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Deep Distance Map Regression Network with Shape-Aware Loss for Imbalanced Medical Image Segmentation

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Machine Learning in Medical Imaging (MLMI 2020)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 12436))

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Abstract

Small object segmentation, like tumor segmentation, is a difficult and critical task in the field of medical image analysis. Although deep learning based methods have achieved promising performance, they are restricted to the use of binary segmentation mask and suffer from the imbalance problem. In this research, we aim to tackle this limitation by adopting distance map as a novel ground truth and employing distance map regression as a proxy of the existing segmentation framework. Specially, we propose a new segmentation framework that incorporates the existing binary segmentation network and a light weight regression network (dubbed as LR-Net). Thus, the LR-Net can convert the conventional classification-based segmentation into a regression task and leverage the rich information of distance maps. Additionally, we derive a shape-aware loss by employing distance maps as penalty map to capture the complete shape of an object. We evaluated our approach on MICCAI 2017 Liver Tumor Segmentation (LiTS) Challenge dataset and a clinical dataset. Experimental results show that our approach outperforms the classification-based methods as well as other existing state-of-the-arts. Code is available at https://github.com/Huiyu-Li/Deep-Distance-Map-Regression.

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References

  1. Abraham, N., Khan, N.M.: A novel focal Tversky loss function with improved attention U-Net for lesion segmentation. In: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), pp. 683–687. IEEE (2019)

    Google Scholar 

  2. Audebert, N., Boulch, A., Le Saux, B., Lefèvre, S.: Distance transform regression for spatially-aware deep semantic segmentation. Comput. Vis. Image Underst. 189, 102809 (2019)

    Article  Google Scholar 

  3. Bilic, P., et al.: The liver tumor segmentation benchmark (LiTS). arXiv preprint arXiv:1901.04056 (2019)

  4. Crum, W.R., Camara, O., Hill, D.L.: Generalized overlap measures for evaluation and validation in medical image analysis. IEEE Trans. Med. Imaging 25(11), 1451–1461 (2006)

    Article  Google Scholar 

  5. Dangi, S., Linte, C.A., Yaniv, Z.: A distance map regularized CNN for cardiac cine MR image segmentation. Med. Phys. 46(12), 5637–5651 (2019)

    Article  Google Scholar 

  6. Gao, Y., et al.: FocusNet: imbalanced large and small organ segmentation with an end-to-end deep neural network for head and neck CT images. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11766, pp. 829–838. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32248-9_92

    Chapter  Google Scholar 

  7. Havaei, M., et al.: Brain tumor segmentation with deep neural networks. Med. Image Anal. 35, 18–31 (2017)

    Article  Google Scholar 

  8. He, K., Zhang, X., Ren, S., Sun, J.: Delving deep into rectifiers: surpassing human-level performance on imagenet classification. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 1026–1034 (2015)

    Google Scholar 

  9. Huang, Y., et al.: A liver fibrosis staging method using cross-contrast network. Expert Syst. Appl. 130, 124–131 (2019)

    Article  Google Scholar 

  10. Jiang, H., Shi, T., Bai, Z., Huang, L.: AHCNet: an application of attention mechanism and hybrid connection for liver tumor segmentation in CT volumes. IEEE Access 7, 24898–24909 (2019)

    Article  Google Scholar 

  11. Lin, T.Y., Goyal, P., Girshick, R., He, K., Dollár, P.: Focal loss for dense object detection. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 2980–2988 (2017)

    Google Scholar 

  12. Ma, J., et al.: How distance transform maps boost segmentation CNNs: an empirical study. In: Medical Imaging with Deep Learning (2020)

    Google Scholar 

  13. Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28

    Chapter  Google Scholar 

  14. Salehi, S.S.M., Erdogmus, D., Gholipour, A.: Tversky loss function for image segmentation using 3D fully convolutional deep networks. In: Wang, Q., Shi, Y., Suk, H.-I., Suzuki, K. (eds.) MLMI 2017. LNCS, vol. 10541, pp. 379–387. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-67389-9_44

    Chapter  Google Scholar 

  15. Valverde, S., et al.: Improving automated multiple sclerosis lesion segmentation with a cascaded 3D convolutional neural network approach. NeuroImage 155, 159–168 (2017)

    Article  Google Scholar 

  16. Wong, K.C.L., Moradi, M., Tang, H., Syeda-Mahmood, T.: 3D segmentation with exponential logarithmic loss for highly unbalanced object sizes. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018. LNCS, vol. 11072, pp. 612–619. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00931-1_70

    Chapter  Google Scholar 

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Correspondence to Xiabi Liu .

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Li, H., Liu, X., Boumaraf, S., Gong, X., Liao, D., Ma, X. (2020). Deep Distance Map Regression Network with Shape-Aware Loss for Imbalanced Medical Image Segmentation. In: Liu, M., Yan, P., Lian, C., Cao, X. (eds) Machine Learning in Medical Imaging. MLMI 2020. Lecture Notes in Computer Science(), vol 12436. Springer, Cham. https://doi.org/10.1007/978-3-030-59861-7_24

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  • DOI: https://doi.org/10.1007/978-3-030-59861-7_24

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-59860-0

  • Online ISBN: 978-3-030-59861-7

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