Nothing Special   »   [go: up one dir, main page]

Skip to main content

A Hybrid NSGA-II for Matching Biomedical Ontology

  • Conference paper
  • First Online:
Recent Advances in Intelligent Information Hiding and Multimedia Signal Processing (IIH-MSP 2018)

Part of the book series: Smart Innovation, Systems and Technologies ((SIST,volume 109))

Abstract

Over the recent years, ontologies are widely used in the biomedical domains. However, biomedical ontology heterogeneity problem hamper the cooperation between intelligent applications based on biomedical ontologies. It is crucial to establish correspondences between the heterogeneous biomedical concepts in different ontologies, which is so-called biomedical ontology matching. Approaches based on Multi-Objective Evolutionary Algorithm (MOEA), such as NSGA-II, are emerging as a new methodology to solve the ontology matching problem. In this paper, to further improve the quality of biomedical ontology alignments, a hybrid NSGA-II is proposed, which modifies the knee solutions in the Pareto front by using a local search method. Experiment utilizes two biomedical ontology matching tracks provided by Ontology Alignment Evaluation Initiative (OAEI 2017). The experimental results show that our approach outperforms the participants of OAEI 2017 and NSGA-II based ontology matching technique.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

Notes

  1. 1.

    http://oaei.ontologymatching.org/2017/anatomy/index.html.

  2. 2.

    http://www.cs.ox.ac.uk/isg/projects/SEALS/oaei/2017/.

  3. 3.

    http://oaei.ontologymatching.org/2017.

  4. 4.

    http://oaei.ontologymatching.org/2017/results/index.html.

References

  1. Acampora, G., Kaymak, U., Loia, V., Vitiello, A.: Applying NSGA-II for solving the ontology alignment problem. In: IEEE International Conference on Systems, man, and Cybernetics, Manchester, United Kingdom, pp. 1098–1103, October 2013

    Google Scholar 

  2. Bechikh, S., Said, L.B., Ghédira, K.: Searching for knee regions of the pareto front using mobile reference points. Soft Comput. 15(9), 1807–1823 (2011)

    Article  Google Scholar 

  3. Bodenreider, O.: The unified medical language system (UMLS): integrating biomedical terminology. Nucl. Acids Res. 32(suppl\(\_1\)), D267–D270 (2004)

    Article  Google Scholar 

  4. Cimino, J.J., Zhu, X.: The practical impact of ontologies on biomedical informatics. Yearb. Med. Inform. 2006, 124–135 (2006)

    Article  Google Scholar 

  5. De Potter, P., Cools, H., Depraetere, K., Mels, G., Debevere, P., De Roo, J., Huszka, C., Colaert, D., Mannens, E., Van de Walle, R.: Semantic patient information aggregation and medicinal decision support. Comput. Methods Programs Biomed. 108(2), 724–735 (2012)

    Article  Google Scholar 

  6. Deb, K., Pratap, A., Agarwal, S., Meyarivan, T.: A fast and elitist multiobjective genetic algorithm: NSGA-II. IEEE Trans. Evol. Comput. 6(2), 182–197 (2002)

    Article  Google Scholar 

  7. Isern, D., Sánchez, D., Moreno, A.: Ontology-driven execution of clinical guidelines. Comput. Methods Programs Biomed. 107(2), 122–139 (2012)

    Article  Google Scholar 

  8. Kondrak, G.: N-gram similarity and distance. In: International Symposium on String Processing and Information Retrieval, pp. 115–126. Springer (2005)

    Google Scholar 

  9. López-Fernández, H., Reboiro-Jato, M., Glez-Peña, D., Aparicio, F., Gachet, D., Buenaga, M., Fdez-Riverola, F.: BioAnnote: a software platform for annotating biomedical documents with application in medical learning environments. Comput. Methods Programs Biomed. 111(1), 139–147 (2013)

    Article  Google Scholar 

  10. Maedche, A., Staab, S.: Measuring similarity between ontologies. In: Proceedings of the 14th International Conference on Knowledge Engineering and Knowledge Management, Ischia Island, Italy, pp. 251–263, July 2002

    Chapter  Google Scholar 

  11. Rijsberge, C.J.V.: Information Retrieval. University of Glasgow, Butterworth, London (1975)

    Google Scholar 

  12. Xingsi, X., Aihong, R.: An evolutionary algorithm based ontology alignment extracting technology. J. Netw. Intell. 2(2), 205–212 (2017)

    Google Scholar 

  13. Xue, X., Wang, Y., Hao, W.: Optimizing ontology alignments by using NSGA-II. Int. Arab. J. Inf. Technol. 12(2), 176–182 (2015)

    Google Scholar 

  14. Xue, X., Wang, Y.: Optimizing ontology alignments through a memetic algorithm using both matchFmeasure and unanimous improvement ratio. Artif. Intell. 223, 65–81 (2015)

    Article  MathSciNet  Google Scholar 

  15. Xue, X., Wang, Y.: Using memetic algorithm for instance coreference resolution. IEEE Trans. Knowl. Data Eng. 28(2), 580–591 (2016)

    Article  Google Scholar 

Download references

Acknowledgment

This work is supported by the National Natural Science Foundation of China (Nos. 61503082 and 61403121), Natural Science Foundation of Fujian Province (No. 2016J05145), Fundamental Research Funds for the Central Universities (No. 2015B20214), Scientific Research Startup Foundation of Fujian University of Technology (No. GY-Z15007), Scientific Research Development Foundation of Fujian University of Technology (No. GY-Z17162) and Fujian Province Outstanding Young Scientific Researcher Training Project (No. GY-Z160149).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Xingsi Xue .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Xue, X., Chen, J., Chen, J., Chen, D. (2019). A Hybrid NSGA-II for Matching Biomedical Ontology. In: Pan, JS., Ito, A., Tsai, PW., Jain, L. (eds) Recent Advances in Intelligent Information Hiding and Multimedia Signal Processing. IIH-MSP 2018. Smart Innovation, Systems and Technologies, vol 109. Springer, Cham. https://doi.org/10.1007/978-3-030-03745-1_1

Download citation

Publish with us

Policies and ethics