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Hiroyuki Toh
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2010 – 2019
- 2019
- [r1]Hiroyuki Toh:
Phylogenetic Footprinting. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 284-287 - 2018
- [c2]Atsuko Yamaguchi
, Hiroyuki Toh:
Implementing LOD Surfer as a Search System for the Annotation of Multiple Protein Sequence Alignment. JIST 2018: 418-426 - 2016
- [j20]Hiroyuki Oda, Motonori Ota, Hiroyuki Toh:
Profile comparison revealed deviation from structural constraint at the positively selected sites. Biosyst. 147: 67-77 (2016) - 2011
- [j19]Teppei Ebina
DROP: an SVM domain linker predictor trained with optimal features selected by random forest. Bioinform. 27(4): 487-494 (2011) - 2010
- [j18]Daron M. Standley, Reiko Yamashita, Akira R. Kinjo
SeSAW: balancing sequence and structural information in protein functional mapping. Bioinform. 26(9): 1258-1259 (2010) - [j17]Kazutaka Katoh
Parallelization of the MAFFT multiple sequence alignment program. Bioinform. 26(15): 1899-1900 (2010) - [j16]Fredrik Johansson, Hiroyuki Toh:
A comparative study of conservation and variation scores. BMC Bioinform. 11: 388 (2010) - [j15]Fredrik Johansson, Hiroyuki Toh:
Relative von Neumann Entropy for Evaluating amino acid conservation. J. Bioinform. Comput. Biol. 8(5): 809-823 (2010)
2000 – 2009
- 2008
- [j14]Kazutaka Katoh
Recent developments in the MAFFT multiple sequence alignment program. Briefings Bioinform. 9(4): 286-298 (2008) - [j13]Kazutaka Katoh
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinform. 9 (2008) - 2007
- [j12]Kazutaka Katoh
PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences. Bioinform. 23(3): 372-374 (2007) - [j11]Daron M. Standley, Hiroyuki Toh, Haruki Nakamura:
ASH structure alignment package: Sensitivity and selectivity in domain classification. BMC Bioinform. 8 (2007) - [c1]Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh:
Inference of Protein-Protein Interactions by Using Co-evolutionary Information. AB 2007: 322-333 - 2006
- [j10]Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh:
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. Bioinform. 22(20): 2488-2492 (2006) - 2005
- [j9]Tetsuya Sato, Yoshihiro Yamanishi, Minoru Kanehisa, Hiroyuki Toh:
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships. Bioinform. 21(17): 3482-3489 (2005) - [j8]Daron M. Standley, Hiroyuki Toh, Haruki Nakamura:
GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures. BMC Bioinform. 6: 221 (2005) - [j7]Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Hiroyuki Toh, Katsuhisa Horimoto:
ASIAN: a web server for inferring a regulatory network framework from gene expression profiles. Nucleic Acids Res. 33(Web-Server-Issue): 659-664 (2005) - 2004
- [j6]Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Masaki Fumoto, Akira Imaizumi
ASIAN: a website for network inference. Bioinform. 20(16): 2853-2856 (2004) - 2003
- [j5]Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto:
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling. Signal Process. 83(4): 777-788 (2003) - 2002
- [j4]Hiroyuki Toh, Katsuhisa Horimoto:
Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling. Bioinform. 18(2): 287-297 (2002) - 2001
- [j3]Katsuhisa Horimoto, Hiroyuki Toh:
Statistical estimation of cluster boundaries in gene expression profile data. Bioinform. 17(12): 1143-1151 (2001)
1990 – 1999
- 1998
- [j2]Katsuhisa Horimoto, Mikita Suyama
A method for comparing circular genomes from gene locations: application to mitochondrial genomes. Bioinform. 14(9): 789-802 (1998) - 1997
- [j1]Hiroyuki Toh:
Introduction of a distance cut-off into structural alignment by the double dynamic programming algorithm. Comput. Appl. Biosci. 13(4): 387-396 (1997)
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