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Vivian S. Gainer
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2020 – today
- 2024
- [j17]Jun Wen
, Jue Hou, Clara-Lea Bonzel, Yihan Zhao
LATTE: Label-efficient incident phenotyping from longitudinal electronic health records. Patterns 5(1): 100906 (2024) - 2023
- [i1]Jun Wen, Jue Hou, Clara-Lea Bonzel, Yihan Zhao, Victor M. Castro, Vivian S. Gainer, Dana Weisenfeld, Tianrun Cai, Yuk-Lam Ho, Vidul Ayakulangara Panickan, Lauren Costa, Chuan Hong, J. Michael Gaziano, Katherine P. Liao, Junwei Lu, Kelly Cho, Tianxi Cai:
LATTE: Label-efficient Incident Phenotyping from Longitudinal Electronic Health Records. CoRR abs/2305.11407 (2023) - 2022
- [j16]Victor M. Castro, Vivian S. Gainer, Nich Wattanasin, Barbara Benoit, Andrew Cagan, Bhaswati Ghosh, Sergey Goryachev, Reeta Metta, Heekyong Park
The Mass General Brigham Biobank Portal: an i2b2-based data repository linking disparate and high-dimensional patient data to support multimodal analytics. J. Am. Medical Informatics Assoc. 29(4): 643-651 (2022) - [j15]Jingzhi Yu, Jennifer A. Pacheco, Anika S. Ghosh, Yuan Luo, Chunhua Weng, Ning Shang, Barbara Benoit, David S. Carrell, Robert J. Carroll, Ozan Dikilitas, Robert R. Freimuth, Vivian S. Gainer, Hakon Hakonarson, George Hripcsak, Iftikhar J. Kullo, Frank D. Mentch, Shawn N. Murphy, Peggy L. Peissig, Andrea H. Ramirez, Nephi Walton, Wei-Qi Wei, Luke V. Rasmussen:
Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions. BMC Medical Informatics Decis. Mak. 22(1): 23 (2022) - 2021
- [j14]Ning Shang
Medical records-based chronic kidney disease phenotype for clinical care and "big data" observational and genetic studies. npj Digit. Medicine 4 (2021) - [c18]Jennifer A. Pacheco, Luke V. Rasmussen, Ken Wiley, Thomas N. Person, David J. Cronkite, Sunghwan Sohn, Shawn N. Murphy, Justin H. Gundelach, Vivian S. Gainer, Victor M. Castro, Cong Liu, Todd Lingren, Frank D. Mentch, Agnes S. Sundaresan, Garrett Eickelberg, Valerie Willis, Al'ona Furmanchuk, Roshan Patel, David S. Carrell, Marc S. Williams, Elizabeth W. Karlson, Jodell E. Linder, Yuan Luo, Chunhua Weng, Wei-Qi Wei:
Evaluation of the Portability of Natural Language Processing-based Computable Phenotypes in the eMERGE Network. AMIA 2021 - [c17]Nich Wattanasin, Victor M. Castro, Vivian S. Gainer, Barbara Benoit, Andrew Cagan, Reeta Metta, Shawn N. Murphy:
A Novel Data Portal to Enable COVID-19 Data Integration and Analysis. AMIA 2021 - 2020
- [j13]Yuri Ahuja, Doudou Zhou, Zeling He, Jiehuan Sun, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, Chuan Hong, Tianxi Cai:
sureLDA: A multidisease automated phenotyping method for the electronic health record. J. Am. Medical Informatics Assoc. 27(8): 1235-1243 (2020) - [c16]Heekyong Park, Taowei David Wang, Vivian S. Gainer, Victor M. Castro, Nich Wattanasin, Shawn N. Murphy:
HistoriView: An Interactive and Scalable Visual Exploratory Plugin for Longitudinal Patient Data Review. AMIA 2020
2010 – 2019
- 2019
- [j12]Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell
High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. J. Am. Medical Informatics Assoc. 26(11): 1255-1262 (2019) - [j11]George Hripcsak, Ning Shang, Peggy L. Peissig, Luke V. Rasmussen
Facilitating phenotype transfer using a common data model. J. Biomed. Informatics 96 (2019) - [j10]Ning Shang
Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network. J. Biomed. Informatics 99 (2019) - [c15]Yuri Ahuja, Doudou Zhou, Zeling He, Jiehuan Sun, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, Chuan Hong, Tianxi Cai:
sureLDA: A Novel Multi-Disease Automated Phenotyping Method for the Electronic Health Record. AMIA 2019 - [c14]Nich Wattanasin, Taowei David Wang, Vivian S. Gainer, Shawn N. Murphy:
Scalable Process to Generate Aggregated Patient Data for Analysis. AMIA 2019 - 2018
- [j9]Sheng Yu, Yumeng Ma, Jessica L. Gronsbell
Enabling phenotypic big data with PheNorm. J. Am. Medical Informatics Assoc. 25(1): 54-60 (2018) - [j8]Jennifer A. Pacheco
A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments. J. Am. Medical Informatics Assoc. 25(11): 1540-1546 (2018) - [c13]Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell, Lauren Costa, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, J. Michael Gaziano, Kelly Cho, Peter Szolovits, Isaac S. Kohane, Sheng Yu, Tianxi Cai:
High-Throughput Multimodal Automated Phenotyping (MAP) Incorporating Natural Language Processing with Application to PheWAS. AMIA 2018 - 2017
- [j7]Sheng Yu
Surrogate-assisted feature extraction for high-throughput phenotyping. J. Am. Medical Informatics Assoc. 24(e1): e143-e149 (2017) - [c12]Heekyong Park, Taowei David Wang, Vivian S. Gainer, Victor M. Castro, Shawn N. Murphy:
Building Better Timeline Interactions for Patient Chart Reviews. AMIA 2017 - [c11]Sheng Yu, Yumeng Ma, Jessica L. Gronsbell, Katherine P. Liao, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai:
High-throughput Phenotyping via Denoised Normal Mixture Transformation. AMIA 2017 - [c10]Victor M. Castro, Nich Wattanasin, Vivian S. Gainer, Bhaswati Ghosh, Shawn N. Murphy:
Applying Computed Phenotypes Derived from Electronic Health Records in the Partners HealthCare Biobank Using i2b2. CRI 2017 - 2016
- [c9]Nich Wattanasin, Taowei David Wang, Bhaswati Ghosh, Reeta Metta, Vivian S. Gainer, Shawn N. Murphy:
Export data from i2b2 using the new download data web client plugin. AMIA 2016 - [c8]Alyssa P. Goodson, Andrew Cagan, Vivian S. Gainer, Christopher D. Herrick, Kelly Bell, Tianxi Cai, Shawn N. Murphy:
Defining a Statistically Valid Type 2 Diabetes Cohort in the Partners HealthCare EMR. CRI 2016 - 2015
- [j6]Sheng Yu
Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources. J. Am. Medical Informatics Assoc. 22(5): 993-1000 (2015) - [j5]Chen Lin, Elizabeth W. Karlson, Dmitriy Dligach, Monica P. Ramirez, Timothy A. Miller, Huan Mo
Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record. J. Am. Medical Informatics Assoc. 22(e1): e151-e161 (2015) - [c7]Uri Kartoun, Vishesh Kumar, Su-Chun Cheng, Sheng Yu, Katherine P. Liao, Elizabeth W. Karlson, Ashwin N. Ananthakrishnan, Zongqi Xia, Vivian S. Gainer, Andrew Cagan, Guergana Savova, Pei J. Chen, Shawn N. Murphy, Susanne E. Churchill, Isaac S. Kohane, Peter Szolovits, Tianxi Cai, Stanley Y. Shaw:
Demonstrating the Advantages of Applying Data Mining Techniques on Time-Dependent Electronic Medical Records. AMIA 2015 - [c6]Shawn N. Murphy, Vivian S. Gainer, Victor M. Castro, Alyssa P. Goodson, Lori C. Phillips, Sheng Yu, Tianxi Cai:
Computable Phenotypes enabled by the i2b2 Validation Platform. AMIA 2015 - 2014
- [j4]Victor M. Castro, W. Kay Apperson, Vivian S. Gainer, Ashwin N. Ananthakrishnan, Alyssa P. Goodson, Taowei David Wang, Christopher D. Herrick, Shawn N. Murphy:
Evaluation of matched control algorithms in EHR-based phenotyping studies: A case study of inflammatory bowel disease comorbidities. J. Biomed. Informatics 52: 105-111 (2014) - [c5]Victor M. Castro, Sergey Goryachev, Christopher Herrick, Vivian S. Gainer, Martin Rees, Shawn N. Murphy:
Integrating Information from Unstructured Text with Structured Clinical Data from an Electronic Medical Record to Improve Patient Cohort Identification. AMIA 2014 - [c4]Shawn N. Murphy, Nich Wattanasin, Susanne E. Churchill, Isaac S. Kohane, Vivian S. Gainer:
Informatics for Integrating Biology and the Bedside (I2b2) Clinical Trials (CT) Patient Ascertainment Suite. AMIA 2014 - 2012
- [j3]Robert J. Carroll, William K. Thompson, Anne E. Eyler, Arthur M. Mandelin, Tianxi Cai, Raquel M. Zink, Jennifer A. Pacheco
Portability of an algorithm to identify rheumatoid arthritis in electronic health records. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [c3]Victor M. Castro, Vivian S. Gainer, Christopher Herrick, Shawn N. Murphy, Wannapa Kay Mahamaneerat:
Implementing a pharmacovigilance framework using data from electronic medical records. AMIA 2012 - 2011
- [j2]Shawn N. Murphy, Vivian S. Gainer, Michael Mendis, Susanne E. Churchill, Isaac S. Kohane:
Strategies for maintaining patient privacy in i2b2. J. Am. Medical Informatics Assoc. 18(Supplement): 103-108 (2011) - 2010
- [j1]Shawn N. Murphy, Griffin M. Weber
Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2). J. Am. Medical Informatics Assoc. 17(2): 124-130 (2010)
2000 – 2009
- 2007
- [c2]Shawn N. Murphy, Michael Mendis, Kristel Hackett, Rajesh Kuttan, Wensong Pan, Lori C. Phillips, Vivian S. Gainer, David Berkowicz, John P. Glaser, Isaac S. Kohane, Henry C. Chueh:
Architecture of the Open-source Clinical Research Chart from Informatics for Integrating Biology and the Bedside. AMIA 2007 - 2003
- [c1]Shawn N. Murphy, Vivian S. Gainer, Henry C. Chueh:
A Visual Interface Designed for Novice Users to find Research Patient Cohorts in a Large Biomedical Database. AMIA 2003
Coauthor Index
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last updated on 2024-10-07 22:18 CEST by the dblp team
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