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Hong-Jie Dai
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2020 – today
- 2023
- [j43]Chi-Shin Wu, Chien-Hung Chen, Chu-Hsien Su, Yi-Ling Chien, Hong-Jie Dai, Hsin-Hsi Chen:
Augmenting DSM-5 diagnostic criteria with self-attention-based BiLSTM models for psychiatric diagnosis. Artif. Intell. Medicine 136: 102488 (2023) - [j42]Davy Weissenbacher
, Karen O'Connor
Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition. Database J. Biol. Databases Curation 2023 (2023) - 2022
- [j41]Chen-Kai Wang
Principle-Based Approach for the De-Identification of Code-Mixed Electronic Health Records. IEEE Access 10: 22875-22885 (2022) - 2021
- [j40]Hong-Jie Dai
Cancer Registry Coding via Hybrid Neural Symbolic Systems in the Cross-Hospital Setting. IEEE Access 9: 112081-112096 (2021) - [c31]You-Qian Lee, Bo-Hong Wang, Chu-Hsien Su, Pei-Tsz Chen, Wu-Qing Lin, Chi-Shin Wu, Hong-Jie Dai:
Protected Health Information Recognition of Unstructured Code-Mixed Electronic Health Records in Taiwan. MedInfo 2021: 627-631 - 2020
- [j39]Hong-Jie Dai, Chu-Hsien Su, Chi-Shin Wu:
Adverse drug event and medication extraction in electronic health records via a cascading architecture with different sequence labeling models and word embeddings. J. Am. Medical Informatics Assoc. 27(1): 47-55 (2020) - [j38]Hong-Jie Dai
Cohort selection for clinical trials using multiple instance learning. J. Biomed. Informatics 107: 103438 (2020) - [c30]Yan-Jie Lin, Hong-Jie Dai, You-Chen Zhang, Chung-Yang Wu, Yu-Cheng Chang, Pin-Jou Lu, Chih-Jen Huang, Yu-Tsang Wang, Hui-Min Hsieh, Kun-San Chao, Tsang-Wu Liu, I-Shou Chang, Yi-Hsin Connie Yang, Ti-Hao Wang, Ko-Jiunn Liu, Li-Tzong Chen, Sheau-Fang Yang:
Cancer Registry Information Extraction via Transfer Learning. ClinicalNLP@EMNLP 2020: 201-208 - [c29]Chen-Kai Wang, Hong-Jie Dai, You-Chen Zhang, Bo-Chun Xu, Bo-Hong Wang, You-Ning Xu, Po-Hao Chen, Chung-Hong Lee:
ISLab System for SMM4H Shared Task 2020. SMM4H@COLING 2020: 42-45
2010 – 2019
- 2019
- [j37]Rezarta Islamaj Dogan
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. Database J. Biol. Databases Curation 2019: bay147 (2019) - [j36]Hong-Jie Dai
Statistical principle-based approach for recognizing and normalizing microRNAs described in scientific literature. Database J. Biol. Databases Curation 2019: baz030 (2019) - [j35]Hong-Jie Dai
Classifying adverse drug reactions from imbalanced twitter data. Int. J. Medical Informatics 129: 122-132 (2019) - [j34]Hong-Jie Dai:
Family member information extraction via neural sequence labeling models with different tag schemes. BMC Medical Informatics Decis. Mak. 19-S(10): 257 (2019) - [c28]You-Chen Zhang, Chung-Hong Lee, Tyng-Yeu Liang, Wei-Che Chung, Kuei-Han Li, Cheng-Chieh Huang, Hong-Jie Dai, Chi-Shin Wu, Chian-Jue Kuo, Chu-Hsien Su, Horng-Chang Yang:
Depressive Symptoms and Functional Impairments Extraction From Electronic Health Records. ICMLC 2019: 1-6 - [c27]Chen-Kai Wang, Hong-Jie Dai, Bo-Hung Wang:
BIGODM System in the Social Media Mining for Health Applications Shared Task 2019. SMM4H@ACL 2019: 117-119 - [r1]Onkar Singh, Nai-Wen Chang, Hong-Jie Dai, Jitendra Jonnagaddala:
Translational Bioinformatics Databases. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 1058-1062 - 2018
- [j33]Hong-Jie Dai
SPRENO: a BioC module for identifying organism terms in figure captions. Database J. Biol. Databases Curation 2018: bay048 (2018) - [c26]Neha Warikoo
An Ensemble Neural Network Model for Benefiting Pregnancy Health Stats from Mining Social Media. AIRS 2018: 3-15 - [c25]Chen-Kai Wang, Hong-Jie Dai, Feng-Duo Wang, Emily Chia-Yu Su:
Adverse Drug Reaction Post Classification with Imbalanced Classification Techniques. TAAI 2018: 5-9 - 2017
- [j32]Nai-Wen Chang, Hong-Jie Dai, Yung-Yu Shih, Chi-Yang Wu, Mira Anne C. dela Rosa, Rofeamor P. Obena, Yu-Ju Chen
Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy. Database J. Biol. Databases Curation 2017: bax082 (2017) - [c24]Chen-Kai Wang, Nai-Wun Chang, Emily Chia-Yu Su, Hong-Jie Dai:
NTTMU System in the 2nd Social Media Mining for Health Applications Shared Task. SMM4H@AMIA 2017: 83-86 - [c23]Yi-Jie Huang, Chu-Hsien Su, Yi-Chun Chang, Tseng-Hsin Ting, Tzu-Yuan Fu, Rou-Min Wang, Hong-Jie Dai, Yung-Chun Chang, Jitendra Jonnagaddala, Wen-Lian Hsu:
Incorporating Dependency Trees Improve Identification of Pregnant Women on Social Media Platforms. DDDSM@IJCNLP 2017: 26-32 - [c22]Chen-Kai Wang, Onkar Singh, Zhao-Li Tang, Hong-Jie Dai:
Using a Recurrent Neural Network Model for Classification of Tweets Conveyed Influenza-related Information. DDDSM@IJCNLP 2017: 33-38 - [c21]Josan Wei-San Lin, Hong-Jie Dai, Joni Yu-Hsuan Shao:
Principle Base Approach for Classifying Tweets with Flu-related Information in NTCIR-13 MedWeb Task. NTCIR 2017 - [e1]Jitendra Jonnagaddala, Hong-Jie Dai, Yung-Chun Chang:
Proceedings of the International Workshop on Digital Disease Detection using Social Media, DDDSM@IJCNLP 2017, Taipei, Taiwan, November 27, 2017. Association for Computational Linguistics 2017, ISBN 978-1-948087-07-0 [contents] - 2016
- [j31]Hong-Jie Dai, Onkar Singh, Jitendra Jonnagaddala
NTTMUNSW BioC modules for recognizing and normalizing species and gene/protein mentions. Database J. Biol. Databases Curation 2016 (2016) - [j30]Hong-Jie Dai, Chu-Hsien Su, Po-Ting Lai
MET network in PubMed: a text-mined network visualization and curation system. Database J. Biol. Databases Curation 2016 (2016) - [j29]Jitendra Jonnagaddala
Improving the dictionary lookup approach for disease normalization using enhanced dictionary and query expansion. Database J. Biol. Databases Curation 2016 (2016) - [j28]Sun Kim, Rezarta Islamaj Dogan
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. Database J. Biol. Databases Curation 2016 (2016) - [j27]Qinghua Wang, Shabbir Syed-Abdul
Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation 2016 (2016) - [j26]Hong-Jie Dai
Feature Engineering for Recognizing Adverse Drug Reactions from Twitter Posts. Inf. 7(2): 27 (2016) - [c20]Nai-Wen Chang, Hong-Jie Dai, Yu-Lun Hsieh, Wen-Lian Hsu:
Statistical Principle-Based Approach for Detecting miRNA-Target Gene Interaction Articles. BIBE 2016: 79-86 - [c19]Chen-Kai Wang, Hong-Jie Dai, Chih-Wei Chen, Jitendra Jonnagaddala, Nai-Wen Chang:
Combining Multiple Classifiers Using Global Ranking for ReachOut.com Post Triage. CLPsych@HLT-NAACL 2016: 176-179 - 2015
- [j25]Nai-Wen Chang, Hong-Jie Dai
A context-aware approach for progression tracking of medical concepts in electronic medical records. J. Biomed. Informatics 58: S150-S157 (2015) - [j24]Jitendra Jonnagaddala
Coronary artery disease risk assessment from unstructured electronic health records using text mining. J. Biomed. Informatics 58: S203-S210 (2015) - [j23]Hong-Jie Dai, Po-Ting Lai
Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization. J. Cheminformatics 7(S-1): S14 (2015) - [j22]Martin Krallinger
The CHEMDNER corpus of chemicals and drugs and its annotation principles. J. Cheminformatics 7(S-1): S2 (2015) - [c18]Jitendra Jonnagaddala, Hong-Jie Dai, Pradeep Ray
A preliminary study on automatic identification of patient smoking status in unstructured electronic health records. BioNLP@IJCNLP 2015: 147-151 - [c17]Jitendra Jonnagaddala, Siaw-Teng Liaw, Pradeep Kumar Ray
TMUNSW: Identification of Disorders and Normalization to SNOMED-CT Terminology in Unstructured Clinical Notes. SemEval@NAACL-HLT 2015: 394-398 - [c16]Josan Wei-San Lin, Hong-Jie Dai, Jitendra Jonnagaddala, Nai-Wun Chang, Toni Rose Jue
Utilizing different word representation methods for twitter data in adverse drug reactions extraction. TAAI 2015: 260-265 - 2014
- [j21]Donald C. Comeau, Riza Theresa Batista-Navarro
BioC interoperability track overview. Database J. Biol. Databases Curation 2014 (2014) - [j20]Hong-Jie Dai, Johnny Chi-Yang Wu, Josan Wei-San Lin, Aaron James F. Reyes, Mira Anne C. dela Rosa, Syed Abdul Shabbir
LiverCancerMarkerRIF: a liver cancer biomarker interactive curation system combining text mining and expert annotations. Database J. Biol. Databases Curation 2014 (2014) - [j19]Yuqing Mao
Overview of the gene ontology task at BioCreative IV. Database J. Biol. Databases Curation 2014 (2014) - [j18]Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Joint Learning of Entity Linking Constraints Using a Markov-Logic Network. Int. J. Comput. Linguistics Chin. Lang. Process. 19(1) (2014) - [c15]Jitendra Jonnagaddala, Manish Kumar, Hong-Jie Dai, Enny Rachmani, Chien-Yeh Hsu
TMUNSW: Disorder Concept Recognition and Normalization in Clinical Notes for SemEval-2014 Task 7. SemEval@COLING 2014: 663-667 - [c14]Chih-Wei Chen, Nai-Wen Chang, Yung-Chun Chang, Hong-Jie Dai:
Section Heading Recognition in Electronic Health Records Using Conditional Random Fields. TAAI 2014: 47-55 - [c13]Jitendra Jonnagaddala, Siaw-Teng Liaw, Pradeep Ray
HTNSystem: Hypertension Information Extraction System for Unstructured Clinical Notes. TAAI 2014: 219-227 - 2013
- [j17]Hong-Jie Dai, Chi-Yang Wu, Richard Tzong-Han Tsai
T-HOD: a literature-based candidate gene database for hypertension, obesity and diabetes. Database J. Biol. Databases Curation 2013 (2013) - [j16]Yung-Chun Chang
TEMPTING system: A hybrid method of rule and machine learning for temporal relation extraction in patient discharge summaries. J. Biomed. Informatics 46(6): S54-S62 (2013) - 2012
- [j15]Hong-Jie Dai, Chun-Yu Chen, Chi-Yang Wu, Po-Ting Lai
Coreference resolution of medical concepts in discharge summaries by exploiting contextual information. J. Am. Medical Informatics Assoc. 19(5): 888-896 (2012) - 2011
- [j14]Hong-Jie Dai, Yen-Ching Chang, Richard Tzong-Han Tsai
Integration of gene normalization stages and co-reference resolution using a Markov logic network. Bioinform. 27(18): 2586-2594 (2011) - [j13]Yu-Ching Fang, Po-Ting Lai
MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature. BMC Bioinform. 12: 471 (2011) - [j12]Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei
The gene normalization task in BioCreative III. BMC Bioinform. 12(S-8): S2 (2011) - [c12]Hong-Jie Dai, Wei-Chi Tsai, Richard Tzong-Han Tsai
Enhancing Search Results with Semantic Annotation Using Augmented Browsing. IJCAI 2011: 2418-2423 - [c11]Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Entity Disambiguation Using a Markov-Logic Network. IJCNLP 2011: 846-855 - 2010
- [j11]Hong-Jie Dai, Po-Ting Lai
Multistage Gene Normalization and SVM-Based Ranking for Protein Interactor Extraction in Full-Text Articles. IEEE ACM Trans. Comput. Biol. Bioinform. 7(3): 412-420 (2010) - [c10]Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Global Ranking via Data Fusion. COLING (Posters) 2010: 223-231
2000 – 2009
- 2009
- [j10]Richard Tzong-Han Tsai
PubMed-EX: a web browser extension to enhance PubMed search with text mining features. Bioinform. 25(22): 3031-3032 (2009) - [j9]Richard Tzong-Han Tsai
HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features. BMC Bioinform. 10(S-15): 9 (2009) - [j8]Ryan T. K. Lin, Justin Liang-Te Chiu, Hong-Jie Dai, Richard Tzong-Han Tsai
A supervised learning approach to biological question answering. Integr. Comput. Aided Eng. 16(3): 271-281 (2009) - [j7]Ryan T. K. Lin, Hong-Jie Dai, Yue-Yang Bow, Justin Liang-Te Chiu, Richard Tzong-Han Tsai
Using conditional random fields for result identification in biomedical abstracts. Integr. Comput. Aided Eng. 16(4): 339-352 (2009) - [j6]Hong-Jie Dai, Yen-Ching Chang, Richard Tzong-Han Tsai
New Challenges for Biological Text-Mining in the Next Decade. J. Comput. Sci. Technol. 25(1): 169-179 (2009) - [c9]Po-Ting Lai, Yue-Yang Bow, Chi-Hsin Huang, Hong-Jie Dai, Richard Tzong-Han Tsai
Using Contextual Information to Clarify Gene Normalization Ambiguity. IRI 2009: 1-5 - 2008
- [j5]Richard Tzong-Han Tsai
Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles. BMC Bioinform. 9(S-1) (2008) - [j4]Richard Tzong-Han Tsai
Semi-automatic conversion of BioProp semantic annotation to PASBio annotation. BMC Bioinform. 9(S-12) (2008) - [j3]Hong-Jie Dai, Chi-Hsin Huang, Ryan T. K. Lin, Richard Tzong-Han Tsai
BIOSMILE web search: a web application for annotating biomedical entities and relations. Nucleic Acids Res. 36(Web-Server-Issue): 390-398 (2008) - [c8]Ryan T. K. Lin, Hong-Jie Dai, Yue-Yang Bow, Min-Yuh Day
Result identification for biomedical abstracts using Conditional Random Fields. IRI 2008: 122-126 - [c7]Ryan T. K. Lin, Justin Liang-Te Chiu, Hong-Jie Dai, Min-Yuh Day
Biological question answering with syntactic and semantic feature matching and an improved mean reciprocal ranking measurement. IRI 2008: 184-189 - [c6]Hong-Jie Dai, Chi-Hsin Huang, Jaimie Yi-Wen Lin, Pei-Hsuan Chou, Richard Tzong-Han Tsai
A Survey of State of the Art Biomedical Text Mining Techniques for Semantic Analysis. SUTC 2008: 410-417 - 2007
- [j2]Richard Tzong-Han Tsai
BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features. BMC Bioinform. 8 (2007) - [c5]Richard Tzong-Han Tsai, Hsi-Chuan Hung, Hong-Jie Dai, Wen-Lian Hsu:
Exploiting unlabeled internal data in conditional random fields to reduce word segmentation errors for Chinese texts. INTERSPEECH 2007: 2885-2888 - [c4]Richard Tzong-Han Tsai
BESearch: A Supervised Learning Approach to Search for Molecular Event Participants. IRI 2007: 412-417 - [c3]Richard Tzong-Han Tsai, Hsieh-Chuan Hung, Hong-Jie Dai, Yi-Wen Lin:
Protein-Protein Interaction Abstract Identification with Contextual Bag of Words. LBM (Short Papers) 2007 - 2006
- [j1]Richard Tzong-Han Tsai
NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition. BMC Bioinform. 7(S-5) (2006) - [c2]Richard Tzong-Han Tsai, Hsieh-Chuan Hung, Cheng-Lung Sung, Hong-Jie Dai, Wen-Lian Hsu:
On Closed Task of Chinese Word Segmentation: An Improved CRF Model Coupled with Character Clustering and Automatically Generated Template Matching. SIGHAN@COLING/ACL 2006: 134-137 - [c1]Richard Tzong-Han Tsai
Chinese word segmentation with minimal linguistic knowledge: An improved conditional random fields coupled with character clustering and automatically discovered template matching. IRI 2006: 274-279
Coauthor Index
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