Abstract
Recombinant DNA
Partially supported by MIUR Project ”Linguaggi Formali e Automi: Metodi, Modelli e Applicazioni” (2003), by the contribution of EU Commission under The Fifth Framework Programme (project MolCoNet IST-2001-32008) and by 60 % Project ”Linguaggi formali e codici: modelli e caratterizzazioni strutturali” (University of Salerno, 2004).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Berstel, J., Perrin, D.: Theory of Codes. Academic Press, New York (1985)
Bonizzoni, P., De Felice, C., Mauri, G., Zizza, R.: Linear splicing and syntactic monoid (2004) (submitted)
Bonizzoni, P., De Felice, C., Mauri, G., Zizza, R.: Decision problems on linear and circular splicing. In: Ito, M., Toyama, M. (eds.) DLT 2002. LNCS, vol. 2450, pp. 78–92. Springer, Heidelberg (2003)
Bonizzoni, P., De Felice, C., Mauri, G., Zizza, R.: Regular languages generated by reflexive finite linear splicing systems. In: Ésik, Z., Fülöp, Z. (eds.) DLT 2003. LNCS, vol. 2710, pp. 134–145. Springer, Heidelberg (2003)
Bonizzoni, P., De Felice, C., Mauri, G., Zizza, R.: DNA and circular splicing. In: Condon, A., Rozenberg, G. (eds.) DNA 2000. LNCS, vol. 2054, pp. 117–129. Springer, Heidelberg (2001)
Bonizzoni, P., De Felice, C., Mauri, G., Zizza, R.: Circular splicing and regularity. Theoretical Informatics and Appl. 38, 189–228 (2004)
Bonizzoni, P., De Felice, C., Mauri, G., Zizza, R.: On the power of circular splicing (2004) (submitted)
Bonizzoni, P., De Felice, C., Zizza, R.: The structure of reflexive regular splicing languages via Schützenberger constants. Theoretical Computer Science (2004) (to appear)
Bonizzoni, P., Ferretti, C., Mauri, G., Zizza, R.: Separating some splicing models. Information Processing Letters 76(6), 255–259 (2001)
Bonizzoni, P., Mauri, G.: Regular splicing languages and subclasses. Theoretical Computer Science (2004) (to appear)
Culik, K., Harju, T.: Splicing semigroups of dominoes and DNA. Discrete Applied Math. 31, 261–277 (1991)
Fagnot, I.: Splicing Systems and Chomsky hierarchy. In: Proc. of Journees Montoises 2004, Lieges, Belgium (2004)
Laun, E.G.: Constants and splicing systems, PHD Thesis, Binghamton University (1999)
Goode, E., Pixton, D.: Recognizing splicing languages: syntactic monoids and simultaneous pumping (2004) (submitted), available from http://www.math.binghamton.edu/dennis/Papers/index.html
Head, T.: Formal language theory and DNA: an analysis of the generative capacity of specific recombinant behaviours. Bull. Math. Biol. 49, 737–759 (1987)
Head, T.: Splicing languages generated with one sided context. In: Paun, G. (ed.) Computing with bio-molecules: theory and experiments. Springer, Heidelberg (1998)
Head, T., Paun, G., Pixton, D.: Language theory and molecular genetics: generative mechanisms suggested by DNA recombination. In: Rozenberg, G., Salomaa, A. (eds.) Handbook of Formal Languages, vol. 2, pp. 295–360. Springer, Heidelberg (1996)
Harrison, M.A.: Introduction to Formal Language Theory. Addison-Wesley, Reading (1978)
Hopcroft, J.E., Motwani, R., Ullman, J.D.: Introduction to Automata Theory, Languages, and Computation. Addison-Wesley, Reading (2001)
Kim, S.M.: An algorithm for identifying spliced languages. In: Jiang, T., Lee, D.T. (eds.) COCOON 1997. LNCS, vol. 1276, pp. 403–411. Springer, Heidelberg (1997)
Kim, S.M.: Computational modeling for genetic splicing systems. SIAM Journal of Computing 26, 1284–1309 (1997)
McNaughton, R., Papert, S.: Counter-Free Automata. MIT Press, Cambridge (1971)
Paun, G.: On the splicing operation. Discrete Applied Math. 70, 57–79 (1996)
Paun, G., Rozenberg, G., Salomaa, A.: DNA computing, New Computing Paradigms. Springer, Heidelberg (1998)
Perrin, D.: Finite Automata. In: Van Leeuwen, J. (ed.) Handbook of Theoretical Computer Science, vol. B, pp. 1–57. Elsevier, Amsterdam (1990)
Pixton, D.: Linear and circular splicing systems. In: Proc. of 1st Int. Symp. on Intelligence in Neural and Biological Systems, pp. 181–188. IEEE Computer Society Press, Los Alamitos (1996), Silver Spring
Pixton, D.: Regularity of splicing languages. Discrete Applied Math. 69, 101–124 (1996)
Schützenberger, M.P.: Sur certaines opérations de fermeture dans les langages rationnels. Symposia Mathematica 15, 245–253 (1975)
Verlan, S., Zizza, R.: 1–splicing vs. 2–splicing: separating results. In: Proc. of Words 2003, Turku, Finland, pp. 320–331 (2003)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2005 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Bonizzoni, P., De Felice, C., Mauri, G. (2005). Recombinant DNA ,Gene Splicing as Generative Devices of Formal Languages. In: Cooper, S.B., Löwe, B., Torenvliet, L. (eds) New Computational Paradigms. CiE 2005. Lecture Notes in Computer Science, vol 3526. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11494645_8
Download citation
DOI: https://doi.org/10.1007/11494645_8
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-540-26179-7
Online ISBN: 978-3-540-32266-5
eBook Packages: Computer ScienceComputer Science (R0)