. (eds.) MLCN/DLF/IMIMIC -2018. LNCS, vol. 11038, pp. 79–86. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-02628-8_9
Takikawa, T., Acuna, D., Jampani, V., Fidler, S.: Gated-SCNN: gated shape CNNs for semantic segmentation. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 5229–5238 (2019)
Wu, J., Zhang, Y., Tang, X.: Simultaneous tissue classification and lateral ventricle segmentation via a 2D U-net driven by a 3D fully convolutional neural network. In: 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), pp. 5928–5931. IEEE (2019)
Zhu, Y., Chen, Z., Zhao, S., Xie, H., Guo, W., Zhang, Y.: ACE-Net: biomedical image segmentation with augmented contracting and expansive paths. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11764, pp. 712–720. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32239-7_79
Acknowledgements
This work was supported by the National Natural Science Foundation of China under Grants 61802328, 61972333 and 61771415, the Natural Science Foundation of Hunan Province of China under Grant 2019JJ50606, and the Research Foundation of Education Department of Hunan Province of China under Grant 19B561.
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Ye, F., Wang, Z., Hu, K., Zhu, S., Gao, X. (2021). Automated Segmentation of Lateral Ventricle in MR Images Using Multi-scale Feature Fusion Convolutional Neural Network. In: Del Bimbo, A., et al. Pattern Recognition. ICPR International Workshops and Challenges. ICPR 2021. Lecture Notes in Computer Science(), vol 12666. Springer, Cham. https://doi.org/10.1007/978-3-030-68780-9_28
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