Abstract
Over the recent years, ontologies are widely used in the biomedical domains. However, biomedical ontology heterogeneity problem hamper the cooperation between intelligent applications based on biomedical ontologies. It is crucial to establish correspondences between the heterogeneous biomedical concepts in different ontologies, which is so-called biomedical ontology matching. Approaches based on Multi-Objective Evolutionary Algorithm (MOEA), such as NSGA-II, are emerging as a new methodology to solve the ontology matching problem. In this paper, to further improve the quality of biomedical ontology alignments, a hybrid NSGA-II is proposed, which modifies the knee solutions in the Pareto front by using a local search method. Experiment utilizes two biomedical ontology matching tracks provided by Ontology Alignment Evaluation Initiative (OAEI 2017). The experimental results show that our approach outperforms the participants of OAEI 2017 and NSGA-II based ontology matching technique.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Acampora, G., Kaymak, U., Loia, V., Vitiello, A.: Applying NSGA-II for solving the ontology alignment problem. In: IEEE International Conference on Systems, man, and Cybernetics, Manchester, United Kingdom, pp. 1098–1103, October 2013
Bechikh, S., Said, L.B., Ghédira, K.: Searching for knee regions of the pareto front using mobile reference points. Soft Comput. 15(9), 1807–1823 (2011)
Bodenreider, O.: The unified medical language system (UMLS): integrating biomedical terminology. Nucl. Acids Res. 32(suppl\(\_1\)), D267–D270 (2004)
Cimino, J.J., Zhu, X.: The practical impact of ontologies on biomedical informatics. Yearb. Med. Inform. 2006, 124–135 (2006)
De Potter, P., Cools, H., Depraetere, K., Mels, G., Debevere, P., De Roo, J., Huszka, C., Colaert, D., Mannens, E., Van de Walle, R.: Semantic patient information aggregation and medicinal decision support. Comput. Methods Programs Biomed. 108(2), 724–735 (2012)
Deb, K., Pratap, A., Agarwal, S., Meyarivan, T.: A fast and elitist multiobjective genetic algorithm: NSGA-II. IEEE Trans. Evol. Comput. 6(2), 182–197 (2002)
Isern, D., Sánchez, D., Moreno, A.: Ontology-driven execution of clinical guidelines. Comput. Methods Programs Biomed. 107(2), 122–139 (2012)
Kondrak, G.: N-gram similarity and distance. In: International Symposium on String Processing and Information Retrieval, pp. 115–126. Springer (2005)
López-Fernández, H., Reboiro-Jato, M., Glez-Peña, D., Aparicio, F., Gachet, D., Buenaga, M., Fdez-Riverola, F.: BioAnnote: a software platform for annotating biomedical documents with application in medical learning environments. Comput. Methods Programs Biomed. 111(1), 139–147 (2013)
Maedche, A., Staab, S.: Measuring similarity between ontologies. In: Proceedings of the 14th International Conference on Knowledge Engineering and Knowledge Management, Ischia Island, Italy, pp. 251–263, July 2002
Rijsberge, C.J.V.: Information Retrieval. University of Glasgow, Butterworth, London (1975)
Xingsi, X., Aihong, R.: An evolutionary algorithm based ontology alignment extracting technology. J. Netw. Intell. 2(2), 205–212 (2017)
Xue, X., Wang, Y., Hao, W.: Optimizing ontology alignments by using NSGA-II. Int. Arab. J. Inf. Technol. 12(2), 176–182 (2015)
Xue, X., Wang, Y.: Optimizing ontology alignments through a memetic algorithm using both matchFmeasure and unanimous improvement ratio. Artif. Intell. 223, 65–81 (2015)
Xue, X., Wang, Y.: Using memetic algorithm for instance coreference resolution. IEEE Trans. Knowl. Data Eng. 28(2), 580–591 (2016)
Acknowledgment
This work is supported by the National Natural Science Foundation of China (Nos. 61503082 and 61403121), Natural Science Foundation of Fujian Province (No. 2016J05145), Fundamental Research Funds for the Central Universities (No. 2015B20214), Scientific Research Startup Foundation of Fujian University of Technology (No. GY-Z15007), Scientific Research Development Foundation of Fujian University of Technology (No. GY-Z17162) and Fujian Province Outstanding Young Scientific Researcher Training Project (No. GY-Z160149).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2019 Springer Nature Switzerland AG
About this paper
Cite this paper
Xue, X., Chen, J., Chen, J., Chen, D. (2019). A Hybrid NSGA-II for Matching Biomedical Ontology. In: Pan, JS., Ito, A., Tsai, PW., Jain, L. (eds) Recent Advances in Intelligent Information Hiding and Multimedia Signal Processing. IIH-MSP 2018. Smart Innovation, Systems and Technologies, vol 109. Springer, Cham. https://doi.org/10.1007/978-3-030-03745-1_1
Download citation
DOI: https://doi.org/10.1007/978-3-030-03745-1_1
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-03744-4
Online ISBN: 978-3-030-03745-1
eBook Packages: Intelligent Technologies and RoboticsIntelligent Technologies and Robotics (R0)