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Yuri Matsuzaki
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2020 – today
- 2020
- [j7]Kento Aoyama, Masanori Kakuta, Yuri Matsuzaki, Takashi Ishida, Masahito Ohue, Yutaka Akiyama
:
Development of Computational Pipeline Software for Genome/Exome Analysis on the K Computer. Supercomput. Front. Innov. 7(1): 37-54 (2020)
2010 – 2019
- 2018
- [j6]Takanori Hayashi, Yuri Matsuzaki, Keisuke Yanagisawa
MEGADOCK-Web: an integrated database of high-throughput structure-based protein-protein interaction predictions. BMC Bioinform. 19-S(4): 61-72 (2018) - 2014
- [j5]Masahito Ohue
MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers. Bioinform. 30(22): 3281-3283 (2014) - 2013
- [j4]Yuri Matsuzaki, Nobuyuki Uchikoga, Masahito Ohue
MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments. Source Code Biol. Medicine 8: 18 (2013) - [c4]Masahito Ohue, Yuri Matsuzaki, Takehiro Shimoda, Takashi Ishida, Yutaka Akiyama
Improvement of Protein-Protein Interaction Prediction by Integrating Template-Based and Template-Free Protein Docking. BCB 2013: 666 - [c3]Takehiro Shimoda, Masahito Ohue, Yuri Matsuzaki, Takayuki Fujiwara, Nobuyuki Uchikoga, Takashi Ishida, Yutaka Akiyama
The MEGADOCK project: Ultra-high-speed protein-protein interaction prediction tools on supercomputing environments. BCB 2013: 667 - 2012
- [c2]Masahito Ohue
Improvement of the Protein-Protein Docking Prediction by Introducing a Simple Hydrophobic Interaction Model: An Application to Interaction Pathway Analysis. PRIB 2012: 178-187
2000 – 2009
- 2009
- [j3]Yuri Matsuzaki, Yusuke Matsuzaki, Toshiyuki Sato, Yutaka Akiyama
In silico Screening of protein-protein Interactions with All-to-All Rigid docking and Clustering: an Application to Pathway Analysis. J. Bioinform. Comput. Biol. 7(6): 991-1012 (2009) - 2007
- [j2]Yuri Matsuzaki, Shinichi Kikuchi, Masaru Tomita:
Robust effects of Tsr-CheBp and CheA-CheYp affinity in bacterial chemotaxis. Artif. Intell. Medicine 41(2): 145-150 (2007) - 2000
- [c1]Masaru Tomita, Kenta Hashimoto, Koichi Takahashi, Yuri Matsuzaki, Ryo Matsushima, Katsuyuki Yugi, Fumihiko Miyoshi, Hisako Nakano, Yusuke Saito, Tom Shimizu, Yoichi Nakayama:
The E-CELL project: towards integrative simulation of cellular processes. RECOMB 2000: 290-298
1990 – 1999
- 1999
- [j1]Masaru Tomita, Kenta Hashimoto, Koichi Takahashi, Thomas Simon Shimizu, Yuri Matsuzaki, Fumihiko Miyoshi, Kanako Saito, Sakura Tanida, Katsuyuki Yugi
E-CELL: software environment for whole-cell simulation. Bioinform. 15(1): 72-84 (1999)
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